Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29890 and PGA1_c29900 are separated by 205 nucleotides PGA1_c29900 and PGA1_c29910 are separated by 29 nucleotides PGA1_c29910 and PGA1_c29920 are separated by 215 nucleotides
PGA1_c29890: PGA1_c29890 - histidyl-tRNA synthetase HisS, at 3,125,223 to 3,126,710
_c29890
PGA1_c29900: PGA1_c29900 - protein slyX-like protein, at 3,126,916 to 3,127,110
_c29900
PGA1_c29910: PGA1_c29910 - lead, cadmium, zinc and mercury-transporting ATPase, at 3,127,140 to 3,129,320
_c29910
PGA1_c29920: PGA1_c29920 - alpha-methylacyl-CoA racemase, at 3,129,536 to 3,130,636
_c29920
Position (kb)
3127
3128
3129
3130 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3126.791 kb on + strand at 3126.811 kb on - strand at 3126.813 kb on + strand at 3126.821 kb on - strand at 3126.836 kb on + strand at 3126.843 kb on + strand at 3126.851 kb on - strand at 3126.868 kb on - strand at 3126.868 kb on - strand at 3126.889 kb on - strand at 3126.894 kb on + strand at 3126.899 kb on + strand at 3126.899 kb on + strand at 3126.902 kb on - strand at 3126.902 kb on - strand at 3126.907 kb on - strand at 3126.907 kb on - strand at 3126.907 kb on - strand at 3126.938 kb on + strand, within PGA1_c29900 at 3126.956 kb on + strand, within PGA1_c29900 at 3127.046 kb on - strand, within PGA1_c29900 at 3127.046 kb on - strand, within PGA1_c29900 at 3127.112 kb on - strand at 3127.263 kb on - strand at 3127.282 kb on + strand at 3127.283 kb on + strand at 3127.355 kb on - strand at 3127.360 kb on - strand, within PGA1_c29910 at 3127.435 kb on + strand, within PGA1_c29910 at 3127.443 kb on - strand, within PGA1_c29910 at 3127.443 kb on - strand, within PGA1_c29910 at 3127.469 kb on + strand, within PGA1_c29910 at 3127.512 kb on - strand, within PGA1_c29910 at 3127.513 kb on + strand, within PGA1_c29910 at 3127.531 kb on + strand, within PGA1_c29910 at 3127.533 kb on - strand, within PGA1_c29910 at 3127.595 kb on - strand, within PGA1_c29910 at 3127.682 kb on + strand, within PGA1_c29910 at 3127.705 kb on + strand, within PGA1_c29910 at 3127.715 kb on + strand, within PGA1_c29910 at 3127.715 kb on + strand, within PGA1_c29910 at 3127.741 kb on + strand, within PGA1_c29910 at 3127.741 kb on + strand, within PGA1_c29910 at 3127.741 kb on + strand, within PGA1_c29910 at 3127.761 kb on - strand, within PGA1_c29910 at 3127.780 kb on - strand, within PGA1_c29910 at 3127.783 kb on - strand, within PGA1_c29910 at 3127.783 kb on - strand, within PGA1_c29910 at 3127.785 kb on - strand, within PGA1_c29910 at 3127.850 kb on - strand, within PGA1_c29910 at 3127.851 kb on - strand, within PGA1_c29910 at 3127.869 kb on + strand, within PGA1_c29910 at 3127.885 kb on - strand, within PGA1_c29910 at 3127.885 kb on - strand, within PGA1_c29910 at 3127.885 kb on - strand, within PGA1_c29910 at 3127.914 kb on + strand, within PGA1_c29910 at 3127.947 kb on - strand, within PGA1_c29910 at 3127.970 kb on + strand, within PGA1_c29910 at 3127.994 kb on + strand, within PGA1_c29910 at 3128.000 kb on - strand, within PGA1_c29910 at 3128.056 kb on + strand, within PGA1_c29910 at 3128.056 kb on + strand, within PGA1_c29910 at 3128.056 kb on + strand, within PGA1_c29910 at 3128.064 kb on - strand, within PGA1_c29910 at 3128.075 kb on - strand, within PGA1_c29910 at 3128.086 kb on - strand, within PGA1_c29910 at 3128.108 kb on - strand, within PGA1_c29910 at 3128.121 kb on + strand, within PGA1_c29910 at 3128.179 kb on + strand, within PGA1_c29910 at 3128.179 kb on + strand, within PGA1_c29910 at 3128.187 kb on - strand, within PGA1_c29910 at 3128.214 kb on - strand, within PGA1_c29910 at 3128.260 kb on - strand, within PGA1_c29910 at 3128.264 kb on - strand, within PGA1_c29910 at 3128.267 kb on - strand, within PGA1_c29910 at 3128.330 kb on - strand, within PGA1_c29910 at 3128.359 kb on - strand, within PGA1_c29910 at 3128.362 kb on + strand, within PGA1_c29910 at 3128.370 kb on + strand, within PGA1_c29910 at 3128.370 kb on - strand, within PGA1_c29910 at 3128.370 kb on - strand, within PGA1_c29910 at 3128.380 kb on - strand, within PGA1_c29910 at 3128.443 kb on + strand, within PGA1_c29910 at 3128.454 kb on + strand, within PGA1_c29910 at 3128.479 kb on - strand, within PGA1_c29910 at 3128.486 kb on + strand, within PGA1_c29910 at 3128.590 kb on + strand, within PGA1_c29910 at 3128.595 kb on + strand, within PGA1_c29910 at 3128.603 kb on - strand, within PGA1_c29910 at 3128.603 kb on - strand, within PGA1_c29910 at 3128.603 kb on - strand, within PGA1_c29910 at 3128.715 kb on + strand, within PGA1_c29910 at 3128.736 kb on + strand, within PGA1_c29910 at 3128.754 kb on + strand, within PGA1_c29910 at 3128.766 kb on + strand, within PGA1_c29910 at 3128.829 kb on + strand, within PGA1_c29910 at 3128.838 kb on - strand, within PGA1_c29910 at 3128.863 kb on - strand, within PGA1_c29910 at 3128.897 kb on - strand, within PGA1_c29910 at 3128.924 kb on + strand, within PGA1_c29910 at 3128.924 kb on + strand, within PGA1_c29910 at 3128.931 kb on - strand, within PGA1_c29910 at 3128.932 kb on - strand, within PGA1_c29910 at 3128.932 kb on - strand, within PGA1_c29910 at 3128.932 kb on - strand, within PGA1_c29910 at 3128.932 kb on - strand, within PGA1_c29910 at 3128.950 kb on + strand, within PGA1_c29910 at 3128.950 kb on + strand, within PGA1_c29910 at 3128.950 kb on + strand, within PGA1_c29910 at 3128.963 kb on - strand, within PGA1_c29910 at 3128.963 kb on - strand, within PGA1_c29910 at 3129.004 kb on + strand, within PGA1_c29910 at 3129.069 kb on - strand, within PGA1_c29910 at 3129.092 kb on + strand, within PGA1_c29910 at 3129.248 kb on + strand at 3129.273 kb on - strand at 3129.278 kb on - strand at 3129.304 kb on + strand at 3129.304 kb on + strand at 3129.304 kb on + strand at 3129.304 kb on + strand at 3129.304 kb on + strand at 3129.304 kb on + strand at 3129.310 kb on + strand at 3129.342 kb on + strand at 3129.342 kb on + strand at 3129.342 kb on + strand at 3129.342 kb on + strand at 