Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3052 and HP15_3053 are separated by 28 nucleotides HP15_3053 and HP15_3054 are separated by 156 nucleotides
HP15_3052: HP15_3052 - ATP-dependent protease La-like protein, at 3,201,551 to 3,204,016
_3052
HP15_3053: HP15_3053 - transcriptional regulator, MarR family protein, at 3,204,045 to 3,204,539
_3053
HP15_3054: HP15_3054 - TPR repeat containing protein, at 3,204,696 to 3,205,613
_3054
Position (kb)
3204
3205 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3203.045 kb on - strand, within HP15_3052 at 3203.376 kb on + strand, within HP15_3052 at 3203.413 kb on + strand, within HP15_3052 at 3203.462 kb on + strand, within HP15_3052 at 3203.470 kb on - strand, within HP15_3052 at 3203.475 kb on - strand, within HP15_3052 at 3203.475 kb on - strand, within HP15_3052 at 3203.482 kb on + strand, within HP15_3052 at 3203.500 kb on - strand, within HP15_3052 at 3203.543 kb on - strand, within HP15_3052 at 3203.565 kb on - strand, within HP15_3052 at 3203.588 kb on + strand, within HP15_3052 at 3203.628 kb on - strand, within HP15_3052 at 3203.679 kb on + strand, within HP15_3052 at 3203.753 kb on + strand, within HP15_3052 at 3203.950 kb on + strand at 3204.179 kb on + strand, within HP15_3053 at 3204.229 kb on + strand, within HP15_3053 at 3204.357 kb on - strand, within HP15_3053 at 3204.359 kb on + strand, within HP15_3053 at 3204.359 kb on + strand, within HP15_3053 at 3204.364 kb on + strand, within HP15_3053 at 3204.426 kb on + strand, within HP15_3053 at 3204.512 kb on - strand at 3204.513 kb on + strand at 3204.652 kb on + strand at 3204.654 kb on + strand at 3204.660 kb on - strand at 3204.684 kb on - strand at 3204.686 kb on + strand at 3204.842 kb on + strand, within HP15_3054 at 3204.860 kb on + strand, within HP15_3054 at 3204.913 kb on + strand, within HP15_3054 at 3205.128 kb on - strand, within HP15_3054 at 3205.257 kb on - strand, within HP15_3054 at 3205.257 kb on - strand, within HP15_3054 at 3205.285 kb on + strand, within HP15_3054 at 3205.305 kb on - strand, within HP15_3054 at 3205.366 kb on - strand, within HP15_3054 at 3205.429 kb on - strand, within HP15_3054
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,203,045 - HP15_3052 0.61 -0.6 3,203,376 + HP15_3052 0.74 -0.3 3,203,413 + HP15_3052 0.76 -1.0 3,203,462 + HP15_3052 0.77 -0.6 3,203,470 - HP15_3052 0.78 -0.6 3,203,475 - HP15_3052 0.78 +0.0 3,203,475 - HP15_3052 0.78 -0.5 3,203,482 + HP15_3052 0.78 +0.7 3,203,500 - HP15_3052 0.79 +0.0 3,203,543 - HP15_3052 0.81 -0.4 3,203,565 - HP15_3052 0.82 +0.3 3,203,588 + HP15_3052 0.83 +1.9 3,203,628 - HP15_3052 0.84 +1.5 3,203,679 + HP15_3052 0.86 +0.4 3,203,753 + HP15_3052 0.89 +0.8 3,203,950 + +0.5 3,204,179 + HP15_3053 0.27 -5.2 3,204,229 + HP15_3053 0.37 -4.5 3,204,357 - HP15_3053 0.63 -2.4 3,204,359 + HP15_3053 0.63 -5.3 3,204,359 + HP15_3053 0.63 -2.6 3,204,364 + HP15_3053 0.64 -2.3 3,204,426 + HP15_3053 0.77 -3.6 3,204,512 - -3.7 3,204,513 + -2.7 3,204,652 + -0.8 3,204,654 + -0.1 3,204,660 - +1.0 3,204,684 - +0.3 3,204,686 + -0.6 3,204,842 + HP15_3054 0.16 -0.9 3,204,860 + HP15_3054 0.18 -1.5 3,204,913 + HP15_3054 0.24 +0.6 3,205,128 - HP15_3054 0.47 +0.4 3,205,257 - HP15_3054 0.61 -0.6 3,205,257 - HP15_3054 0.61 +0.4 3,205,285 + HP15_3054 0.64 -0.5 3,205,305 - HP15_3054 0.66 +0.9 3,205,366 - HP15_3054 0.73 +0.9 3,205,429 - HP15_3054 0.80 +0.1
Or see this region's nucleotide sequence