Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c33960 and PGA1_c33970 are separated by 43 nucleotides PGA1_c33970 and PGA1_c33980 are separated by 159 nucleotides PGA1_c33980 and PGA1_c33990 are separated by 18 nucleotides
PGA1_c33960: PGA1_c33960 - MiaB-like tRNA modifying enzyme, at 3,560,029 to 3,561,294
_c33960
PGA1_c33970: PGA1_c33970 - putative chloramphenicol phosphotransferase-like protein, at 3,561,338 to 3,561,859
_c33970
PGA1_c33980: PGA1_c33980 - cytochrome c1, at 3,562,019 to 3,562,810
_c33980
PGA1_c33990: PGA1_c33990 - cytochrome b, at 3,562,829 to 3,564,163
_c33990
Position (kb)
3561
3562 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3560.482 kb on - strand, within PGA1_c33960 at 3560.482 kb on - strand, within PGA1_c33960 at 3560.531 kb on + strand, within PGA1_c33960 at 3560.685 kb on + strand, within PGA1_c33960 at 3560.764 kb on + strand, within PGA1_c33960 at 3560.848 kb on - strand, within PGA1_c33960 at 3560.984 kb on - strand, within PGA1_c33960 at 3561.020 kb on - strand, within PGA1_c33960 at 3561.032 kb on - strand, within PGA1_c33960 at 3561.038 kb on - strand, within PGA1_c33960 at 3561.068 kb on - strand, within PGA1_c33960 at 3561.155 kb on - strand, within PGA1_c33960 at 3561.155 kb on - strand, within PGA1_c33960 at 3561.155 kb on - strand, within PGA1_c33960 at 3561.215 kb on + strand at 3561.290 kb on - strand at 3561.311 kb on + strand at 3561.333 kb on + strand at 3561.341 kb on + strand at 3561.441 kb on + strand, within PGA1_c33970 at 3561.529 kb on - strand, within PGA1_c33970 at 3561.566 kb on - strand, within PGA1_c33970 at 3561.608 kb on + strand, within PGA1_c33970 at 3561.618 kb on - strand, within PGA1_c33970 at 3561.699 kb on - strand, within PGA1_c33970 at 3561.699 kb on - strand, within PGA1_c33970 at 3561.741 kb on + strand, within PGA1_c33970 at 3561.747 kb on - strand, within PGA1_c33970 at 3561.751 kb on + strand, within PGA1_c33970 at 3561.817 kb on - strand at 3561.828 kb on + strand at 3561.828 kb on + strand at 3561.836 kb on - strand at 3561.836 kb on - strand at 3561.863 kb on - strand at 3561.865 kb on + strand at 3561.923 kb on + strand at 3561.931 kb on - strand at 3561.931 kb on - strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.998 kb on - strand at 3562.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 3,560,482 - PGA1_c33960 0.36 +0.3 3,560,482 - PGA1_c33960 0.36 -0.1 3,560,531 + PGA1_c33960 0.40 +0.1 3,560,685 + PGA1_c33960 0.52 +0.2 3,560,764 + PGA1_c33960 0.58 -1.9 3,560,848 - PGA1_c33960 0.65 +0.5 3,560,984 - PGA1_c33960 0.75 +0.7 3,561,020 - PGA1_c33960 0.78 +0.3 3,561,032 - PGA1_c33960 0.79 -1.7 3,561,038 - PGA1_c33960 0.80 -1.0 3,561,068 - PGA1_c33960 0.82 +1.8 3,561,155 - PGA1_c33960 0.89 +2.7 3,561,155 - PGA1_c33960 0.89 +0.3 3,561,155 - PGA1_c33960 0.89 +0.4 3,561,215 + -1.1 3,561,290 - -0.6 3,561,311 + -0.7 3,561,333 + -0.1 3,561,341 + -0.1 3,561,441 + PGA1_c33970 0.20 +0.7 3,561,529 - PGA1_c33970 0.37 +1.8 3,561,566 - PGA1_c33970 0.44 +0.4 3,561,608 + PGA1_c33970 0.52 +1.3 3,561,618 - PGA1_c33970 0.54 +0.2 3,561,699 - PGA1_c33970 0.69 +0.5 3,561,699 - PGA1_c33970 0.69 +0.3 3,561,741 + PGA1_c33970 0.77 -0.8 3,561,747 - PGA1_c33970 0.78 +0.5 3,561,751 + PGA1_c33970 0.79 +0.4 3,561,817 - -0.7 3,561,828 + +1.1 3,561,828 + +1.2 3,561,836 - -0.3 3,561,836 - +0.8 3,561,863 - -0.7 3,561,865 + -0.2 3,561,923 + -0.8 3,561,931 - -0.5 3,561,931 - -1.2 3,561,973 + +1.0 3,561,973 + +0.2 3,561,973 + +0.4 3,561,973 + +1.6 3,561,973 + -0.3 3,561,973 + +0.5 3,561,973 + +0.2 3,561,973 + -1.8 3,561,973 + +1.9 3,561,973 + -0.7 3,561,981 - -0.5 3,561,981 - -0.1 3,561,981 - -0.3 3,561,981 - -0.3 3,561,981 - -0.1 3,561,981 - -0.9 3,561,981 - -0.4 3,561,981 - +0.1 3,561,981 - +0.5 3,561,981 - -2.8 3,561,981 - -0.1 3,561,981 - -0.4 3,561,981 - -1.2 3,561,981 - +0.7 3,561,998 - -0.3 3,562,055 - +0.3
Or see this region's nucleotide sequence