Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3081 and HP15_3082 are separated by 92 nucleotides HP15_3082 and HP15_3083 are separated by 44 nucleotides HP15_3083 and HP15_3084 are separated by 79 nucleotides HP15_3084 and HP15_3085 are separated by 104 nucleotides HP15_3085 and HP15_3086 are separated by 122 nucleotides HP15_3086 and HP15_3087 overlap by 7 nucleotides
HP15_3081: HP15_3081 - chaperone protein DnaK, at 3,236,946 to 3,238,871
_3081
HP15_3082: HP15_3082 - GrpE nucleotide exchange factor, at 3,238,964 to 3,239,563
_3082
HP15_3083: HP15_3083 - hypothetical protein, at 3,239,608 to 3,239,739
_3083
HP15_3084: HP15_3084 - DNA repair protein RecN, at 3,239,819 to 3,241,498
_3084
HP15_3085: HP15_3085 - ferric-uptake regulator, at 3,241,603 to 3,242,013
_3085
HP15_3086: HP15_3086 - outer membrane lipoprotein OmlA, at 3,242,136 to 3,242,462
_3086
HP15_3087: HP15_3087 - protein belonging to uncharacterized protein family UPF0125, at 3,242,456 to 3,242,746
_3087
Position (kb)
3239
3240
3241
3242 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3239.019 kb on - strand at 3239.604 kb on - strand at 3239.663 kb on - strand, within HP15_3083 at 3239.677 kb on + strand, within HP15_3083 at 3239.680 kb on - strand, within HP15_3083 at 3239.885 kb on + strand at 3239.940 kb on + strand at 3239.999 kb on - strand, within HP15_3084 at 3240.093 kb on - strand, within HP15_3084 at 3240.151 kb on - strand, within HP15_3084 at 3240.151 kb on - strand, within HP15_3084 at 3240.181 kb on - strand, within HP15_3084 at 3240.187 kb on + strand, within HP15_3084 at 3240.365 kb on + strand, within HP15_3084 at 3240.514 kb on + strand, within HP15_3084 at 3240.517 kb on - strand, within HP15_3084 at 3240.522 kb on - strand, within HP15_3084 at 3240.522 kb on - strand, within HP15_3084 at 3240.527 kb on + strand, within HP15_3084 at 3240.535 kb on - strand, within HP15_3084 at 3240.535 kb on - strand, within HP15_3084 at 3240.604 kb on + strand, within HP15_3084 at 3240.612 kb on - strand, within HP15_3084 at 3240.646 kb on - strand, within HP15_3084 at 3240.657 kb on + strand, within HP15_3084 at 3240.693 kb on - strand, within HP15_3084 at 3240.703 kb on - strand, within HP15_3084 at 3240.735 kb on - strand, within HP15_3084 at 3240.838 kb on - strand, within HP15_3084 at 3240.840 kb on + strand, within HP15_3084 at 3240.840 kb on + strand, within HP15_3084 at 3240.840 kb on + strand, within HP15_3084 at 3240.954 kb on + strand, within HP15_3084 at 3240.989 kb on - strand, within HP15_3084 at 3241.001 kb on + strand, within HP15_3084 at 3241.041 kb on + strand, within HP15_3084 at 3241.049 kb on - strand, within HP15_3084 at 3241.082 kb on - strand, within HP15_3084 at 3241.107 kb on - strand, within HP15_3084 at 3241.174 kb on - strand, within HP15_3084 at 3241.180 kb on - strand, within HP15_3084 at 3241.184 kb on - strand, within HP15_3084 at 3241.189 kb on - strand, within HP15_3084 at 3241.324 kb on - strand, within HP15_3084 at 3241.338 kb on + strand at 3241.429 kb on + strand at 3241.459 kb on - strand at 3241.487 kb on + strand at 3241.495 kb on - strand at 3241.495 kb on - strand at 3241.514 kb on + strand at 3241.547 kb on - strand at 3241.598 kb on - strand at 3242.409 kb on + strand, within HP15_3086 at 3242.456 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,239,019 - -1.1 3,239,604 - +0.7 3,239,663 - HP15_3083 0.42 -0.1 3,239,677 + HP15_3083 0.52 +0.1 3,239,680 - HP15_3083 0.55 -0.1 3,239,885 + -4.7 3,239,940 + -3.8 3,239,999 - HP15_3084 0.11 -1.7 3,240,093 - HP15_3084 0.16 -3.6 3,240,151 - HP15_3084 0.20 -4.6 3,240,151 - HP15_3084 0.20 -3.1 3,240,181 - HP15_3084 0.22 -5.9 3,240,187 + HP15_3084 0.22 -5.1 3,240,365 + HP15_3084 0.33 -3.0 3,240,514 + HP15_3084 0.41 -2.4 3,240,517 - HP15_3084 0.42 -1.1 3,240,522 - HP15_3084 0.42 -4.4 3,240,522 - HP15_3084 0.42 -4.5 3,240,527 + HP15_3084 0.42 -4.1 3,240,535 - HP15_3084 0.43 -3.1 3,240,535 - HP15_3084 0.43 -2.2 3,240,604 + HP15_3084 0.47 -4.0 3,240,612 - HP15_3084 0.47 -1.1 3,240,646 - HP15_3084 0.49 -5.0 3,240,657 + HP15_3084 0.50 -3.7 3,240,693 - HP15_3084 0.52 -3.9 3,240,703 - HP15_3084 0.53 -2.1 3,240,735 - HP15_3084 0.55 -3.4 3,240,838 - HP15_3084 0.61 -4.2 3,240,840 + HP15_3084 0.61 -1.1 3,240,840 + HP15_3084 0.61 -1.7 3,240,840 + HP15_3084 0.61 -3.0 3,240,954 + HP15_3084 0.68 -3.9 3,240,989 - HP15_3084 0.70 -5.7 3,241,001 + HP15_3084 0.70 -3.8 3,241,041 + HP15_3084 0.73 -4.4 3,241,049 - HP15_3084 0.73 -2.7 3,241,082 - HP15_3084 0.75 -3.7 3,241,107 - HP15_3084 0.77 -6.0 3,241,174 - HP15_3084 0.81 -3.1 3,241,180 - HP15_3084 0.81 -1.1 3,241,184 - HP15_3084 0.81 -4.0 3,241,189 - HP15_3084 0.82 -4.9 3,241,324 - HP15_3084 0.90 -2.1 3,241,338 + -3.6 3,241,429 + -4.6 3,241,459 - -3.2 3,241,487 + -2.8 3,241,495 - -3.7 3,241,495 - -3.3 3,241,514 + -2.1 3,241,547 - -1.7 3,241,598 - +0.3 3,242,409 + HP15_3086 0.83 -0.4 3,242,456 + +0.1
Or see this region's nucleotide sequence