3129.342 kb on + strand at 3129.342 kb on + strand at 3129.342 kb on + strand at 3129.350 kb on - strand at 3129.421 kb on + strand at 3129.427 kb on - strand at 3129.429 kb on - strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.431 kb on + strand at 3129.434 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.439 kb on - strand at 3129.467 kb on + strand at 3129.501 kb on - strand at 3129.512 kb on + strand at 3129.531 kb on + strand at 3129.554 kb on - strand at 3129.569 kb on + strand at 3129.571 kb on + strand at 3129.577 kb on - strand at 3129.578 kb on + strand at 3129.578 kb on + strand at 3129.579 kb on - strand at 3129.579 kb on - strand at 3129.637 kb on + strand at 3129.646 kb on + strand, within PGA1_c29920 at 3129.651 kb on + strand, within PGA1_c29920 at 3129.651 kb on + strand, within PGA1_c29920 at 3129.654 kb on - strand, within PGA1_c29920 at 3129.659 kb on - strand, within PGA1_c29920 at 3129.664 kb on - strand, within PGA1_c29920 at 3129.718 kb on + strand, within PGA1_c29920 at 3129.723 kb on + strand, within PGA1_c29920 at 3129.811 kb on - strand, within PGA1_c29920 at 3129.816 kb on + strand, within PGA1_c29920 at 3129.819 kb on - strand, within PGA1_c29920 at 3129.834 kb on + strand, within PGA1_c29920 at 3129.843 kb on - strand, within PGA1_c29920 at 3129.853 kb on - strand, within PGA1_c29920 at 3129.878 kb on - strand, within PGA1_c29920 at 3129.883 kb on - strand, within PGA1_c29920 at 3129.888 kb on - strand, within PGA1_c29920 at 3129.916 kb on + strand, within PGA1_c29920 at 3129.916 kb on + strand, within PGA1_c29920 at 3129.989 kb on + strand, within PGA1_c29920 at 3130.014 kb on + strand, within PGA1_c29920 at 3130.046 kb on + strand, within PGA1_c29920 at 3130.046 kb on + strand, within PGA1_c29920 at 3130.114 kb on - strand, within PGA1_c29920 at 3130.115 kb on + strand, within PGA1_c29920 at 3130.116 kb on + strand, within PGA1_c29920 at 3130.127 kb on + strand, within PGA1_c29920 at 3130.138 kb on + strand, within PGA1_c29920 at 3130.146 kb on - strand, within PGA1_c29920 at 3130.146 kb on - strand, within PGA1_c29920 at 3130.154 kb on - strand, within PGA1_c29920 at 3130.164 kb on - strand, within PGA1_c29920 at 3130.182 kb on + strand, within PGA1_c29920 at 3130.182 kb on + strand, within PGA1_c29920 at 3130.190 kb on - strand, within PGA1_c29920 at 3130.205 kb on + strand, within PGA1_c29920 at 3130.208 kb on - strand, within PGA1_c29920 at 3130.213 kb on - strand, within PGA1_c29920 at 3130.227 kb on + strand, within PGA1_c29920 at 3130.238 kb on + strand, within PGA1_c29920 at 3130.246 kb on - strand, within PGA1_c29920 at 3130.265 kb on - strand, within PGA1_c29920 at 3130.293 kb on + strand, within PGA1_c29920 at 3130.303 kb on + strand, within PGA1_c29920
