Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2965 and HP15_2966 overlap by 4 nucleotides HP15_2966 and HP15_2967 are separated by 158 nucleotides HP15_2967 and HP15_2968 are separated by 116 nucleotides
HP15_2965: HP15_2965 - inner membrane protein, at 3,109,850 to 3,110,689
_2965
HP15_2966: HP15_2966 - electron transport protein SCO1/SenC, at 3,110,686 to 3,111,279
_2966
HP15_2967: HP15_2967 - cation efflux family protein, at 3,111,438 to 3,112,268
_2967
HP15_2968: HP15_2968 - deoxyribodipyrimidine photo-lyase, at 3,112,385 to 3,114,001
_2968
Position (kb)
3111
3112
3113 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3110.458 kb on - strand, within HP15_2965 at 3110.521 kb on - strand, within HP15_2965 at 3110.530 kb on + strand, within HP15_2965 at 3110.585 kb on - strand, within HP15_2965 at 3110.777 kb on + strand, within HP15_2966 at 3110.829 kb on - strand, within HP15_2966 at 3110.891 kb on + strand, within HP15_2966 at 3110.899 kb on - strand, within HP15_2966 at 3110.954 kb on - strand, within HP15_2966 at 3110.987 kb on + strand, within HP15_2966 at 3110.987 kb on + strand, within HP15_2966 at 3111.002 kb on + strand, within HP15_2966 at 3111.165 kb on - strand, within HP15_2966 at 3111.227 kb on + strand at 3111.242 kb on + strand at 3111.242 kb on + strand at 3111.247 kb on + strand at 3111.389 kb on - strand at 3111.434 kb on - strand at 3111.468 kb on - strand at 3111.483 kb on - strand at 3111.488 kb on - strand at 3111.517 kb on + strand at 3111.517 kb on + strand at 3111.517 kb on + strand at 3111.517 kb on + strand at 3111.534 kb on + strand, within HP15_2967 at 3111.546 kb on + strand, within HP15_2967 at 3111.546 kb on + strand, within HP15_2967 at 3111.559 kb on - strand, within HP15_2967 at 3111.585 kb on - strand, within HP15_2967 at 3111.599 kb on + strand, within HP15_2967 at 3111.633 kb on + strand, within HP15_2967 at 3111.678 kb on + strand, within HP15_2967 at 3111.777 kb on + strand, within HP15_2967 at 3111.795 kb on + strand, within HP15_2967 at 3111.857 kb on + strand, within HP15_2967 at 3111.909 kb on - strand, within HP15_2967 at 3111.909 kb on - strand, within HP15_2967 at 3111.988 kb on + strand, within HP15_2967 at 3111.996 kb on - strand, within HP15_2967 at 3112.068 kb on - strand, within HP15_2967 at 3112.087 kb on + strand, within HP15_2967 at 3112.105 kb on - strand, within HP15_2967 at 3112.138 kb on - strand, within HP15_2967 at 3112.143 kb on - strand, within HP15_2967 at 3112.143 kb on - strand, within HP15_2967 at 3112.270 kb on - strand at 3112.313 kb on + strand at 3112.473 kb on + strand at 3112.649 kb on - strand, within HP15_2968 at 3112.726 kb on - strand, within HP15_2968 at 3112.849 kb on + strand, within HP15_2968 at 3112.883 kb on + strand, within HP15_2968 at 3112.883 kb on + strand, within HP15_2968 at 3112.891 kb on - strand, within HP15_2968 at 3112.894 kb on + strand, within HP15_2968 at 3112.902 kb on - strand, within HP15_2968 at 3112.960 kb on + strand, within HP15_2968 at 3112.996 kb on - strand, within HP15_2968
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 3,110,458 - HP15_2965 0.72 -1.0 3,110,521 - HP15_2965 0.80 -2.1 3,110,530 + HP15_2965 0.81 +1.9 3,110,585 - HP15_2965 0.88 +0.1 3,110,777 + HP15_2966 0.15 -1.0 3,110,829 - HP15_2966 0.24 +1.0 3,110,891 + HP15_2966 0.35 +1.1 3,110,899 - HP15_2966 0.36 -0.0 3,110,954 - HP15_2966 0.45 +0.1 3,110,987 + HP15_2966 0.51 +0.1 3,110,987 + HP15_2966 0.51 +0.2 3,111,002 + HP15_2966 0.53 +0.8 3,111,165 - HP15_2966 0.81 -0.4 3,111,227 + -1.2 3,111,242 + -0.5 3,111,242 + -0.1 3,111,247 + +0.1 3,111,389 - +0.7 3,111,434 - -2.2 3,111,468 - +1.2 3,111,483 - +0.4 3,111,488 - +0.1 3,111,517 + +1.6 3,111,517 + -0.1 3,111,517 + +0.8 3,111,517 + +2.2 3,111,534 + HP15_2967 0.12 -1.1 3,111,546 + HP15_2967 0.13 -0.7 3,111,546 + HP15_2967 0.13 +0.3 3,111,559 - HP15_2967 0.15 -0.2 3,111,585 - HP15_2967 0.18 +0.2 3,111,599 + HP15_2967 0.19 +0.3 3,111,633 + HP15_2967 0.23 -0.2 3,111,678 + HP15_2967 0.29 -0.2 3,111,777 + HP15_2967 0.41 -0.5 3,111,795 + HP15_2967 0.43 -0.1 3,111,857 + HP15_2967 0.50 -1.2 3,111,909 - HP15_2967 0.57 -0.7 3,111,909 - HP15_2967 0.57 -0.3 3,111,988 + HP15_2967 0.66 +0.6 3,111,996 - HP15_2967 0.67 -1.0 3,112,068 - HP15_2967 0.76 -0.6 3,112,087 + HP15_2967 0.78 -0.1 3,112,105 - HP15_2967 0.80 +0.5 3,112,138 - HP15_2967 0.84 -1.9 3,112,143 - HP15_2967 0.85 -0.5 3,112,143 - HP15_2967 0.85 -0.6 3,112,270 - +0.5 3,112,313 + +1.0 3,112,473 + -0.0 3,112,649 - HP15_2968 0.16 +0.4 3,112,726 - HP15_2968 0.21 -0.6 3,112,849 + HP15_2968 0.29 +0.2 3,112,883 + HP15_2968 0.31 +2.5 3,112,883 + HP15_2968 0.31 -1.2 3,112,891 - HP15_2968 0.31 +0.1 3,112,894 + HP15_2968 0.31 +0.1 3,112,902 - HP15_2968 0.32 +0.1 3,112,960 + HP15_2968 0.36 -0.2 3,112,996 - HP15_2968 0.38 -0.5
Or see this region's nucleotide sequence