Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03370

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03360 and PGA1_c03365 are separated by 156 nucleotidesPGA1_c03365 and PGA1_c03370 are separated by 163 nucleotidesPGA1_c03370 and PGA1_c03380 are separated by 109 nucleotides PGA1_c03360: PGA1_c03360 - Predicted O-methyltransferase, at 322,693 to 323,460 _c03360 PGA1_c03365: PGA1_c03365 - Uncharacterized small protein, at 323,617 to 323,796 _c03365 PGA1_c03370: PGA1_c03370 - hypothetical protein, at 323,960 to 324,166 _c03370 PGA1_c03380: PGA1_c03380 - putative glycine cleavage system transcriptional activator, at 324,276 to 325,157 _c03380 Position (kb) 323 324 325Strain fitness (log2 ratio) -2 -1 0 1 2 3at 323.059 kb on + strand, within PGA1_c03360at 323.059 kb on + strand, within PGA1_c03360at 323.082 kb on - strand, within PGA1_c03360at 323.092 kb on - strand, within PGA1_c03360at 323.092 kb on - strand, within PGA1_c03360at 323.092 kb on - strand, within PGA1_c03360at 323.242 kb on - strand, within PGA1_c03360at 323.440 kb on + strandat 323.445 kb on + strandat 323.445 kb on + strandat 323.445 kb on + strandat 323.445 kb on + strandat 323.504 kb on - strandat 323.635 kb on - strand, within PGA1_c03365at 323.685 kb on + strand, within PGA1_c03365at 323.702 kb on + strand, within PGA1_c03365at 323.777 kb on - strand, within PGA1_c03365at 323.777 kb on - strand, within PGA1_c03365at 323.777 kb on - strand, within PGA1_c03365at 323.813 kb on + strandat 323.847 kb on - strandat 323.847 kb on - strandat 323.868 kb on + strandat 323.915 kb on - strandat 323.923 kb on + strandat 324.017 kb on + strand, within PGA1_c03370at 324.017 kb on + strand, within PGA1_c03370at 324.024 kb on + strand, within PGA1_c03370at 324.087 kb on - strand, within PGA1_c03370at 324.120 kb on + strand, within PGA1_c03370at 324.128 kb on + strand, within PGA1_c03370at 324.128 kb on + strand, within PGA1_c03370at 324.199 kb on - strandat 324.222 kb on + strandat 324.227 kb on + strandat 324.232 kb on + strandat 324.235 kb on - strandat 324.235 kb on - strandat 324.235 kb on - strandat 324.235 kb on - strandat 324.240 kb on - strandat 324.277 kb on + strandat 324.278 kb on + strandat 324.278 kb on + strandat 324.278 kb on + strandat 324.286 kb on - strandat 324.286 kb on - strandat 324.286 kb on - strandat 324.339 kb on - strandat 324.370 kb on + strand, within PGA1_c03380at 324.420 kb on - strand, within PGA1_c03380at 324.434 kb on - strand, within PGA1_c03380at 324.503 kb on - strand, within PGA1_c03380at 324.503 kb on - strand, within PGA1_c03380at 324.503 kb on - strand, within PGA1_c03380at 324.503 kb on - strand, within PGA1_c03380at 324.516 kb on + strand, within PGA1_c03380at 324.549 kb on + strand, within PGA1_c03380at 324.557 kb on - strand, within PGA1_c03380at 324.557 kb on - strand, within PGA1_c03380at 324.571 kb on + strand, within PGA1_c03380at 324.573 kb on + strand, within PGA1_c03380at 324.615 kb on - strand, within PGA1_c03380at 324.618 kb on - strand, within PGA1_c03380at 324.623 kb on - strand, within PGA1_c03380at 324.680 kb on + strand, within PGA1_c03380at 324.718 kb on + strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.755 