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 3,126,791 + -0.8 3,126,811 - +0.2 3,126,813 + +1.1 3,126,821 - -1.5 3,126,836 + -0.2 3,126,843 + -0.1 3,126,851 - -1.4 3,126,868 - -0.6 3,126,868 - +0.1 3,126,889 - +0.5 3,126,894 + +0.4 3,126,899 + +1.1 3,126,899 + +1.0 3,126,902 - +0.4 3,126,902 - -0.8 3,126,907 - -0.3 3,126,907 - -0.8 3,126,907 - -0.1 3,126,938 + PGA1_c29900 0.11 +0.5 3,126,956 + PGA1_c29900 0.21 -0.4 3,127,046 - PGA1_c29900 0.67 +0.1 3,127,046 - PGA1_c29900 0.67 +1.2 3,127,112 - -1.8 3,127,263 - -1.7 3,127,282 + -2.5 3,127,283 + -3.8 3,127,355 - -2.5 3,127,360 - PGA1_c29910 0.10 -3.8 3,127,435 + PGA1_c29910 0.14 -1.9 3,127,443 - PGA1_c29910 0.14 -1.7 3,127,443 - PGA1_c29910 0.14 -3.1 3,127,469 + PGA1_c29910 0.15 -2.4 3,127,512 - PGA1_c29910 0.17 -2.8 3,127,513 + PGA1_c29910 0.17 -3.0 3,127,531 + PGA1_c29910 0.18 -3.4 3,127,533 - PGA1_c29910 0.18 -0.5 3,127,595 - PGA1_c29910 0.21 -3.7 3,127,682 + PGA1_c29910 0.25 -2.7 3,127,705 + PGA1_c29910 0.26 -0.8 3,127,715 + PGA1_c29910 0.26 -1.7 3,127,715 + PGA1_c29910 0.26 -1.8 3,127,741 + PGA1_c29910 0.28 -1.2 3,127,741 + PGA1_c29910 0.28 -1.5 3,127,741 + PGA1_c29910 0.28 -1.8 3,127,761 - PGA1_c29910 0.28 -0.2 3,127,780 - PGA1_c29910 0.29 -4.5 3,127,783 - PGA1_c29910 0.29 -1.5 3,127,783 - PGA1_c29910 0.29 -4.0 3,127,785 - PGA1_c29910 0.30 -2.9 3,127,850 - PGA1_c29910 0.33 -1.8 3,127,851 - PGA1_c29910 0.33 -2.2 3,127,869 + PGA1_c29910 0.33 -1.7 3,127,885 - PGA1_c29910 0.34 -1.2 3,127,885 - PGA1_c29910 0.34 -2.8 3,127,885 - PGA1_c29910 0.34 -3.5 3,127,914 + PGA1_c29910 0.35 -2.8 3,127,947 - PGA1_c29910 0.37 -2.8 3,127,970 + PGA1_c29910 0.38 -2.2 3,127,994 + PGA1_c29910 0.39 -3.5 3,128,000 - PGA1_c29910 0.39 -0.8 3,128,056 + PGA1_c29910 0.42 -3.4 3,128,056 + PGA1_c29910 0.42 -3.6 3,128,056 + PGA1_c29910 0.42 -1.8 3,128,064 - PGA1_c29910 0.42 -3.6 3,128,075 - PGA1_c29910 0.43 -2.2 3,128,086 - PGA1_c29910 0.43 -3.1 3,128,108 - PGA1_c29910 0.44 -2.2 3,128,121 + PGA1_c29910 0.45 -2.0 3,128,179 + PGA1_c29910 0.48 -3.5 3,128,179 + PGA1_c29910 0.48 -2.9 3,128,187 - PGA1_c29910 0.48 -3.0 3,128,214 - PGA1_c29910 0.49 -3.7 3,128,260 - PGA1_c29910 0.51 -2.1 3,128,264 - PGA1_c29910 0.52 -2.0 3,128,267 - PGA1_c29910 0.52 -1.9 3,128,330 - PGA1_c29910 0.55 -2.0 3,128,359 - PGA1_c29910 0.56 -1.0 3,128,362 + PGA1_c29910 0.56 -3.0 3,128,370 + PGA1_c29910 0.56 -1.5 3,128,370 - PGA1_c29910 0.56 -2.7 3,128,370 - PGA1_c29910 0.56 -0.2 3,128,380 - PGA1_c29910 0.57 -2.5 3,128,443 + PGA1_c29910 0.60 -3.7 3,128,454 + PGA1_c29910 0.60 -1.5 3,128,479 - PGA1_c29910 0.61 -2.7 3,128,486 + PGA1_c29910 0.62 -2.8 3,128,590 + PGA1_c29910 0.66 -2.2 3,128,595 + PGA1_c29910 0.67 -2.3 3,128,603 - PGA1_c29910 0.67 -2.4 3,128,603 - PGA1_c29910 0.67 -3.7 3,128,603 - PGA1_c29910 0.67 -2.4 3,128,715 + PGA1_c29910 0.72 -4.1 3,128,736 + PGA1_c29910 0.73 -2.5 3,128,754 + PGA1_c29910 0.74 -2.8 3,128,766 + PGA1_c29910 0.75 -3.9 3,128,829 + PGA1_c29910 0.77 -0.4 3,128,838 - PGA1_c29910 0.78 -3.7 3,128,863 - PGA1_c29910 0.79 -2.4 3,128,897 - PGA1_c29910 0.81 -2.0 3,128,924 + PGA1_c29910 0.82 -2.4 3,128,924 + PGA1_c29910 0.82 -1.5 3,128,931 - PGA1_c29910 0.82 -3.1 3,128,932 - PGA1_c29910 0.82 -2.4 3,128,932 - PGA1_c29910 0.82 -3.2 3,128,932 - PGA1_c29910 