Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33970

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c33960 and PGA1_c33970 are separated by 43 nucleotidesPGA1_c33970 and PGA1_c33980 are separated by 159 nucleotidesPGA1_c33980 and PGA1_c33990 are separated by 18 nucleotides PGA1_c33960: PGA1_c33960 - MiaB-like tRNA modifying enzyme, at 3,560,029 to 3,561,294 _c33960 PGA1_c33970: PGA1_c33970 - putative chloramphenicol phosphotransferase-like protein, at 3,561,338 to 3,561,859 _c33970 PGA1_c33980: PGA1_c33980 - cytochrome c1, at 3,562,019 to 3,562,810 _c33980 PGA1_c33990: PGA1_c33990 - cytochrome b, at 3,562,829 to 3,564,163 _c33990 Position (kb) 3561 3562Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3560.482 kb on - strand, within PGA1_c33960at 3560.482 kb on - strand, within PGA1_c33960at 3560.531 kb on + strand, within PGA1_c33960at 3560.685 kb on + strand, within PGA1_c33960at 3560.764 kb on + strand, within PGA1_c33960at 3560.848 kb on - strand, within PGA1_c33960at 3560.984 kb on - strand, within PGA1_c33960at 3561.020 kb on - strand, within PGA1_c33960at 3561.032 kb on - strand, within PGA1_c33960at 3561.038 kb on - strand, within PGA1_c33960at 3561.068 kb on - strand, within PGA1_c33960at 3561.155 kb on - strand, within PGA1_c33960at 3561.155 kb on - strand, within PGA1_c33960at 3561.155 kb on - strand, within PGA1_c33960at 3561.215 kb on + strandat 3561.290 kb on - strandat 3561.311 kb on + strandat 3561.333 kb on + strandat 3561.341 kb on + strandat 3561.441 kb on + strand, within PGA1_c33970at 3561.529 kb on - strand, within PGA1_c33970at 3561.566 kb on - strand, within PGA1_c33970at 3561.608 kb on + strand, within PGA1_c33970at 3561.618 kb on - strand, within PGA1_c33970at 3561.699 kb on - strand, within PGA1_c33970at 3561.699 kb on - strand, within PGA1_c33970at 3561.741 kb on + strand, within PGA1_c33970at 3561.747 kb on - strand, within PGA1_c33970at 3561.751 kb on + strand, within PGA1_c33970at 3561.817 kb on - strandat 3561.828 kb on + strandat 3561.828 kb on + strandat 3561.836 kb on - strandat 3561.836 kb on - strandat 3561.863 kb on - strandat 3561.865 kb on + strandat 3561.923 kb on + strandat 3561.931 kb on - strandat 3561.931 kb on - strandat 3561.973 kb on + strandat 3561.973 kb on + strandat 3561.973 kb on + strandat 3561.973 kb on + strandat 3561.973 kb on + strandat 3561.973 kb on + strandat 3561.973 kb on + strandat 3561.973 kb on + strandat 3561.973 kb on + strandat 3561.973 kb on + strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.981 kb on - strandat 3561.998 kb on - strandat 3562.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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3,560,482 - PGA1_c33960 0.36 +0.3
3,560,482 - PGA1_c33960 0.36 -0.1
3,560,531 + PGA1_c33960 0.40 +0.1
3,560,685 + PGA1_c33960 0.52 +0.2
3,560,764 + PGA1_c33960 0.58 -1.9
3,560,848 - PGA1_c33960 0.65 +0.5
3,560,984 - PGA1_c33960 0.75 +0.7
3,561,020 - PGA1_c33960 0.78 +0.3
3,561,032 - PGA1_c33960 0.79 -1.7
3,561,038 - PGA1_c33960 0.80 -1.0
3,561,068 - PGA1_c33960 0.82 +1.8
3,561,155 - PGA1_c33960 0.89 +2.7
3,561,155 - PGA1_c33960 0.89 +0.3
3,561,155 - PGA1_c33960 0.89 +0.4
3,561,215 + -1.1
3,561,290 - -0.6
3,561,311 + -0.7
3,561,333 + -0.1
3,561,341 + -0.1
3,561,441 + PGA1_c33970 0.20 +0.7
3,561,529 - PGA1_c33970 0.37 +1.8
3,561,566 - PGA1_c33970 0.44 +0.4
3,561,608 + PGA1_c33970 0.52 +1.3
3,561,618 - PGA1_c33970 0.54 +0.2
3,561,699 - PGA1_c33970 0.69 +0.5
3,561,699 - PGA1_c33970 0.69 +0.3
3,561,741 + PGA1_c33970 0.77 -0.8
3,561,747 - PGA1_c33970 0.78 +0.5
3,561,751 + PGA1_c33970 0.79 +0.4
3,561,817 - -0.7
3,561,828 + +1.1
3,561,828 + +1.2
3,561,836 - -0.3
3,561,836 - +0.8
3,561,863 - -0.7
3,561,865 + -0.2
3,561,923 + -0.8
3,561,931 - -0.5
3,561,931 - -1.2
3,561,973 + +1.0
3,561,973 + +0.2
3,561,973 + +0.4
3,561,973 + +1.6
3,561,973 + -0.3
3,561,973 + +0.5
3,561,973 + +0.2
3,561,973 + -1.8
3,561,973 + +1.9
3,561,973 + -0.7
3,561,981 - -0.5
3,561,981 - -0.1
3,561,981 - -0.3
3,561,981 - -0.3
3,561,981 - -0.1
3,561,981 - -0.9
3,561,981 - -0.4
3,561,981 - +0.1
3,561,981 - +0.5
3,561,981 - -2.8
3,561,981 - -0.1
3,561,981 - -0.4
3,561,981 - -1.2
3,561,981 - +0.7
3,561,998 - -0.3
3,562,055 - +0.3

Or see this region's nucleotide sequence