Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3546 and HP15_3547 overlap by 1 nucleotides HP15_3547 and HP15_3548 overlap by 23 nucleotides HP15_3548 and HP15_3549 are separated by 156 nucleotides
HP15_3546: HP15_3546 - copper-translocating P-type ATPase, at 3,734,767 to 3,737,388
_3546
HP15_3547: HP15_3547 - hypothetical protein, at 3,737,388 to 3,737,504
_3547
HP15_3548: HP15_3548 - metal-binding protein, at 3,737,482 to 3,737,964
_3548
HP15_3549: HP15_3549 - diguanylate cyclase, at 3,738,121 to 3,739,842
_3549
Position (kb)
3737
3738 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3736.500 kb on - strand, within HP15_3546 at 3736.523 kb on - strand, within HP15_3546 at 3736.523 kb on - strand, within HP15_3546 at 3736.657 kb on + strand, within HP15_3546 at 3736.664 kb on + strand, within HP15_3546 at 3736.677 kb on - strand, within HP15_3546 at 3736.682 kb on - strand, within HP15_3546 at 3736.683 kb on + strand, within HP15_3546 at 3736.683 kb on + strand, within HP15_3546 at 3736.691 kb on - strand, within HP15_3546 at 3736.691 kb on - strand, within HP15_3546 at 3736.691 kb on - strand, within HP15_3546 at 3736.691 kb on - strand, within HP15_3546 at 3736.731 kb on - strand, within HP15_3546 at 3737.059 kb on + strand, within HP15_3546 at 3737.067 kb on - strand, within HP15_3546 at 3737.088 kb on - strand, within HP15_3546 at 3737.095 kb on + strand, within HP15_3546 at 3737.209 kb on + strand at 3737.214 kb on + strand at 3737.214 kb on + strand at 3737.214 kb on + strand at 3737.214 kb on + strand at 3737.222 kb on - strand at 3737.222 kb on - strand at 3737.224 kb on + strand at 3737.233 kb on + strand at 3737.233 kb on + strand at 3737.266 kb on - strand at 3737.305 kb on + strand at 3737.313 kb on - strand at 3737.341 kb on - strand at 3737.390 kb on - strand at 3737.416 kb on + strand, within HP15_3547 at 3737.424 kb on - strand, within HP15_3547 at 3737.484 kb on - strand at 3737.590 kb on + strand, within HP15_3548 at 3737.590 kb on + strand, within HP15_3548 at 3737.598 kb on - strand, within HP15_3548 at 3737.603 kb on - strand, within HP15_3548 at 3737.605 kb on - strand, within HP15_3548 at 3737.614 kb on + strand, within HP15_3548 at 3737.622 kb on - strand, within HP15_3548 at 3737.706 kb on + strand, within HP15_3548 at 3737.708 kb on - strand, within HP15_3548 at 3737.747 kb on - strand, within HP15_3548 at 3737.763 kb on - strand, within HP15_3548 at 3737.814 kb on + strand, within HP15_3548 at 3737.847 kb on - strand, within HP15_3548 at 3737.848 kb on - strand, within HP15_3548 at 3737.907 kb on - strand, within HP15_3548 at 3737.977 kb on + strand at 3738.001 kb on + strand at 3738.023 kb on - strand at 3738.166 kb on - strand at 3738.197 kb on + strand at 3738.240 kb on - strand at 3738.251 kb on - strand at 3738.259 kb on + strand at 3738.269 kb on + strand at 3738.329 kb on + strand, within HP15_3549 at 3738.329 kb on + strand, within HP15_3549 