Strain Fitness in Marinobacter adhaerens HP15 around HP15_3167

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3165 and HP15_3166 are separated by 12 nucleotidesHP15_3166 and HP15_3167 overlap by 4 nucleotidesHP15_3167 and HP15_3168 are separated by 163 nucleotides HP15_3165: HP15_3165 - pentapeptide repeat family protein, at 3,318,986 to 3,319,639 _3165 HP15_3166: HP15_3166 - two component transcriptional regulator, LuxR family, at 3,319,652 to 3,320,308 _3166 HP15_3167: HP15_3167 - integral membrane sensor signal transduction histidine kinase, at 3,320,305 to 3,321,528 _3167 HP15_3168: HP15_3168 - conserved hypothetical protein, secreted, at 3,321,692 to 3,322,864 _3168 Position (kb) 3320 3321 3322Strain fitness (log2 ratio) -2 -1 0 1 2at 3319.318 kb on + strand, within HP15_3165at 3319.363 kb on + strand, within HP15_3165at 3319.371 kb on + strand, within HP15_3165at 3319.371 kb on - strand, within HP15_3165at 3319.432 kb on + strand, within HP15_3165at 3319.440 kb on - strand, within HP15_3165at 3319.483 kb on + strand, within HP15_3165at 3319.551 kb on + strand, within HP15_3165at 3319.599 kb on + strandat 3319.599 kb on + strandat 3319.607 kb on - strandat 3319.607 kb on - strandat 3319.617 kb on + strandat 3319.696 kb on - strandat 3319.777 kb on + strand, within HP15_3166at 3319.872 kb on + strand, within HP15_3166at 3320.188 kb on + strand, within HP15_3166at 3320.193 kb on + strand, within HP15_3166at 3320.205 kb on - strand, within HP15_3166at 3320.206 kb on - strand, within HP15_3166at 3320.423 kb on - strandat 3320.484 kb on + strand, within HP15_3167at 3320.492 kb on - strand, within HP15_3167at 3320.492 kb on - strand, within HP15_3167at 3320.492 kb on - strand, within HP15_3167at 3320.568 kb on - strand, within HP15_3167at 3320.623 kb on + strand, within HP15_3167at 3320.628 kb on + strand, within HP15_3167at 3320.638 kb on - strand, within HP15_3167at 3320.854 kb on - strand, within HP15_3167at 3320.874 kb on + strand, within HP15_3167at 3320.962 kb on + strand, within HP15_3167at 3320.975 kb on - strand, within HP15_3167at 3321.039 kb on - strand, within HP15_3167at 3321.091 kb on - strand, within HP15_3167at 3321.091 kb on - strand, within HP15_3167at 3321.091 kb on - strand, within HP15_3167at 3321.236 kb on + strand, within HP15_3167at 3321.244 kb on - strand, within HP15_3167at 3321.379 kb on + strand, within HP15_3167at 3321.387 kb on - strand, within HP15_3167at 3321.449 kb on + strandat 3321.475 kb on + strandat 3321.661 kb on - strandat 3321.915 kb on - strand, within HP15_3168at 3321.923 kb on + strand, within HP15_3168at 3321.923 kb on + strand, within HP15_3168at 3322.154 kb on - strand, within HP15_3168at 3322.308 kb on - strand, within HP15_3168at 3322.363 kb on + strand, within HP15_3168at 3322.366 kb on - strand, within HP15_3168

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
3,319,318 + HP15_3165 0.51 -0.7
3,319,363 + HP15_3165 0.58 +0.3
3,319,371 + HP15_3165 0.59 -0.4
3,319,371 - HP15_3165 0.59 -0.8
3,319,432 + HP15_3165 0.68 +0.0
3,319,440 - HP15_3165 0.69 -0.1
3,319,483 + HP15_3165 0.76 -1.1
3,319,551 + HP15_3165 0.86 -1.1
3,319,599 + -0.8
3,319,599 + -0.5
3,319,607 - +1.4
3,319,607 - -2.0
3,319,617 + +0.6
3,319,696 - -1.1
3,319,777 + HP15_3166 0.19 -0.8
3,319,872 + HP15_3166 0.33 -0.6
3,320,188 + HP15_3166 0.82 +0.2
3,320,193 + HP15_3166 0.82 -2.1
3,320,205 - HP15_3166 0.84 +0.5
3,320,206 - HP15_3166 0.84 +0.1
3,320,423 - -0.9
3,320,484 + HP15_3167 0.15 -0.9
3,320,492 - HP15_3167 0.15 -0.9
3,320,492 - HP15_3167 0.15 +2.7
3,320,492 - HP15_3167 0.15 -0.6
3,320,568 - HP15_3167 0.21 -0.8
3,320,623 + HP15_3167 0.26 -0.1
3,320,628 + HP15_3167 0.26 -0.3
3,320,638 - HP15_3167 0.27 -1.5
3,320,854 - HP15_3167 0.45 -1.6
3,320,874 + HP15_3167 0.46 -0.7
3,320,962 + HP15_3167 0.54 -0.7
3,320,975 - HP15_3167 0.55 -1.4
3,321,039 - HP15_3167 0.60 -0.7
3,321,091 - HP15_3167 0.64 +0.1
3,321,091 - HP15_3167 0.64 -0.1
3,321,091 - HP15_3167 0.64 +2.2
3,321,236 + HP15_3167 0.76 -0.1
3,321,244 - HP15_3167 0.77 -0.7
3,321,379 + HP15_3167 0.88 -1.3
3,321,387 - HP15_3167 0.88 +0.0
3,321,449 + +0.5
3,321,475 + +0.0
3,321,661 - -0.3
3,321,915 - HP15_3168 0.19 +0.5
3,321,923 + HP15_3168 0.20 +0.3
3,321,923 + HP15_3168 0.20 +0.4
3,322,154 - HP15_3168 0.39 -0.7
3,322,308 - HP15_3168 0.53 +0.1
3,322,363 + HP15_3168 0.57 -0.9
3,322,366 - HP15_3168 0.57 -0.1

Or see this region's nucleotide sequence