Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3019 and HP15_3020 are separated by 3 nucleotides HP15_3020 and HP15_3021 are separated by 12 nucleotides HP15_3021 and HP15_3022 are separated by 128 nucleotides
HP15_3019: HP15_3019 - Na+/Ca+ antiporter, CaCA family, at 3,163,652 to 3,164,623
_3019
HP15_3020: HP15_3020 - lysine exporter protein (LYSE/YGGA), at 3,164,627 to 3,165,247
_3020
HP15_3021: HP15_3021 - glycolate oxidase iron-sulfur subunit, at 3,165,260 to 3,165,691
_3021
HP15_3022: HP15_3022 - protein of unknown function cysteine-rich region domain protein, at 3,165,820 to 3,167,028
_3022
Position (kb)
3164
3165
3166 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3163.713 kb on - strand at 3163.805 kb on - strand, within HP15_3019 at 3163.835 kb on - strand, within HP15_3019 at 3163.865 kb on + strand, within HP15_3019 at 3163.878 kb on - strand, within HP15_3019 at 3163.951 kb on + strand, within HP15_3019 at 3163.998 kb on - strand, within HP15_3019 at 3164.010 kb on + strand, within HP15_3019 at 3164.227 kb on + strand, within HP15_3019 at 3164.246 kb on - strand, within HP15_3019 at 3164.312 kb on + strand, within HP15_3019 at 3164.393 kb on - strand, within HP15_3019 at 3164.403 kb on - strand, within HP15_3019 at 3164.403 kb on - strand, within HP15_3019 at 3164.459 kb on + strand, within HP15_3019 at 3164.474 kb on - strand, within HP15_3019 at 3164.578 kb on - strand at 3164.688 kb on - strand at 3164.696 kb on - strand, within HP15_3020 at 3165.000 kb on - strand, within HP15_3020 at 3165.000 kb on - strand, within HP15_3020 at 3165.059 kb on - strand, within HP15_3020 at 3165.064 kb on + strand, within HP15_3020 at 3165.251 kb on - strand at 3165.294 kb on - strand at 3165.398 kb on + strand, within HP15_3021 at 3165.414 kb on + strand, within HP15_3021 at 3165.422 kb on - strand, within HP15_3021 at 3165.422 kb on - strand, within HP15_3021 at 3165.438 kb on + strand, within HP15_3021 at 3165.659 kb on - strand at 3165.697 kb on + strand at 3165.704 kb on + strand at 3165.712 kb on - strand at 3165.712 kb on - strand at 3165.834 kb on + strand at 3166.076 kb on - strand, within HP15_3022 at 3166.146 kb on - strand, within HP15_3022 at 3166.196 kb on - strand, within HP15_3022
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,163,713 - +0.1 3,163,805 - HP15_3019 0.16 +0.4 3,163,835 - HP15_3019 0.19 +0.5 3,163,865 + HP15_3019 0.22 +0.2 3,163,878 - HP15_3019 0.23 +0.9 3,163,951 + HP15_3019 0.31 +0.1 3,163,998 - HP15_3019 0.36 +1.1 3,164,010 + HP15_3019 0.37 -0.5 3,164,227 + HP15_3019 0.59 -0.2 3,164,246 - HP15_3019 0.61 +0.1 3,164,312 + HP15_3019 0.68 +0.4 3,164,393 - HP15_3019 0.76 +1.6 3,164,403 - HP15_3019 0.77 +1.1 3,164,403 - HP15_3019 0.77 -0.0 3,164,459 + HP15_3019 0.83 +0.4 3,164,474 - HP15_3019 0.85 +1.4 3,164,578 - -0.9 3,164,688 - +1.0 3,164,696 - HP15_3020 0.11 +1.9 3,165,000 - HP15_3020 0.60 +0.4 3,165,000 - HP15_3020 0.60 +0.1 3,165,059 - HP15_3020 0.70 +0.4 3,165,064 + HP15_3020 0.70 +0.7 3,165,251 - -0.1 3,165,294 - +1.5 3,165,398 + HP15_3021 0.32 +0.9 3,165,414 + HP15_3021 0.36 -0.4 3,165,422 - HP15_3021 0.38 +2.0 3,165,422 - HP15_3021 0.38 +0.9 3,165,438 + HP15_3021 0.41 +0.6 3,165,659 - +0.3 3,165,697 + -0.7 3,165,704 + +0.5 3,165,712 - -0.1 3,165,712 - -0.4 3,165,834 + +3.2 3,166,076 - HP15_3022 0.21 -1.1 3,166,146 - HP15_3022 0.27 -1.7 3,166,196 - HP15_3022 0.31 -0.7
Or see this region's nucleotide sequence