Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30610

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c30600 and PGA1_c30610 are separated by 338 nucleotidesPGA1_c30610 and PGA1_c30620 are separated by 155 nucleotides PGA1_c30600: PGA1_c30600 - RTX toxins and related Ca2+-binding proteins, at 3,193,078 to 3,195,957 _c30600 PGA1_c30610: PGA1_c30610 - hypothetical protein, at 3,196,296 to 3,196,508 _c30610 PGA1_c30620: PGA1_c30620 - transposase, at 3,196,664 to 3,198,193 _c30620 Position (kb) 3196 3197Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3195.303 kb on - strand, within PGA1_c30600at 3195.305 kb on + strand, within PGA1_c30600at 3195.305 kb on - strand, within PGA1_c30600at 3195.315 kb on + strand, within PGA1_c30600at 3195.347 kb on - strand, within PGA1_c30600at 3195.388 kb on + strand, within PGA1_c30600at 3195.396 kb on - strand, within PGA1_c30600at 3195.452 kb on - strand, within PGA1_c30600at 3195.506 kb on + strand, within PGA1_c30600at 3195.514 kb on - strand, within PGA1_c30600at 3195.562 kb on + strand, within PGA1_c30600at 3195.568 kb on - strand, within PGA1_c30600at 3195.698 kb on + strandat 3195.708 kb on + strandat 3195.708 kb on + strandat 3195.708 kb on + strandat 3195.716 kb on - strandat 3195.762 kb on + strandat 3195.762 kb on + strandat 3195.773 kb on + strandat 3195.773 kb on + strandat 3195.773 kb on + strandat 3195.775 kb on - strandat 3195.795 kb on + strandat 3195.837 kb on + strandat 3195.839 kb on + strandat 3195.847 kb on + strandat 3195.855 kb on - strandat 3195.855 kb on - strandat 3195.870 kb on - strandat 3195.934 kb on - strandat 3195.960 kb on - strandat 3195.987 kb on + strandat 3195.995 kb on - strandat 3196.028 kb on - strandat 3196.038 kb on - strandat 3196.050 kb on - strandat 3196.078 kb on + strandat 3196.078 kb on + strandat 3196.211 kb on + strandat 3196.219 kb on - strandat 3196.219 kb on - strandat 3196.219 kb on - strandat 3196.280 kb on - strandat 3196.300 kb on - strandat 3196.347 kb on + strand, within PGA1_c30610at 3196.348 kb on - strand, within PGA1_c30610at 3196.350 kb on + strand, within PGA1_c30610at 3196.358 kb on - strand, within PGA1_c30610at 3196.376 kb on + strand, within PGA1_c30610at 3196.384 kb on - strand, within PGA1_c30610at 3196.384 kb on - strand, within PGA1_c30610at 3196.393 kb on - strand, within PGA1_c30610at 3196.396 kb on + strand, within PGA1_c30610at 3196.398 kb on - strand, within PGA1_c30610at 3196.398 kb on - strand, within PGA1_c30610at 3196.404 kb on - strand, within PGA1_c30610at 3196.411 kb on + strand, within PGA1_c30610at 3196.456 kb on + strand, within PGA1_c30610at 3196.466 kb on + strand, within PGA1_c30610at 3196.466 kb on + strand, within PGA1_c30610at 3196.466 kb on + strand, within PGA1_c30610at 3196.473 kb on + strand, within PGA1_c30610at 3196.474 kb on - strand, within PGA1_c30610at 3196.474 kb on - strand, within PGA1_c30610at 3196.474 kb on - strand, within PGA1_c30610at 3196.481 kb on - strand, within PGA1_c30610at 3196.542 kb on + strandat 3196.542 kb on + strandat 3196.570 kb on - strandat 3196.570 kb on - strandat 3196.570 kb on - strandat 3196.575 kb on - strandat 3196.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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3,195,303 - PGA1_c30600 0.77 -2.9
3,195,305 + PGA1_c30600 0.77 -0.4
3,195,305 - PGA1_c30600 0.77 -0.6
3,195,315 + PGA1_c30600 0.78 -1.6
3,195,347 - PGA1_c30600 0.79 -0.6
3,195,388 + PGA1_c30600 0.80 +0.8
3,195,396 - PGA1_c30600 0.80 -0.6
3,195,452 - PGA1_c30600 0.82 +0.5
3,195,506 + PGA1_c30600 0.84 +0.6
3,195,514 - PGA1_c30600 0.85 +0.6
3,195,562 + PGA1_c30600 0.86 +0.2
3,195,568 - PGA1_c30600 0.86 -0.1
3,195,698 + +1.2
3,195,708 + +1.4
3,195,708 + +1.4
3,195,708 + -1.7
3,195,716 - +2.1
3,195,762 + +0.8
3,195,762 + -0.4
3,195,773 + +0.6
3,195,773 + -0.3
3,195,773 + +0.6
3,195,775 - -0.8
3,195,795 + +0.2
3,195,837 + -1.3
3,195,839 + +0.5
3,195,847 + +0.3
3,195,855 - -1.4
3,195,855 - +0.2
3,195,870 - -1.8
3,195,934 - +0.0
3,195,960 - +0.1
3,195,987 + +0.0
3,195,995 - -0.6
3,196,028 - +0.1
3,196,038 - -0.3
3,196,050 - +0.3
3,196,078 + +1.7
3,196,078 + +0.0
3,196,211 + -0.5
3,196,219 - -0.4
3,196,219 - -1.4
3,196,219 - -0.3
3,196,280 - -0.2
3,196,300 - -1.1
3,196,347 + PGA1_c30610 0.24 -0.2
3,196,348 - PGA1_c30610 0.24 -0.0
3,196,350 + PGA1_c30610 0.25 -1.4
3,196,358 - PGA1_c30610 0.29 -0.3
3,196,376 + PGA1_c30610 0.38 -1.0
3,196,384 - PGA1_c30610 0.41 -1.1
3,196,384 - PGA1_c30610 0.41 -0.4
3,196,393 - PGA1_c30610 0.46 -0.0
3,196,396 + PGA1_c30610 0.47 -0.3
3,196,398 - PGA1_c30610 0.48 +1.3
3,196,398 - PGA1_c30610 0.48 -0.4
3,196,404 - PGA1_c30610 0.51 -0.5
3,196,411 + PGA1_c30610 0.54 -0.2
3,196,456 + PGA1_c30610 0.75 +0.8
3,196,466 + PGA1_c30610 0.80 +0.5
3,196,466 + PGA1_c30610 0.80 -1.4
3,196,466 + PGA1_c30610 0.80 +0.8
3,196,473 + PGA1_c30610 0.83 +0.2
3,196,474 - PGA1_c30610 0.84 -2.0
3,196,474 - PGA1_c30610 0.84 -1.5
3,196,474 - PGA1_c30610 0.84 -0.2
3,196,481 - PGA1_c30610 0.87 -1.8
3,196,542 + +0.2
3,196,542 + +0.1
3,196,570 - +0.0
3,196,570 - -0.3
3,196,570 - +0.4
3,196,575 - +0.1
3,196,575 - +0.6

Or see this region's nucleotide sequence