Strain Fitness in Marinobacter adhaerens HP15 around HP15_3134

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3132 and HP15_3133 are separated by 67 nucleotidesHP15_3133 and HP15_3134 are separated by 84 nucleotidesHP15_3134 and HP15_3135 overlap by 17 nucleotides HP15_3132: HP15_3132 - fumarate hydratase class II, at 3,284,016 to 3,285,392 _3132 HP15_3133: HP15_3133 - conserved hypothetical protein, at 3,285,460 to 3,285,744 _3133 HP15_3134: HP15_3134 - two-component system sensor protein, at 3,285,829 to 3,287,595 _3134 HP15_3135: HP15_3135 - ethanol oxidation regulatory protein ercA (from data), at 3,287,579 to 3,288,742 _3135 Position (kb) 3285 3286 3287 3288Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3284.852 kb on + strand, within HP15_3132at 3284.916 kb on - strand, within HP15_3132at 3285.032 kb on + strand, within HP15_3132at 3285.039 kb on - strand, within HP15_3132at 3285.153 kb on - strand, within HP15_3132at 3285.153 kb on - strand, within HP15_3132at 3285.153 kb on - strand, within HP15_3132at 3285.166 kb on + strand, within HP15_3132at 3285.217 kb on - strand, within HP15_3132at 3285.222 kb on - strand, within HP15_3132at 3285.245 kb on + strand, within HP15_3132at 3285.266 kb on + strandat 3285.279 kb on - strandat 3285.279 kb on - strandat 3285.322 kb on - strandat 3285.333 kb on - strandat 3285.471 kb on + strandat 3285.503 kb on + strand, within HP15_3133at 3285.511 kb on - strand, within HP15_3133at 3285.521 kb on - strand, within HP15_3133at 3285.585 kb on + strand, within HP15_3133at 3285.593 kb on - strand, within HP15_3133at 3285.700 kb on - strand, within HP15_3133at 3285.746 kb on - strandat 3285.754 kb on - strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.776 kb on + strandat 3285.784 kb on - strandat 3285.784 kb on - strandat 3285.784 kb on - strandat 3285.784 kb on - strandat 3285.784 kb on - strandat 3285.794 kb on + strandat 3285.837 kb on + strandat 3285.837 kb on + strandat 3285.874 kb on - strandat 3285.927 kb on + strandat 3285.927 kb on + strandat 3285.995 kb on - strandat 3286.054 kb on + strand, within HP15_3134at 3286.054 kb on + strand, within HP15_3134at 3286.054 kb on + strand, within HP15_3134at 3286.125 kb on + strand, within HP15_3134at 3286.133 kb on - strand, within HP15_3134at 3286.251 kb on + strand, within HP15_3134at 3286.254 kb on - strand, within HP15_3134at 3286.261 kb on + strand, within HP15_3134at 3286.442 kb on + strand, within HP15_3134at 3286.564 kb on - strand, within HP15_3134at 3286.580 kb on + strand, within HP15_3134at 3286.586 kb on - strand, within HP15_3134at 3286.594 kb on + strand, within HP15_3134at 3286.599 kb on + strand, within HP15_3134at 3286.602 kb on - strand, within HP15_3134at 3286.604 kb on + strand, within HP15_3134at 3286.685 kb on + strand, within HP15_3134at 3286.690 kb on + strand, within HP15_3134at 3286.693 kb on - strand, within HP15_3134at 3286.797 kb on - strand, within HP15_3134at 3286.815 kb on - strand, within HP15_3134at 3286.846 kb on + strand, within