kb on + strand, within PGA1_c03380at 324.763 kb on - strand, within PGA1_c03380at 324.768 kb on + strand, within PGA1_c03380at 324.815 kb on - strand, within PGA1_c03380at 324.820 kb on - strand, within PGA1_c03380at 324.820 kb on - strand, within PGA1_c03380at 324.912 kb on - strand, within PGA1_c03380at 324.951 kb on + strand, within PGA1_c03380at 324.951 kb on + strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.966 kb on - strand, within PGA1_c03380at 324.966 kb on - strand, within PGA1_c03380at 324.984 kb on - strand, within PGA1_c03380at 325.045 kb on - strand, within PGA1_c03380at 325.072 kb on + strandat 325.131 kb on - strandat 325.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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323,059 + PGA1_c03360 0.48 -0.7
323,059 + PGA1_c03360 0.48 -0.2
323,082 - PGA1_c03360 0.51 -2.5
323,092 - PGA1_c03360 0.52 -0.2
323,092 - PGA1_c03360 0.52 -1.2
323,092 - PGA1_c03360 0.52 -1.1
323,242 - PGA1_c03360 0.71 +0.7
323,440 + -1.5
323,445 + +0.8
323,445 + -0.2
323,445 + -0.1
323,445 + -1.2
323,504 - -1.0
323,635 - PGA1_c03365 0.10 -1.6
323,685 + PGA1_c03365 0.38 +0.5
323,702 + PGA1_c03365 0.47 -1.9
323,777 - PGA1_c03365 0.89 +0.1
323,777 - PGA1_c03365 0.89 +1.2
323,777 - PGA1_c03365 0.89 -0.2
323,813 + -1.2
323,847 - +1.2
323,847 - +0.6
323,868 + +0.2
323,915 - -0.2
323,923 + -0.0
324,017 + PGA1_c03370 0.28 -1.0
324,017 + PGA1_c03370 0.28 -0.8
324,024 + PGA1_c03370 0.31 -0.5
324,087 - PGA1_c03370 0.61 -0.9
324,120 + PGA1_c03370 0.77 +0.6
324,128 + PGA1_c03370 0.81 -0.6
324,128 + PGA1_c03370 0.81 -0.7
324,199 - -1.2
324,222 + -1.5
324,227 + -1.2
324,232 + +0.2
324,235 - -2.2
324,235 - -0.3
324,235 - +0.5
324,235 - -0.3
324,240 - +0.2
324,277 + +0.2
324,278 + -1.0
324,278 + -0.6
324,278 + +0.5
324,286 - -1.2
324,286 - -0.3
324,286 - -0.2
324,339 - +0.0
324,370 + PGA1_c03380 0.11 -0.6
324,420 - PGA1_c03380 0.16 +1.6
324,434 - PGA1_c03380 0.18 -0.2
324,503 - PGA1_c03380 0.26 -1.8
324,503 - PGA1_c03380 0.26 -0.3
324,503 - PGA1_c03380 0.26 -0.2
324,503 - PGA1_c03380 0.26 +0.8
324,516 + PGA1_c03380 0.27 +0.2
324,549 + PGA1_c03380 0.31 +1.5
324,557 - PGA1_c03380 0.32 -0.2
324,557 - PGA1_c03380 0.32 +0.2
324,571 + PGA1_c03380 0.33 +0.3
324,573 + PGA1_c03380 0.34 -0.5
324,615 - PGA1_c03380 0.38 +1.3
324,618 - PGA1_c03380 0.39 +0.3
324,623 - PGA1_c03380 0.39 +1.1
324,680 + PGA1_c03380 0.46 -0.3
324,718 + PGA1_c03380 0.50 -2.3
324,726 - PGA1_c03380 0.51 -0.1
324,726 - PGA1_c03380 0.51 +0.4
324,726 - PGA1_c03380 0.51 +3.6
324,755 + PGA1_c03380 0.54 +0.2
324,763 - PGA1_c03380 0.55 -0.7
324,768 + PGA1_c03380 0.56 -0.2
324,815 - PGA1_c03380 0.61 +0.3
324,820 - PGA1_c03380 0.62 +1.0
324,820 - PGA1_c03380 0.62 -0.6
324,912 - PGA1_c03380 0.72 +1.3
324,951 + PGA1_c03380 0.77 -0.4
324,951 + PGA1_c03380 0.77 +0.5
324,959 - PGA1_c03380 0.77 -0.8
324,959 - PGA1_c03380 0.77 -0.7
324,959 - PGA1_c03380 0.77 +1.0
324,959 - PGA1_c03380 0.77 +1.6
324,959 - PGA1_c03380 0.77 -0.6
324,966 - PGA1_c03380 0.78 -0.0
324,966 - PGA1_c03380 0.78 -1.2
324,984 - PGA1_c03380 0.80 +0.8
325,045 - PGA1_c03380 0.87 +0.3
325,072 + +0.1
325,131 - +1.5
325,155 - -2.3

Or see this region's nucleotide sequence