Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3132 and HP15_3133 are separated by 67 nucleotides HP15_3133 and HP15_3134 are separated by 84 nucleotides HP15_3134 and HP15_3135 overlap by 17 nucleotides
HP15_3132: HP15_3132 - fumarate hydratase class II, at 3,284,016 to 3,285,392
_3132
HP15_3133: HP15_3133 - conserved hypothetical protein, at 3,285,460 to 3,285,744
_3133
HP15_3134: HP15_3134 - two-component system sensor protein, at 3,285,829 to 3,287,595
_3134
HP15_3135: HP15_3135 - ethanol oxidation regulatory protein ercA (from data) , at 3,287,579 to 3,288,742
_3135
Position (kb)
3285
3286
3287
3288 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3284.852 kb on + strand, within HP15_3132 at 3284.916 kb on - strand, within HP15_3132 at 3285.032 kb on + strand, within HP15_3132 at 3285.039 kb on - strand, within HP15_3132 at 3285.153 kb on - strand, within HP15_3132 at 3285.153 kb on - strand, within HP15_3132 at 3285.153 kb on - strand, within HP15_3132 at 3285.166 kb on + strand, within HP15_3132 at 3285.217 kb on - strand, within HP15_3132 at 3285.222 kb on - strand, within HP15_3132 at 3285.245 kb on + strand, within HP15_3132 at 3285.266 kb on + strand at 3285.279 kb on - strand at 3285.279 kb on - strand at 3285.322 kb on - strand at 3285.333 kb on - strand at 3285.471 kb on + strand at 3285.503 kb on + strand, within HP15_3133 at 3285.511 kb on - strand, within HP15_3133 at 3285.521 kb on - strand, within HP15_3133 at 3285.585 kb on + strand, within HP15_3133 at 3285.593 kb on - strand, within HP15_3133 at 3285.700 kb on - strand, within HP15_3133 at 3285.746 kb on - strand at 3285.754 kb on - strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.776 kb on + strand at 3285.784 kb on - strand at 3285.784 kb on - strand at 3285.784 kb on - strand at 3285.784 kb on - strand at 3285.784 kb on - strand at 3285.794 kb on + strand at 3285.837 kb on + strand at 3285.837 kb on + strand at 3285.874 kb on - strand at 3285.927 kb on + strand at 3285.927 kb on + strand at 3285.995 kb on - strand at 3286.054 kb on + strand, within HP15_3134 at 3286.054 kb on + strand, within HP15_3134 at 3286.054 kb on + strand, within HP15_3134 at 3286.125 kb on + strand, within HP15_3134 at 3286.133 kb on - strand, within HP15_3134 at 3286.251 kb on + strand, within HP15_3134 at 3286.254 kb on - strand, within HP15_3134 at 3286.261 kb on + strand, within HP15_3134 at 3286.442 kb on + strand, within HP15_3134 at 3286.564 kb on - strand, within HP15_3134 at 3286.580 kb on + strand, within HP15_3134 at 3286.586 kb on - strand, within HP15_3134 at 3286.594 kb on + strand, within HP15_3134 at 3286.599 kb on + strand, within HP15_3134 at 3286.602 kb on - strand, within HP15_3134 at 3286.604 kb on + strand, within HP15_3134 at 3286.685 kb on + strand, within HP15_3134 at 3286.690 kb on + strand, within HP15_3134 at 3286.693 kb on - strand, within HP15_3134 at 3286.797 kb on - strand, within HP15_3134 at 3286.815 kb on - strand, within HP15_3134 at 3286.846 kb on + strand, within HP15_3134 at 3286.846 