Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3138 and HP15_3139 overlap by 1 nucleotides HP15_3139 and HP15_3140 overlap by 4 nucleotides HP15_3140 and HP15_3141 are separated by 402 nucleotides
HP15_3138: HP15_3138 - coenzyme PQQ synthesis D, at 3,291,808 to 3,292,083
_3138
HP15_3139: HP15_3139 - pyrroloquinoline quinone biosynthesis protein PqqC, at 3,292,083 to 3,292,838
_3139
HP15_3140: HP15_3140 - pyrroloquinoline quinone biosynthesis protein PqqB, at 3,292,835 to 3,293,764
_3140
HP15_3141: HP15_3141 - transcriptional regulator, TetR family, at 3,294,167 to 3,294,808
_3141
Position (kb)
3292
3293
3294 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3291.892 kb on + strand, within HP15_3138 at 3291.942 kb on - strand, within HP15_3138 at 3291.992 kb on + strand, within HP15_3138 at 3292.002 kb on + strand, within HP15_3138 at 3292.088 kb on - strand at 3292.088 kb on - strand at 3292.173 kb on + strand, within HP15_3139 at 3292.182 kb on - strand, within HP15_3139 at 3292.182 kb on - strand, within HP15_3139 at 3292.218 kb on + strand, within HP15_3139 at 3292.320 kb on + strand, within HP15_3139 at 3292.368 kb on - strand, within HP15_3139 at 3292.471 kb on + strand, within HP15_3139 at 3292.479 kb on - strand, within HP15_3139 at 3292.502 kb on + strand, within HP15_3139 at 3292.539 kb on + strand, within HP15_3139 at 3292.609 kb on - strand, within HP15_3139 at 3292.663 kb on + strand, within HP15_3139 at 3292.717 kb on - strand, within HP15_3139 at 3292.738 kb on + strand, within HP15_3139 at 3292.827 kb on - strand at 3292.833 kb on + strand at 3292.909 kb on + strand at 3292.936 kb on + strand, within HP15_3140 at 3293.024 kb on - strand, within HP15_3140 at 3293.031 kb on + strand, within HP15_3140 at 3293.067 kb on - strand, within HP15_3140 at 3293.104 kb on + strand, within HP15_3140 at 3293.220 kb on - strand, within HP15_3140 at 3293.220 kb on - strand, within HP15_3140 at 3293.220 kb on - strand, within HP15_3140 at 3293.230 kb on + strand, within HP15_3140 at 3293.365 kb on - strand, within HP15_3140 at 3293.408 kb on + strand, within HP15_3140 at 3293.484 kb on - strand, within HP15_3140 at 3293.564 kb on + strand, within HP15_3140 at 3293.660 kb on - strand, within HP15_3140 at 3293.802 kb on - strand at 3293.802 kb on - strand at 3293.817 kb on - strand at 3293.833 kb on + strand at 3293.876 kb on + strand at 3293.876 kb on + strand at 3293.898 kb on + strand at 3293.906 kb on - strand at 3294.019 kb on + strand at 3294.084 kb on - strand at 3294.174 kb on + strand at 3294.240 kb on + strand, within HP15_3141 at 3294.250 kb on + strand, within HP15_3141 at 3294.286 kb on + strand, within HP15_3141 at 3294.294 kb on - strand, within HP15_3141 at 3294.389 kb on - strand, within HP15_3141 at 3294.398 kb on + strand, within HP15_3141 at 3294.443 kb on - strand, within HP15_3141 at 3294.456 kb on + strand, within HP15_3141 at 3294.478 kb on - strand, within HP15_3141 at 3294.568 kb on + strand, within HP15_3141 at 3294.576 kb on - strand, within HP15_3141 at 3294.576 kb on - strand, within HP15_3141 at 3294.616 kb on + strand, within HP15_3141 at 3294.616 kb on - strand, within HP15_3141 at 3294.642 kb on + strand, within HP15_3141 at 3294.671 kb on + strand, within HP15_3141 at 3294.679 kb on - strand, within HP15_3141 at 3294.679 kb on - strand, within HP15_3141 at 3294.733 kb on - strand, within HP15_3141
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,291,892 + HP15_3138 0.30 -0.6 3,291,942 - HP15_3138 0.49 -0.9 3,291,992 + HP15_3138 0.67 -0.5 3,292,002 + HP15_3138 0.70 -0.9 3,292,088 - +0.8 3,292,088 - -2.1 3,292,173 + HP15_3139 0.12 -0.0 3,292,182 - HP15_3139 0.13 -1.1 3,292,182 - HP15_3139 0.13 -0.9 3,292,218 + HP15_3139 0.18 -0.2 3,292,320 + HP15_3139 0.31 +0.3 3,292,368 - HP15_3139 0.38 +1.2 3,292,471 + HP15_3139 0.51 -0.6 3,292,479 - HP15_3139 0.52 -1.7 3,292,502 + HP15_3139 0.55 +1.3 3,292,539 + HP15_3139 0.60 -1.7 3,292,609 - HP15_3139 0.70 +0.0 3,292,663 + HP15_3139 0.77 -1.1 3,292,717 - HP15_3139 0.84 -0.4 3,292,738 + HP15_3139 0.87 -0.9 3,292,827 - +0.0 3,292,833 + -1.0 3,292,909 + -0.7 3,292,936 + HP15_3140 0.11 +0.1 3,293,024 - HP15_3140 0.20 -0.9 3,293,031 + HP15_3140 0.21 -0.7 3,293,067 - HP15_3140 0.25 -1.7 3,293,104 + HP15_3140 0.29 -0.2 3,293,220 - HP15_3140 0.41 -0.6 3,293,220 - HP15_3140 0.41 -0.8 3,293,220 - HP15_3140 0.41 -0.8 3,293,230 + HP15_3140 0.42 -0.4 3,293,365 - HP15_3140 0.57 -1.1 3,293,408 + HP15_3140 0.62 -0.1 3,293,484 - HP15_3140 0.70 -0.5 3,293,564 + HP15_3140 0.78 -2.1 3,293,660 - HP15_3140 0.89 +0.0 3,293,802 - -1.0 3,293,802 - -1.6 3,293,817 - -0.3 3,293,833 + +0.2 3,293,876 + -2.7 3,293,876 + -0.0 3,293,898 + +0.1 3,293,906 - -2.4 3,294,019 + +0.5 3,294,084 - -0.3 3,294,174 + -0.3 3,294,240 + HP15_3141 0.11 +0.9 3,294,250 + HP15_3141 0.13 +1.1 3,294,286 + HP15_3141 0.19 +0.1 3,294,294 - HP15_3141 0.20 +0.7 3,294,389 - HP15_3141 0.35 -1.9 3,294,398 + HP15_3141 0.36 +0.0 3,294,443 - HP15_3141 0.43 -0.0 3,294,456 + HP15_3141 0.45 +0.9 3,294,478 - HP15_3141 0.48 +0.9 3,294,568 + HP15_3141 0.62 +0.2 3,294,576 - HP15_3141 0.64 +2.1 3,294,576 - HP15_3141 0.64 -0.1 3,294,616 + HP15_3141 0.70 -1.1 3,294,616 - HP15_3141 0.70 +0.0 3,294,642 + HP15_3141 0.74 -1.1 3,294,671 + HP15_3141 0.79 +0.4 3,294,679 - HP15_3141 0.80 -1.5 3,294,679 - HP15_3141 0.80 +0.4 3,294,733 - HP15_3141 0.88 +0.3
Or see this region's nucleotide sequence