HP15_3134at 3286.846 kb on + strand, within HP15_3134at 3286.854 kb on - strand, within HP15_3134at 3286.854 kb on - strand, within HP15_3134at 3286.885 kb on - strand, within HP15_3134at 3286.894 kb on - strand, within HP15_3134at 3286.896 kb on + strand, within HP15_3134at 3286.896 kb on + strand, within HP15_3134at 3286.896 kb on + strand, within HP15_3134at 3286.904 kb on - strand, within HP15_3134at 3286.904 kb on - strand, within HP15_3134at 3286.904 kb on - strand, within HP15_3134at 3286.904 kb on - strand, within HP15_3134at 3286.918 kb on + strand, within HP15_3134at 3286.995 kb on + strand, within HP15_3134at 3287.003 kb on - strand, within HP15_3134at 3287.027 kb on - strand, within HP15_3134at 3287.061 kb on + strand, within HP15_3134at 3287.061 kb on + strand, within HP15_3134at 3287.061 kb on + strand, within HP15_3134at 3287.069 kb on - strand, within HP15_3134at 3287.069 kb on - strand, within HP15_3134at 3287.069 kb on - strand, within HP15_3134at 3287.120 kb on - strand, within HP15_3134at 3287.120 kb on - strand, within HP15_3134at 3287.331 kb on + strand, within HP15_3134at 3287.339 kb on - strand, within HP15_3134at 3287.339 kb on - strand, within HP15_3134at 3287.344 kb on - strand, within HP15_3134at 3287.406 kb on + strand, within HP15_3134at 3287.411 kb on + strand, within HP15_3134at 3287.487 kb on - strandat 3287.492 kb on + strandat 3287.500 kb on - strandat 3287.560 kb on - strandat 3287.682 kb on - strandat 3287.724 kb on + strand, within HP15_3135at 3287.845 kb on - strand, within HP15_3135at 3287.845 kb on - strand, within HP15_3135at 3287.862 kb on + strand, within HP15_3135at 3287.882 kb on - strand, within HP15_3135at 3287.892 kb on - strand, within HP15_3135at 3287.939 kb on + strand, within HP15_3135at 3287.939 kb on + strand, within HP15_3135at 3287.939 kb on + strand, within HP15_3135at 3287.984 kb on - strand, within HP15_3135at 3288.168 kb on - strand, within HP15_3135at 3288.204 kb on - strand, within HP15_3135at 3288.354 kb on - strand, within HP15_3135at 3288.425 kb on + strand, within HP15_3135at 3288.425 kb on + strand, within HP15_3135at 3288.425 kb on + strand, within HP15_3135at 3288.433 kb on - strand, within HP15_3135at 3288.433 kb on - strand, within HP15_3135at 3288.433 kb on - strand, within HP15_3135at 3288.519 kb on - strand, within HP15_3135at 3288.536 kb on + strand, within HP15_3135at 3288.536 kb on + strand, within HP15_3135at 3288.541 kb on - strand, within HP15_3135

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,284,852 + HP15_3132 0.61 -0.5
3,284,916 - HP15_3132 0.65 +0.4
3,285,032 + HP15_3132 0.74 -0.0
3,285,039 - HP15_3132 0.74 +1.0
3,285,153 - HP15_3132 0.83 +0.1
3,285,153 - HP15_3132 0.83 -0.2
3,285,153 - HP15_3132 0.83 -0.2
3,285,166 + HP15_3132 0.84 +0.2
3,285,217 - HP15_3132 0.87 -0.1
3,285,222 - HP15_3132 0.88 +1.9
3,285,245 + HP15_3132 0.89 +0.1
3,285,266 + -0.1
3,285,279 - -2.1
3,285,279 - -0.9
3,285,322 - +0.2
3,285,333 - -0.2
3,285,471 + -0.5
3,285,503 + HP15_3133 0.15 -0.3
3,285,511 - HP15_3133 0.18 +0.3