kb on + strand, within HP15_3134 at 3286.854 kb on - strand, within HP15_3134 at 3286.854 kb on - strand, within HP15_3134 at 3286.885 kb on - strand, within HP15_3134 at 3286.894 kb on - strand, within HP15_3134 at 3286.896 kb on + strand, within HP15_3134 at 3286.896 kb on + strand, within HP15_3134 at 3286.896 kb on + strand, within HP15_3134 at 3286.904 kb on - strand, within HP15_3134 at 3286.904 kb on - strand, within HP15_3134 at 3286.904 kb on - strand, within HP15_3134 at 3286.904 kb on - strand, within HP15_3134 at 3286.918 kb on + strand, within HP15_3134 at 3286.995 kb on + strand, within HP15_3134 at 3287.003 kb on - strand, within HP15_3134 at 3287.027 kb on - strand, within HP15_3134 at 3287.061 kb on + strand, within HP15_3134 at 3287.061 kb on + strand, within HP15_3134 at 3287.061 kb on + strand, within HP15_3134 at 3287.069 kb on - strand, within HP15_3134 at 3287.069 kb on - strand, within HP15_3134 at 3287.069 kb on - strand, within HP15_3134 at 3287.120 kb on - strand, within HP15_3134 at 3287.120 kb on - strand, within HP15_3134 at 3287.331 kb on + strand, within HP15_3134 at 3287.339 kb on - strand, within HP15_3134 at 3287.339 kb on - strand, within HP15_3134 at 3287.344 kb on - strand, within HP15_3134 at 3287.406 kb on + strand, within HP15_3134 at 3287.411 kb on + strand, within HP15_3134 at 3287.487 kb on - strand at 3287.492 kb on + strand at 3287.500 kb on - strand at 3287.560 kb on - strand at 3287.682 kb on - strand at 3287.724 kb on + strand, within HP15_3135 at 3287.845 kb on - strand, within HP15_3135 at 3287.845 kb on - strand, within HP15_3135 at 3287.862 kb on + strand, within HP15_3135 at 3287.882 kb on - strand, within HP15_3135 at 3287.892 kb on - strand, within HP15_3135 at 3287.939 kb on + strand, within HP15_3135 at 3287.939 kb on + strand, within HP15_3135 at 3287.939 kb on + strand, within HP15_3135 at 3287.984 kb on - strand, within HP15_3135 at 3288.168 kb on - strand, within HP15_3135 at 3288.204 kb on - strand, within HP15_3135 at 3288.354 kb on - strand, within HP15_3135 at 3288.425 kb on + strand, within HP15_3135 at 3288.425 kb on + strand, within HP15_3135 at 3288.425 kb on + strand, within HP15_3135 at 3288.433 kb on - strand, within HP15_3135 at 3288.433 kb on - strand, within HP15_3135 at 3288.433 kb on - strand, within HP15_3135 at 3288.519 kb on - strand, within HP15_3135 at 3288.536 kb on + strand, within HP15_3135 at 3288.536 kb on + strand, within HP15_3135 at 3288.541 kb on - strand, within HP15_3135
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,284,852 + HP15_3132 0.61 -0.5 3,284,916 - HP15_3132 0.65 +0.4 3,285,032 + HP15_3132 0.74 -0.0 3,285,039 - HP15_3132 0.74 +1.0 3,285,153 - HP15_3132 0.83 +0.1 3,285,153 - HP15_3132 0.83 -0.2 3,285,153 - HP15_3132 0.83 -0.2 3,285,166 + HP15_3132 0.84 +0.2 3,285,217 - HP15_3132 0.87 -0.1 3,285,222 - HP15_3132 0.88 +1.9 3,285,245 + HP15_3132 0.89 +0.1 3,285,266 + -0.1 3,285,279 - -2.1 3,285,279 - -0.9 3,285,322 - +0.2 3,285,333 - -0.2 3,285,471 + -0.5 3,285,503 + HP15_3133 0.15 -0.3 