0.82 -2.7 3,128,932 - PGA1_c29910 0.82 -3.5 3,128,950 + PGA1_c29910 0.83 +0.8 3,128,950 + PGA1_c29910 0.83 -2.3 3,128,950 + PGA1_c29910 0.83 -1.5 3,128,963 - PGA1_c29910 0.84 -2.5 3,128,963 - PGA1_c29910 0.84 -2.5 3,129,004 + PGA1_c29910 0.85 -0.2 3,129,069 - PGA1_c29910 0.88 -1.8 3,129,092 + PGA1_c29910 0.90 -1.2 3,129,248 + -1.2 3,129,273 - -3.5 3,129,278 - -1.7 3,129,304 + -2.2 3,129,304 + -0.2 3,129,304 + -2.2 3,129,304 + -2.4 3,129,304 + -3.2 3,129,304 + -3.3 3,129,310 + -1.8 3,129,342 + -2.9 3,129,342 + -1.3 3,129,342 + -1.4 3,129,342 + -0.0 3,129,342 + -1.0 3,129,342 + -0.9 3,129,342 + +0.3 3,129,350 - -0.3 3,129,421 + -0.2 3,129,427 - -2.1 3,129,429 - +0.9 3,129,431 + +2.6 3,129,431 + -2.0 3,129,431 + +0.9 3,129,431 + -2.5 3,129,431 + -0.2 3,129,431 + -0.7 3,129,431 + +0.5 3,129,431 + -0.8 3,129,431 + -0.6 3,129,431 + +0.6 3,129,431 + -0.3 3,129,431 + -0.5 3,129,431 + +0.7 3,129,431 + +0.1 3,129,434 - -1.8 3,129,439 - +0.2 3,129,439 - +0.4 3,129,439 - -1.8 3,129,439 - +0.1 3,129,439 - +0.6 3,129,439 - +0.3 3,129,439 - -0.0 3,129,439 - +0.8 3,129,439 - +1.8 3,129,439 - +0.8 3,129,439 - -0.5 3,129,439 - +0.8 3,129,439 - +0.8 3,129,439 - -1.2 3,129,439 - +0.6 3,129,439 - -1.0 3,129,439 - -0.0 3,129,439 - +0.6 3,129,467 + +1.0 3,129,501 - -0.4 3,129,512 + +0.3 3,129,531 + +1.7 3,129,554 - -0.2 3,129,569 + +0.4 3,129,571 + -0.5 3,129,577 - -0.4 3,129,578 + -0.7 3,129,578 + +0.6 3,129,579 - -0.8 3,129,579 - +0.8 3,129,637 + +0.8 3,129,646 + PGA1_c29920 0.10 +0.4 3,129,651 + PGA1_c29920 0.10 -1.7 3,129,651 + PGA1_c29920 0.10 +1.6 3,129,654 - PGA1_c29920 0.11 -1.5 3,129,659 - PGA1_c29920 0.11 +1.0 3,129,664 - PGA1_c29920 0.12 -0.2 3,129,718 + PGA1_c29920 0.17 +0.8 3,129,723 + PGA1_c29920 0.17 +0.3 3,129,811 - PGA1_c29920 0.25 +1.1 3,129,816 + PGA1_c29920 0.25 +0.8 3,129,819 - PGA1_c29920 0.26 +0.8 3,129,834 + PGA1_c29920 0.27 -0.4 3,129,843 - PGA1_c29920 0.28 -0.4 3,129,853 - PGA1_c29920 0.29 -0.1 3,129,878 - PGA1_c29920 0.31 -1.1 3,129,883 - PGA1_c29920 0.32 -0.8 3,129,888 - PGA1_c29920 0.32 +0.7 3,129,916 + PGA1_c29920 0.35 +0.1 3,129,916 + PGA1_c29920 0.35 -0.0 3,129,989 + PGA1_c29920 0.41 +0.1 3,130,014 + PGA1_c29920 0.43 +0.3 3,130,046 + PGA1_c29920 0.46 -1.1 3,130,046 + PGA1_c29920 0.46 -0.4 3,130,114 - PGA1_c29920 0.52 -0.2 3,130,115 + PGA1_c29920 0.53 +1.0 3,130,116 + PGA1_c29920 0.53 -1.7 3,130,127 + PGA1_c29920 0.54 +0.9 3,130,138 + PGA1_c29920 0.55 -0.9 3,130,146 - PGA1_c29920 0.55 +1.1 3,130,146 - PGA1_c29920 0.55 -0.4 3,130,154 - PGA1_c29920 0.56 +0.8 3,130,164 - PGA1_c29920 0.57 -1.8 3,130,182 + PGA1_c29920 0.59 -1.5 3,130,182 + PGA1_c29920 0.59 -1.0 3,130,190 - PGA1_c29920 0.59 -0.4 3,130,205 + PGA1_c29920 0.61 -1.8 3,130,208 - PGA1_c29920 0.61 +0.6 3,130,213 - PGA1_c29920 0.61 -2.7 3,130,227 + PGA1_c29920 0.63 -1.3 3,130,238 + PGA1_c29920 0.64 -0.4 3,130,246 - PGA1_c29920 0.64 +1.1 3,130,265 - PGA1_c29920 0.66 +1.5 3,130,293 + PGA1_c29920 0.69 -0.2 3,130,303 + PGA1_c29920 0.70 -0.1
Or see this region's nucleotide sequence