at 3738.329 kb on + strand, within HP15_3549 at 3738.329 kb on + strand, within HP15_3549 at 3738.329 kb on + strand, within HP15_3549 at 3738.337 kb on - strand, within HP15_3549 at 3738.337 kb on - strand, within HP15_3549 at 3738.377 kb on + strand, within HP15_3549 at 3738.385 kb on - strand, within HP15_3549 at 3738.504 kb on + strand, within HP15_3549 at 3738.525 kb on + strand, within HP15_3549 at 3738.685 kb on - strand, within HP15_3549 at 3738.729 kb on + strand, within HP15_3549 at 3738.740 kb on - strand, within HP15_3549 at 3738.774 kb on + strand, within HP15_3549 at 3738.775 kb on - strand, within HP15_3549 at 3738.842 kb on - strand, within HP15_3549 at 3738.924 kb on - strand, within HP15_3549
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,736,500 - HP15_3546 0.66 +0.1 3,736,523 - HP15_3546 0.67 +0.4 3,736,523 - HP15_3546 0.67 +1.0 3,736,657 + HP15_3546 0.72 +0.1 3,736,664 + HP15_3546 0.72 -0.0 3,736,677 - HP15_3546 0.73 +1.0 3,736,682 - HP15_3546 0.73 +1.4 3,736,683 + HP15_3546 0.73 +2.2 3,736,683 + HP15_3546 0.73 +0.5 3,736,691 - HP15_3546 0.73 +0.1 3,736,691 - HP15_3546 0.73 +0.3 3,736,691 - HP15_3546 0.73 -0.6 3,736,691 - HP15_3546 0.73 -2.4 3,736,731 - HP15_3546 0.75 -0.6 3,737,059 + HP15_3546 0.87 -1.2 3,737,067 - HP15_3546 0.88 +1.4 3,737,088 - HP15_3546 0.89 +1.8 3,737,095 + HP15_3546 0.89 +0.1 3,737,209 + +2.2 3,737,214 + -0.3 3,737,214 + +0.9 3,737,214 + +0.1 3,737,214 + +2.8 3,737,222 - -0.3 3,737,222 - -0.5 3,737,224 + -0.1 3,737,233 + -0.3 3,737,233 + -0.3 3,737,266 - -0.0 3,737,305 + -0.6 3,737,313 - +3.7 3,737,341 - +0.5 3,737,390 - +0.4 3,737,416 + HP15_3547 0.24 +0.3 3,737,424 - HP15_3547 0.31 +1.0 3,737,484 - +0.1 3,737,590 + HP15_3548 0.22 +0.4 3,737,590 + HP15_3548 0.22 +0.1 3,737,598 - HP15_3548 0.24 -0.0 3,737,603 - HP15_3548 0.25 +0.4 3,737,605 - HP15_3548 0.25 +0.2 3,737,614 + HP15_3548 0.27 -1.1 3,737,622 - HP15_3548 0.29 +0.3 3,737,706 + HP15_3548 0.46 +0.6 3,737,708 - HP15_3548 0.47 +0.2 3,737,747 - HP15_3548 0.55 +0.0 3,737,763 - HP15_3548 0.58 -0.6 3,737,814 + HP15_3548 0.69 +0.7 3,737,847 - HP15_3548 0.76 +4.2 3,737,848 - HP15_3548 0.76 +1.1 3,737,907 - HP15_3548 0.88 -0.2 3,737,977 + -0.0 3,738,001 + +0.0 3,738,023 - +0.5 3,738,166 - +0.6 3,738,197 + -0.6 3,738,240 - +1.8 3,738,251 - -1.2 3,738,259 + +1.0 3,738,269 + -0.2 3,738,329 + HP15_3549 0.12 +0.4 3,738,329 + HP15_3549 0.12 -3.2 3,738,329 + HP15_3549 0.12 -0.1 3,738,329 + HP15_3549 0.12 -0.2 3,738,329 + HP15_3549 0.12 +0.2 3,738,337 - HP15_3549 0.13 +0.2 3,738,337 - HP15_3549 0.13 +0.2 3,738,377 + HP15_3549 0.15 +2.9 3,738,385 - HP15_3549 0.15 +0.0 3,738,504 + HP15_3549 0.22 -0.5 3,738,525 + HP15_3549 0.23 -0.3 3,738,685 - HP15_3549 0.33 +0.2 3,738,729 + HP15_3549 0.35 -0.5 3,738,740 - HP15_3549 0.36 +0.2 3,738,774 + HP15_3549 0.38 +0.6 3,738,775 - HP15_3549 0.38 +0.9 3,738,842 - HP15_3549 0.42 +0.3 3,738,924 - HP15_3549 0.47 +0.4
Or see this region's nucleotide sequence