3,285,511 - HP15_3133 0.18 +0.3 3,285,521 - HP15_3133 0.21 +1.9 3,285,585 + HP15_3133 0.44 -0.3 3,285,593 - HP15_3133 0.47 +0.9 3,285,700 - HP15_3133 0.84 -0.1 3,285,746 - -0.8 3,285,754 - +2.9 3,285,776 + -1.0 3,285,776 + +0.4 3,285,776 + -0.7 3,285,776 + -0.7 3,285,776 + +0.1 3,285,776 + -1.7 3,285,776 + -0.4 3,285,784 - +0.0 3,285,784 - +0.5 3,285,784 - -0.1 3,285,784 - -1.3 3,285,784 - -0.1 3,285,794 + +0.6 3,285,837 + +0.1 3,285,837 + +1.1 3,285,874 - +3.5 3,285,927 + -2.1 3,285,927 + -1.1 3,285,995 - -1.9 3,286,054 + HP15_3134 0.13 -0.9 3,286,054 + HP15_3134 0.13 -1.4 3,286,054 + HP15_3134 0.13 -0.5 3,286,125 + HP15_3134 0.17 -1.4 3,286,133 - HP15_3134 0.17 -1.7 3,286,251 + HP15_3134 0.24 -0.8 3,286,254 - HP15_3134 0.24 -0.5 3,286,261 + HP15_3134 0.24 -1.9 3,286,442 + HP15_3134 0.35 -1.5 3,286,564 - HP15_3134 0.42 +0.0 3,286,580 + HP15_3134 0.43 -0.4 3,286,586 - HP15_3134 0.43 +0.3 3,286,594 + HP15_3134 0.43 -0.9 3,286,599 + HP15_3134 0.44 -0.5 3,286,602 - HP15_3134 0.44 +2.3 3,286,604 + HP15_3134 0.44 -1.5 3,286,685 + HP15_3134 0.48 -0.9 3,286,690 + HP15_3134 0.49 -1.7 3,286,693 - HP15_3134 0.49 -0.3 3,286,797 - HP15_3134 0.55 -0.1 3,286,815 - HP15_3134 0.56 -0.2 3,286,846 + HP15_3134 0.58 -1.7 3,286,846 + HP15_3134 0.58 -2.0 3,286,854 - HP15_3134 0.58 -0.7 3,286,854 - HP15_3134 0.58 -0.7 3,286,885 - HP15_3134 0.60 -0.4 3,286,894 - HP15_3134 0.60 -0.2 3,286,896 + HP15_3134 0.60 -1.1 3,286,896 + HP15_3134 0.60 +0.0 3,286,896 + HP15_3134 0.60 -0.2 3,286,904 - HP15_3134 0.61 -0.8 3,286,904 - HP15_3134 0.61 -0.9 3,286,904 - HP15_3134 0.61 -0.6 3,286,904 - HP15_3134 0.61 -0.3 3,286,918 + HP15_3134 0.62 -1.0 3,286,995 + HP15_3134 0.66 -1.0 3,287,003 - HP15_3134 0.66 -1.0 3,287,027 - HP15_3134 0.68 +0.1 3,287,061 + HP15_3134 0.70 -2.1 3,287,061 + HP15_3134 0.70 +0.3 3,287,061 + HP15_3134 0.70 -0.5 3,287,069 - HP15_3134 0.70 +1.5 3,287,069 - HP15_3134 0.70 -0.2 3,287,069 - HP15_3134 0.70 -1.0 3,287,120 - HP15_3134 0.73 -0.5 3,287,120 - HP15_3134 0.73 -2.1 3,287,331 + HP15_3134 0.85 -0.7 3,287,339 - HP15_3134 0.85 -1.6 3,287,339 - HP15_3134 0.85 -2.5 3,287,344 - HP15_3134 0.86 -0.0 3,287,406 + HP15_3134 0.89 -1.5 3,287,411 + HP15_3134 0.90 -0.9 3,287,487 - -0.8 3,287,492 + -1.5 3,287,500 - -0.1 3,287,560 - -1.9 3,287,682 - -0.9 3,287,724 + HP15_3135 0.12 -0.9 3,287,845 - HP15_3135 0.23 -0.1 3,287,845 - HP15_3135 0.23 -1.5 3,287,862 + HP15_3135 0.24 +0.5 3,287,882 - HP15_3135 0.26 -1.1 3,287,892 - HP15_3135 0.27 -1.2 3,287,939 + HP15_3135 0.31 +0.5 3,287,939 + HP15_3135 0.31 -0.7 3,287,939 + HP15_3135 0.31 -0.1 3,287,984 - HP15_3135 0.35 -0.1 3,288,168 - HP15_3135 0.51 -0.5 3,288,204 - HP15_3135 0.54 -1.7 3,288,354 - HP15_3135 0.67 +0.0 3,288,425 + HP15_3135 0.73 -0.4 3,288,425 + HP15_3135 0.73 -0.7 3,288,425 + HP15_3135 0.73 -1.1 3,288,433 - HP15_3135 0.73 -1.7 3,288,433 - HP15_3135 0.73 -0.9 3,288,433 - HP15_3135 0.73 +0.2 3,288,519 - HP15_3135 0.81 -1.1 3,288,536 + HP15_3135 0.82 -1.0 3,288,536 + HP15_3135 0.82 -0.1 3,288,541 - HP15_3135 0.83 -1.1
Or see this region's nucleotide sequence