Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00250 and PGA1_262p00260 are separated by 109 nucleotides PGA1_262p00260 and PGA1_262p00270 are separated by 155 nucleotides PGA1_262p00270 and PGA1_262p00280 are separated by 93 nucleotides
PGA1_262p00250: PGA1_262p00250 - ferritin-like protein, at 29,487 to 29,960
_262p00250
PGA1_262p00260: PGA1_262p00260 - hypothetical protein, at 30,070 to 30,510
_262p00260
PGA1_262p00270: PGA1_262p00270 - transcriptional regulator, GntR family, at 30,666 to 31,334
_262p00270
PGA1_262p00280: PGA1_262p00280 - putative proline racemase, at 31,428 to 32,453
_262p00280
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 29.733 kb on + strand, within PGA1_262p00250 at 29.897 kb on + strand, within PGA1_262p00250 at 29.901 kb on - strand, within PGA1_262p00250 at 29.906 kb on - strand, within PGA1_262p00250 at 29.954 kb on + strand at 30.013 kb on + strand at 30.022 kb on - strand at 30.032 kb on - strand at 30.047 kb on + strand at 30.140 kb on + strand, within PGA1_262p00260 at 30.142 kb on - strand, within PGA1_262p00260 at 30.169 kb on + strand, within PGA1_262p00260 at 30.177 kb on - strand, within PGA1_262p00260 at 30.178 kb on - strand, within PGA1_262p00260 at 30.232 kb on - strand, within PGA1_262p00260 at 30.268 kb on + strand, within PGA1_262p00260 at 30.268 kb on + strand, within PGA1_262p00260 at 30.268 kb on + strand, within PGA1_262p00260 at 30.283 kb on - strand, within PGA1_262p00260 at 30.343 kb on - strand, within PGA1_262p00260 at 30.402 kb on + strand, within PGA1_262p00260 at 30.493 kb on + strand at 30.589 kb on + strand at 30.597 kb on - strand at 30.597 kb on - strand at 30.657 kb on + strand at 30.703 kb on + strand at 30.822 kb on + strand, within PGA1_262p00270 at 30.989 kb on + strand, within PGA1_262p00270 at 31.150 kb on - strand, within PGA1_262p00270 at 31.175 kb on - strand, within PGA1_262p00270 at 31.200 kb on + strand, within PGA1_262p00270 at 31.248 kb on - strand, within PGA1_262p00270 at 31.340 kb on + strand at 31.388 kb on + strand at 31.393 kb on + strand at 31.491 kb on + strand at 31.620 kb on + strand, within PGA1_262p00280 at 31.620 kb on + strand, within PGA1_262p00280 at 31.643 kb on - strand, within PGA1_262p00280 at 31.712 kb on + strand, within PGA1_262p00280 at 31.755 kb on - strand, within PGA1_262p00280 at 31.808 kb on - strand, within PGA1_262p00280 at 31.896 kb on + strand, within PGA1_262p00280 at 31.918 kb on + strand, within PGA1_262p00280 at 31.926 kb on - strand, within PGA1_262p00280 at 32.259 kb on - strand, within PGA1_262p00280 at 32.262 kb on + strand, within PGA1_262p00280 at 32.316 kb on + strand, within PGA1_262p00280 at 32.316 kb on + strand, within PGA1_262p00280 at 32.325 kb on - strand, within PGA1_262p00280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 29,733 + PGA1_262p00250 0.52 +0.8 29,897 + PGA1_262p00250 0.86 -0.1 29,901 - PGA1_262p00250 0.87 +1.2 29,906 - PGA1_262p00250 0.88 +1.1 29,954 + -0.5 30,013 + +1.5 30,022 - -1.1 30,032 - +2.5 30,047 + -0.4 30,140 + PGA1_262p00260 0.16 +0.0 30,142 - PGA1_262p00260 0.16 -0.5 30,169 + PGA1_262p00260 0.22 -3.3 30,177 - PGA1_262p00260 0.24 -0.3 30,178 - PGA1_262p00260 0.24 -0.6 30,232 - PGA1_262p00260 0.37 +0.5 30,268 + PGA1_262p00260 0.45 -2.1 30,268 + PGA1_262p00260 0.45 -1.0 30,268 + PGA1_262p00260 0.45 -0.5 30,283 - PGA1_262p00260 0.48 -0.0 30,343 - PGA1_262p00260 0.62 -0.1 30,402 + PGA1_262p00260 0.75 -0.7 30,493 + +1.2 30,589 + -0.3 30,597 - -2.5 30,597 - +0.1 30,657 + -0.3 30,703 + +1.1 30,822 + PGA1_262p00270 0.23 -0.1 30,989 + PGA1_262p00270 0.48 +1.2 31,150 - PGA1_262p00270 0.72 -1.1 31,175 - PGA1_262p00270 0.76 +0.6 31,200 + PGA1_262p00270 0.80 +0.6 31,248 - PGA1_262p00270 0.87 +0.7 31,340 + -3.3 31,388 + -0.3 31,393 + -0.1 31,491 + +0.7 31,620 + PGA1_262p00280 0.19 +0.2 31,620 + PGA1_262p00280 0.19 -1.5 31,643 - PGA1_262p00280 0.21 -0.3 31,712 + PGA1_262p00280 0.28 -0.5 31,755 - PGA1_262p00280 0.32 +0.6 31,808 - PGA1_262p00280 0.37 +0.5 31,896 + PGA1_262p00280 0.46 +3.9 31,918 + PGA1_262p00280 0.48 +0.2 31,926 - PGA1_262p00280 0.49 +1.5 32,259 - PGA1_262p00280 0.81 -0.1 32,262 + PGA1_262p00280 0.81 -0.1 32,316 + PGA1_262p00280 0.87 +1.6 32,316 + PGA1_262p00280 0.87 +0.0 32,325 - PGA1_262p00280 0.87 -0.0
Or see this region's nucleotide sequence