Strain Fitness in Marinobacter adhaerens HP15 around HP15_3539

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3538 and HP15_3539 are separated by 64 nucleotidesHP15_3539 and HP15_3540 are separated by 137 nucleotides HP15_3538: HP15_3538 - methyl-accepting chemotaxis sensory transducer, at 3,724,621 to 3,726,297 _3538 HP15_3539: HP15_3539 - protein containing domain of unknown function DUF1989, at 3,726,362 to 3,726,922 _3539 HP15_3540: HP15_3540 - Cytosine permease-like protein, at 3,727,060 to 3,727,989 _3540 Position (kb) 3726 3727Strain fitness (log2 ratio) -2 -1 0 1at 3725.469 kb on + strand, within HP15_3538at 3725.469 kb on + strand, within HP15_3538at 3725.485 kb on - strand, within HP15_3538at 3725.567 kb on - strand, within HP15_3538at 3725.603 kb on + strand, within HP15_3538at 3725.664 kb on - strand, within HP15_3538at 3726.067 kb on + strand, within HP15_3538at 3726.136 kb on + strandat 3726.136 kb on + strandat 3726.138 kb on + strandat 3726.212 kb on + strandat 3726.215 kb on - strandat 3726.220 kb on - strandat 3726.253 kb on - strandat 3726.358 kb on - strandat 3726.361 kb on - strandat 3726.378 kb on - strandat 3726.413 kb on - strandat 3726.454 kb on + strand, within HP15_3539at 3726.562 kb on - strand, within HP15_3539at 3726.562 kb on - strand, within HP15_3539at 3726.586 kb on + strand, within HP15_3539at 3726.654 kb on + strand, within HP15_3539at 3726.662 kb on - strand, within HP15_3539at 3726.702 kb on + strand, within HP15_3539at 3726.718 kb on - strand, within HP15_3539at 3726.733 kb on - strand, within HP15_3539at 3726.795 kb on + strand, within HP15_3539at 3726.803 kb on - strand, within HP15_3539at 3727.048 kb on - strandat 3727.119 kb on + strandat 3727.122 kb on - strandat 3727.367 kb on - strand, within HP15_3540at 3727.415 kb on + strand, within HP15_3540at 3727.423 kb on - strand, within HP15_3540at 3727.458 kb on + strand, within HP15_3540at 3727.459 kb on + strand, within HP15_3540at 3727.464 kb on + strand, within HP15_3540at 3727.469 kb on + strand, within HP15_3540at 3727.494 kb on - strand, within HP15_3540at 3727.539 kb on - strand, within HP15_3540at 3727.548 kb on - strand, within HP15_3540at 3727.557 kb on + strand, within HP15_3540at 3727.565 kb on - strand, within HP15_3540at 3727.690 kb on + strand, within HP15_3540at 3727.803 kb on - strand, within HP15_3540at 3727.803 kb on - strand, within HP15_3540at 3727.907 kb on + strandat 3727.907 kb on + strandat 3727.907 kb on + strandat 3727.907 kb on + strandat 3727.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,725,469 + HP15_3538 0.51 +0.4
3,725,469 + HP15_3538 0.51 -0.9
3,725,485 - HP15_3538 0.52 -0.0
3,725,567 - HP15_3538 0.56 +0.2
3,725,603 + HP15_3538 0.59 -2.1
3,725,664 - HP15_3538 0.62 -0.2
3,726,067 + HP15_3538 0.86 -0.3
3,726,136 + +0.7
3,726,136 + -1.1
3,726,138 + -0.0
3,726,212 + -0.2
3,726,215 - -1.2
3,726,220 - +0.6
3,726,253 - +1.4
3,726,358 - +0.3
3,726,361 - +0.7
3,726,378 - +0.2
3,726,413 - -0.1
3,726,454 + HP15_3539 0.16 +0.1
3,726,562 - HP15_3539 0.36 -1.6
3,726,562 - HP15_3539 0.36 -0.1
3,726,586 + HP15_3539 0.40 +0.4
3,726,654 + HP15_3539 0.52 -0.4
3,726,662 - HP15_3539 0.53 -0.4
3,726,702 + HP15_3539 0.61 +0.2
3,726,718 - HP15_3539 0.63 +0.2
3,726,733 - HP15_3539 0.66 +0.1
3,726,795 + HP15_3539 0.77 -0.4
3,726,803 - HP15_3539 0.79 -0.1
3,727,048 - -0.3
3,727,119 + -1.3
3,727,122 - +1.0
3,727,367 - HP15_3540 0.33 +0.7
3,727,415 + HP15_3540 0.38 +0.4
3,727,423 - HP15_3540 0.39 -0.5
3,727,458 + HP15_3540 0.43 +1.0
3,727,459 + HP15_3540 0.43 -0.3
3,727,464 + HP15_3540 0.43 -0.4
3,727,469 + HP15_3540 0.44 -1.1
3,727,494 - HP15_3540 0.47 +0.4
3,727,539 - HP15_3540 0.52 -0.8
3,727,548 - HP15_3540 0.52 +0.2
3,727,557 + HP15_3540 0.53 +0.4
3,727,565 - HP15_3540 0.54 +0.1
3,727,690 + HP15_3540 0.68 +0.4
3,727,803 - HP15_3540 0.80 -2.0
3,727,803 - HP15_3540 0.80 -0.4
3,727,907 + -0.3
3,727,907 + -0.6
3,727,907 + +0.1
3,727,907 + -0.1
3,727,921 - -0.1

Or see this region's nucleotide sequence