Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3625 and HP15_3626 are separated by 25 nucleotides HP15_3626 and HP15_3627 are separated by 63 nucleotides HP15_3627 and HP15_3628 are separated by 20 nucleotides HP15_3628 and HP15_3629 are separated by 70 nucleotides
HP15_3625: HP15_3625 - choline dehydrogenase, at 3,820,662 to 3,822,347
_3625
HP15_3626: HP15_3626 - betaine aldehyde dehydrogenase, at 3,822,373 to 3,823,842
_3626
HP15_3627: HP15_3627 - transcriptional regulator, TetR family, at 3,823,906 to 3,824,499
_3627
HP15_3628: HP15_3628 - hypothetical protein, at 3,824,520 to 3,824,624
_3628
HP15_3629: HP15_3629 - conserved hypothetical protein, at 3,824,695 to 3,824,907
_3629
Position (kb)
3822
3823
3824 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3821.390 kb on + strand, within HP15_3625 at 3821.405 kb on + strand, within HP15_3625 at 3821.509 kb on + strand, within HP15_3625 at 3821.527 kb on + strand, within HP15_3625 at 3821.552 kb on + strand, within HP15_3625 at 3821.560 kb on - strand, within HP15_3625 at 3821.690 kb on + strand, within HP15_3625 at 3821.690 kb on + strand, within HP15_3625 at 3821.698 kb on - strand, within HP15_3625 at 3821.698 kb on - strand, within HP15_3625 at 3821.698 kb on - strand, within HP15_3625 at 3821.705 kb on - strand, within HP15_3625 at 3821.742 kb on + strand, within HP15_3625 at 3821.781 kb on + strand, within HP15_3625 at 3821.787 kb on - strand, within HP15_3625 at 3821.870 kb on - strand, within HP15_3625 at 3821.877 kb on - strand, within HP15_3625 at 3821.877 kb on - strand, within HP15_3625 at 3821.920 kb on + strand, within HP15_3625 at 3821.958 kb on + strand, within HP15_3625 at 3821.966 kb on - strand, within HP15_3625 at 3821.967 kb on - strand, within HP15_3625 at 3822.054 kb on + strand, within HP15_3625 at 3822.062 kb on - strand, within HP15_3625 at 3822.087 kb on + strand, within HP15_3625 at 3822.101 kb on + strand, within HP15_3625 at 3822.123 kb on + strand, within HP15_3625 at 3822.184 kb on + strand at 3822.189 kb on + strand at 3822.192 kb on - strand at 3822.251 kb on + strand at 3822.290 kb on + strand at 3822.426 kb on - strand at 3822.598 kb on + strand, within HP15_3626 at 3822.814 kb on + strand, within HP15_3626 at 3822.960 kb on - strand, within HP15_3626 at 3822.960 kb on - strand, within HP15_3626 at 3823.007 kb on + strand, within HP15_3626 at 3823.007 kb on + strand, within HP15_3626 at 3823.007 kb on + strand, within HP15_3626 at 3823.060 kb on + strand, within HP15_3626 at 3823.121 kb on - strand, within HP15_3626 at 3823.237 kb on + strand, within HP15_3626 at 3823.339 kb on + strand, within HP15_3626 at 3823.339 kb on + strand, within HP15_3626 at 3823.347 kb on - strand, within HP15_3626 at 3823.347 kb on - strand, within HP15_3626 at 3823.379 kb on + strand, within HP15_3626 at 3823.379 kb on + strand, within HP15_3626 at 3823.477 kb on - strand, within HP15_3626 at 3823.569 kb on + strand, within HP15_3626 at 3823.577 kb on - strand, within HP15_3626 at 3823.577 kb on - strand, within HP15_3626 at 3823.577 kb on - strand, within HP15_3626 at 3823.577 kb on - strand, within HP15_3626 at 3823.649 kb on - strand, within HP15_3626 at 3823.649 kb on - strand, within HP15_3626 at 3823.730 kb on - strand at 3823.738 kb on + strand