Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3165 and HP15_3166 are separated by 12 nucleotides HP15_3166 and HP15_3167 overlap by 4 nucleotides HP15_3167 and HP15_3168 are separated by 163 nucleotides
HP15_3165: HP15_3165 - pentapeptide repeat family protein, at 3,318,986 to 3,319,639
_3165
HP15_3166: HP15_3166 - two component transcriptional regulator, LuxR family, at 3,319,652 to 3,320,308
_3166
HP15_3167: HP15_3167 - integral membrane sensor signal transduction histidine kinase, at 3,320,305 to 3,321,528
_3167
HP15_3168: HP15_3168 - conserved hypothetical protein, secreted, at 3,321,692 to 3,322,864
_3168
Position (kb)
3320
3321
3322 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3319.318 kb on + strand, within HP15_3165 at 3319.363 kb on + strand, within HP15_3165 at 3319.371 kb on + strand, within HP15_3165 at 3319.371 kb on - strand, within HP15_3165 at 3319.432 kb on + strand, within HP15_3165 at 3319.440 kb on - strand, within HP15_3165 at 3319.483 kb on + strand, within HP15_3165 at 3319.551 kb on + strand, within HP15_3165 at 3319.599 kb on + strand at 3319.599 kb on + strand at 3319.607 kb on - strand at 3319.607 kb on - strand at 3319.617 kb on + strand at 3319.696 kb on - strand at 3319.777 kb on + strand, within HP15_3166 at 3319.872 kb on + strand, within HP15_3166 at 3320.188 kb on + strand, within HP15_3166 at 3320.193 kb on + strand, within HP15_3166 at 3320.205 kb on - strand, within HP15_3166 at 3320.206 kb on - strand, within HP15_3166 at 3320.423 kb on - strand at 3320.484 kb on + strand, within HP15_3167 at 3320.492 kb on - strand, within HP15_3167 at 3320.492 kb on - strand, within HP15_3167 at 3320.492 kb on - strand, within HP15_3167 at 3320.568 kb on - strand, within HP15_3167 at 3320.623 kb on + strand, within HP15_3167 at 3320.628 kb on + strand, within HP15_3167 at 3320.638 kb on - strand, within HP15_3167 at 3320.854 kb on - strand, within HP15_3167 at 3320.874 kb on + strand, within HP15_3167 at 3320.962 kb on + strand, within HP15_3167 at 3320.975 kb on - strand, within HP15_3167 at 3321.039 kb on - strand, within HP15_3167 at 3321.091 kb on - strand, within HP15_3167 at 3321.091 kb on - strand, within HP15_3167 at 3321.091 kb on - strand, within HP15_3167 at 3321.236 kb on + strand, within HP15_3167 at 3321.244 kb on - strand, within HP15_3167 at 3321.379 kb on + strand, within HP15_3167 at 3321.387 kb on - strand, within HP15_3167 at 3321.449 kb on + strand at 3321.475 kb on + strand at 3321.661 kb on - strand at 3321.915 kb on - strand, within HP15_3168 at 3321.923 kb on + strand, within HP15_3168 at 3321.923 kb on + strand, within HP15_3168 at 3322.154 kb on - strand, within HP15_3168 at 3322.308 kb on - strand, within HP15_3168 at 3322.363 kb on + strand, within HP15_3168 at 3322.366 kb on - strand, within HP15_3168
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,319,318 + HP15_3165 0.51 -0.7 3,319,363 + HP15_3165 0.58 +0.3 3,319,371 + HP15_3165 0.59 -0.4 3,319,371 - HP15_3165 0.59 -0.8 3,319,432 + HP15_3165 0.68 +0.0 3,319,440 - HP15_3165 0.69 -0.1 3,319,483 + HP15_3165 0.76 -1.1 3,319,551 + HP15_3165 0.86 -1.1 3,319,599 + -0.8 3,319,599 + -0.5 3,319,607 - +1.4 3,319,607 - -2.0 3,319,617 + +0.6 3,319,696 - -1.1 3,319,777 + HP15_3166 0.19 -0.8 3,319,872 + HP15_3166 0.33 -0.6 3,320,188 + HP15_3166 0.82 +0.2 3,320,193 + HP15_3166 0.82 -2.1 3,320,205 - HP15_3166 0.84 +0.5 3,320,206 - HP15_3166 0.84 +0.1 3,320,423 - -0.9 3,320,484 + HP15_3167 0.15 -0.9 3,320,492 - HP15_3167 0.15 -0.9 3,320,492 - HP15_3167 0.15 +2.7 3,320,492 - HP15_3167 0.15 -0.6 3,320,568 - HP15_3167 0.21 -0.8 3,320,623 + HP15_3167 0.26 -0.1 3,320,628 + HP15_3167 0.26 -0.3 3,320,638 - HP15_3167 0.27 -1.5 3,320,854 - HP15_3167 0.45 -1.6 3,320,874 + HP15_3167 0.46 -0.7 3,320,962 + HP15_3167 0.54 -0.7 3,320,975 - HP15_3167 0.55 -1.4 3,321,039 - HP15_3167 0.60 -0.7 3,321,091 - HP15_3167 0.64 +0.1 3,321,091 - HP15_3167 0.64 -0.1 3,321,091 - HP15_3167 0.64 +2.2 3,321,236 + HP15_3167 0.76 -0.1 3,321,244 - HP15_3167 0.77 -0.7 3,321,379 + HP15_3167 0.88 -1.3 3,321,387 - HP15_3167 0.88 +0.0 3,321,449 + +0.5 3,321,475 + +0.0 3,321,661 - -0.3 3,321,915 - HP15_3168 0.19 +0.5 3,321,923 + HP15_3168 0.20 +0.3 3,321,923 + HP15_3168 0.20 +0.4 3,322,154 - HP15_3168 0.39 -0.7 3,322,308 - HP15_3168 0.53 +0.1 3,322,363 + HP15_3168 0.57 -0.9 3,322,366 - HP15_3168 0.57 -0.1
Or see this region's nucleotide sequence