3,285,521 - HP15_3133 0.21 +1.9
3,285,585 + HP15_3133 0.44 -0.3
3,285,593 - HP15_3133 0.47 +0.9
3,285,700 - HP15_3133 0.84 -0.1
3,285,746 - -0.8
3,285,754 - +2.9
3,285,776 + -1.0
3,285,776 + +0.4
3,285,776 + -0.7
3,285,776 + -0.7
3,285,776 + +0.1
3,285,776 + -1.7
3,285,776 + -0.4
3,285,784 - +0.0
3,285,784 - +0.5
3,285,784 - -0.1
3,285,784 - -1.3
3,285,784 - -0.1
3,285,794 + +0.6
3,285,837 + +0.1
3,285,837 + +1.1
3,285,874 - +3.5
3,285,927 + -2.1
3,285,927 + -1.1
3,285,995 - -1.9
3,286,054 + HP15_3134 0.13 -0.9
3,286,054 + HP15_3134 0.13 -1.4
3,286,054 + HP15_3134 0.13 -0.5
3,286,125 + HP15_3134 0.17 -1.4
3,286,133 - HP15_3134 0.17 -1.7
3,286,251 + HP15_3134 0.24 -0.8
3,286,254 - HP15_3134 0.24 -0.5
3,286,261 + HP15_3134 0.24 -1.9
3,286,442 + HP15_3134 0.35 -1.5
3,286,564 - HP15_3134 0.42 +0.0
3,286,580 + HP15_3134 0.43 -0.4
3,286,586 - HP15_3134 0.43 +0.3
3,286,594 + HP15_3134 0.43 -0.9
3,286,599 + HP15_3134 0.44 -0.5
3,286,602 - HP15_3134 0.44 +2.3
3,286,604 + HP15_3134 0.44 -1.5
3,286,685 + HP15_3134 0.48 -0.9
3,286,690 + HP15_3134 0.49 -1.7
3,286,693 - HP15_3134 0.49 -0.3
3,286,797 - HP15_3134 0.55 -0.1
3,286,815 - HP15_3134 0.56 -0.2
3,286,846 + HP15_3134 0.58 -1.7
3,286,846 + HP15_3134 0.58 -2.0
3,286,854 - HP15_3134 0.58 -0.7
3,286,854 - HP15_3134 0.58 -0.7
3,286,885 - HP15_3134 0.60 -0.4
3,286,894 - HP15_3134 0.60 -0.2
3,286,896 + HP15_3134 0.60 -1.1
3,286,896 + HP15_3134 0.60 +0.0
3,286,896 + HP15_3134 0.60 -0.2
3,286,904 - HP15_3134 0.61 -0.8
3,286,904 - HP15_3134 0.61 -0.9
3,286,904 - HP15_3134 0.61 -0.6
3,286,904 - HP15_3134 0.61 -0.3
3,286,918 + HP15_3134 0.62 -1.0
3,286,995 + HP15_3134 0.66 -1.0
3,287,003 - HP15_3134 0.66 -1.0
3,287,027 - HP15_3134 0.68 +0.1
3,287,061 + HP15_3134 0.70 -2.1
3,287,061 + HP15_3134 0.70 +0.3
3,287,061 + HP15_3134 0.70 -0.5
3,287,069 - HP15_3134 0.70 +1.5
3,287,069 - HP15_3134 0.70 -0.2
3,287,069 - HP15_3134 0.70 -1.0
3,287,120 - HP15_3134 0.73 -0.5
3,287,120 - HP15_3134 0.73 -2.1
3,287,331 + HP15_3134 0.85 -0.7
3,287,339 - HP15_3134 0.85 -1.6
3,287,339 - HP15_3134 0.85 -2.5
3,287,344 - HP15_3134 0.86 -0.0
3,287,406 + HP15_3134 0.89 -1.5
3,287,411 + HP15_3134 0.90 -0.9
3,287,487 - -0.8
3,287,492 + -1.5
3,287,500 - -0.1
3,287,560 - -1.9
3,287,682 - -0.9
3,287,724 + HP15_3135 0.12 -0.9
3,287,845 - HP15_3135 0.23 -0.1
3,287,845 - HP15_3135 0.23 -1.5
3,287,862 + HP15_3135 0.24 +0.5
3,287,882 - HP15_3135 0.26 -1.1
3,287,892 - HP15_3135 0.27 -1.2
3,287,939 + HP15_3135 0.31 +0.5
3,287,939 + HP15_3135 0.31 -0.7
3,287,939 + HP15_3135 0.31 -0.1
3,287,984 - HP15_3135 0.35 -0.1
3,288,168 - HP15_3135 0.51 -0.5
3,288,204 - HP15_3135 0.54 -1.7
3,288,354 - HP15_3135 0.67 +0.0
3,288,425 + HP15_3135 0.73 -0.4
3,288,425 + HP15_3135 0.73 -0.7
3,288,425 + HP15_3135 0.73 -1.1
3,288,433 - HP15_3135 0.73 -1.7
3,288,433 - HP15_3135 0.73 -0.9
3,288,433 - HP15_3135 0.73 +0.2
3,288,519 - HP15_3135 0.81 -1.1
3,288,536 + HP15_3135 0.82 -1.0
3,288,536 + HP15_3135 0.82 -0.1
3,288,541 - HP15_3135 0.83 -1.1

Or see this region's nucleotide sequence