at 3823.739 kb on + strand at 3823.821 kb on - strand at 3823.886 kb on - strand at 3823.921 kb on + strand at 3823.921 kb on + strand at 3823.990 kb on + strand, within HP15_3627 at 3824.188 kb on - strand, within HP15_3627 at 3824.332 kb on - strand, within HP15_3627 at 3824.336 kb on - strand, within HP15_3627 at 3824.374 kb on + strand, within HP15_3627 at 3824.382 kb on - strand, within HP15_3627 at 3824.408 kb on + strand, within HP15_3627 at 3824.408 kb on - strand, within HP15_3627 at 3824.420 kb on + strand, within HP15_3627 at 3824.468 kb on - strand at 3824.613 kb on + strand, within HP15_3628 at 3824.723 kb on + strand, within HP15_3629 at 3824.731 kb on - strand, within HP15_3629 at 3824.731 kb on - strand, within HP15_3629 at 3824.731 kb on - strand, within HP15_3629 at 3824.789 kb on - strand, within HP15_3629
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,821,390 + HP15_3625 0.43 -0.5 3,821,405 + HP15_3625 0.44 +1.0 3,821,509 + HP15_3625 0.50 +0.6 3,821,527 + HP15_3625 0.51 -1.3 3,821,552 + HP15_3625 0.53 -0.6 3,821,560 - HP15_3625 0.53 -0.2 3,821,690 + HP15_3625 0.61 +0.0 3,821,690 + HP15_3625 0.61 +0.4 3,821,698 - HP15_3625 0.61 +0.7 3,821,698 - HP15_3625 0.61 +0.9 3,821,698 - HP15_3625 0.61 -0.2 3,821,705 - HP15_3625 0.62 +0.3 3,821,742 + HP15_3625 0.64 +0.3 3,821,781 + HP15_3625 0.66 -0.7 3,821,787 - HP15_3625 0.67 +0.2 3,821,870 - HP15_3625 0.72 +0.3 3,821,877 - HP15_3625 0.72 -0.2 3,821,877 - HP15_3625 0.72 -0.1 3,821,920 + HP15_3625 0.75 -0.5 3,821,958 + HP15_3625 0.77 -0.3 3,821,966 - HP15_3625 0.77 +0.3 3,821,967 - HP15_3625 0.77 -0.7 3,822,054 + HP15_3625 0.83 -0.7 3,822,062 - HP15_3625 0.83 +0.2 3,822,087 + HP15_3625 0.85 +0.8 3,822,101 + HP15_3625 0.85 -3.0 3,822,123 + HP15_3625 0.87 -2.2 3,822,184 + +0.2 3,822,189 + -0.7 3,822,192 - +1.2 3,822,251 + +0.5 3,822,290 + -0.2 3,822,426 - +0.3 3,822,598 + HP15_3626 0.15 -0.3 3,822,814 + HP15_3626 0.30 +0.3 3,822,960 - HP15_3626 0.40 +1.2 3,822,960 - HP15_3626 0.40 +0.7 3,823,007 + HP15_3626 0.43 +0.2 3,823,007 + HP15_3626 0.43 +0.5 3,823,007 + HP15_3626 0.43 -0.2 3,823,060 + HP15_3626 0.47 -0.0 3,823,121 - HP15_3626 0.51 +1.3 3,823,237 + HP15_3626 0.59 +1.8 3,823,339 + HP15_3626 0.66 +0.7 3,823,339 + HP15_3626 0.66 +0.5 3,823,347 - HP15_3626 0.66 +1.8 3,823,347 - HP15_3626 0.66 +1.1 3,823,379 + HP15_3626 0.68 -0.1 3,823,379 + HP15_3626 0.68 -0.1 3,823,477 - HP15_3626 0.75 +2.4 3,823,569 + HP15_3626 0.81 -0.0 3,823,577 - HP15_3626 0.82 +1.6 3,823,577 - HP15_3626 0.82 +1.5 3,823,577 - HP15_3626 0.82 +1.4 3,823,577 - HP15_3626 0.82 +0.7 3,823,649 - HP15_3626 0.87 +0.2 3,823,649 - HP15_3626 0.87 +0.7 3,823,730 - +0.5 3,823,738 + +1.3 3,823,739 + +0.9 3,823,821 - +0.4 3,823,886 - -0.8 3,823,921 + -0.3 3,823,921 + +0.5 3,823,990 + HP15_3627 0.14 -0.1 3,824,188 - HP15_3627 0.47 -0.7 3,824,332 - HP15_3627 0.72 +0.6 3,824,336 - HP15_3627 0.72 -0.2 3,824,374 + HP15_3627 0.79 +0.2 3,824,382 - HP15_3627 0.80 +3.4 3,824,408 + HP15_3627 0.85 +1.2 3,824,408 - HP15_3627 0.85 -1.7 3,824,420 + HP15_3627 0.87 -0.0 3,824,468 - -0.1 3,824,613 + HP15_3628 0.89 +2.0 3,824,723 + HP15_3629 0.13 +0.1 3,824,731 - HP15_3629 0.17 +0.4 3,824,731 - HP15_3629 0.17 +0.6 3,824,731 - HP15_3629 0.17 -0.5 3,824,789 - HP15_3629 0.44 -0.2
Or see this region's nucleotide sequence