Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c30550 and PGA1_c30560 are separated by 9 nucleotides PGA1_c30560 and PGA1_c30570 are separated by 77 nucleotides PGA1_c30570 and PGA1_c30580 are separated by 100 nucleotides PGA1_c30580 and PGA1_c30590 are separated by 175 nucleotides
PGA1_c30550: PGA1_c30550 - Domain of Unknown Function (DUF1206)., at 3,189,685 to 3,190,587
_c30550
PGA1_c30560: PGA1_c30560 - HTH-type transcriptional regulator, GntR family, at 3,190,597 to 3,191,265
_c30560
PGA1_c30570: PGA1_c30570 - Predicted metal-dependent hydrolase, at 3,191,343 to 3,192,035
_c30570
PGA1_c30580: PGA1_c30580 - TIGR02300 family protein, at 3,192,136 to 3,192,462
_c30580
PGA1_c30590: PGA1_c30590 - tRNA-Ala, at 3,192,638 to 3,192,713
_c30590
Position (kb)
3191
3192
3193 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3190.381 kb on - strand, within PGA1_c30550 at 3190.425 kb on - strand, within PGA1_c30550 at 3190.480 kb on + strand, within PGA1_c30550 at 3190.480 kb on + strand, within PGA1_c30550 at 3190.480 kb on + strand, within PGA1_c30550 at 3190.480 kb on - strand, within PGA1_c30550 at 3190.487 kb on + strand, within PGA1_c30550 at 3190.488 kb on - strand, within PGA1_c30550 at 3190.495 kb on + strand, within PGA1_c30550 at 3190.495 kb on - strand, within PGA1_c30550 at 3190.500 kb on - strand at 3190.505 kb on + strand at 3190.523 kb on - strand at 3190.528 kb on + strand at 3190.548 kb on - strand at 3191.200 kb on + strand at 3191.295 kb on + strand at 3191.318 kb on + strand at 3191.501 kb on + strand, within PGA1_c30570 at 3191.501 kb on + strand, within PGA1_c30570 at 3191.509 kb on - strand, within PGA1_c30570 at 3191.630 kb on + strand, within PGA1_c30570 at 3191.808 kb on + strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.821 kb on + strand, within PGA1_c30570 at 3191.980 kb on + strand at 3191.980 kb on + strand at 3191.988 kb on - strand at 3192.058 kb on + strand at 3192.058 kb on + strand at 3192.058 kb on + strand at 3192.060 kb on - strand at 3192.337 kb on + strand, within PGA1_c30580 at 3192.345 kb on - strand, within PGA1_c30580 at 3192.464 kb on - strand at 3192.497 kb on + strand at 3192.588 kb on + strand at 3192.869 kb on - strand at 3192.889 kb on + strand at 3192.923 kb on + strand at 3192.928 kb on + strand at 3192.938 kb on + strand at 3192.946 kb on - strand at 3192.946 kb on - strand at 3193.006 kb on + strand at 3193.013 kb on - strand at 3193.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 3,190,381 - PGA1_c30550 0.77 +1.0 3,190,425 - PGA1_c30550 0.82 -1.6 3,190,480 + PGA1_c30550 0.88 +0.6 3,190,480 + PGA1_c30550 0.88 +0.6 3,190,480 + PGA1_c30550 0.88 +0.0 3,190,480 - PGA1_c30550 0.88 -0.4 3,190,487 + PGA1_c30550 0.89 -0.0 3,190,488 - PGA1_c30550 0.89 +0.2 3,190,495 + PGA1_c30550 0.90 -0.1 3,190,495 - PGA1_c30550 0.90 +0.4 3,190,500 - +0.1 3,190,505 + +0.2 3,190,523 - -0.4 3,190,528 + +1.6 3,190,548 - -2.6 3,191,200 + -0.2 3,191,295 + +0.3 3,191,318 + +0.3 3,191,501 + PGA1_c30570 0.23 +1.0 3,191,501 + PGA1_c30570 0.23 -1.2 3,191,509 - PGA1_c30570 0.24 +0.1 3,191,630 + PGA1_c30570 0.41 +0.6 3,191,808 + PGA1_c30570 0.67 +0.8 3,191,816 - PGA1_c30570 0.68 -0.0 3,191,816 - PGA1_c30570 0.68 +0.5 3,191,816 - PGA1_c30570 0.68 +0.0 3,191,816 - PGA1_c30570 0.68 +1.6 3,191,821 + PGA1_c30570 0.69 -0.2 3,191,980 + +0.3 3,191,980 + +0.3 3,191,988 - -0.5 3,192,058 + +1.5 3,192,058 + -0.8 3,192,058 + -0.0 3,192,060 - +0.8 3,192,337 + PGA1_c30580 0.61 -0.6 3,192,345 - PGA1_c30580 0.64 -0.3 3,192,464 - -1.9 3,192,497 + +1.8 3,192,588 + -0.2 3,192,869 - -0.0 3,192,889 + +1.1 3,192,923 + -1.6 3,192,928 + -0.6 3,192,938 + -0.8 3,192,946 - +0.2 3,192,946 - +0.2 3,193,006 + -0.8 3,193,013 - +1.2 3,193,014 - -2.8
Or see this region's nucleotide sequence