Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29300

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29270 and PGA1_c29280 are separated by 124 nucleotidesPGA1_c29280 and PGA1_c29290 are separated by 74 nucleotidesPGA1_c29290 and PGA1_c29300 overlap by 4 nucleotidesPGA1_c29300 and PGA1_c29310 are separated by 46 nucleotidesPGA1_c29310 and PGA1_c29320 overlap by 4 nucleotides PGA1_c29270: PGA1_c29270 - rhodocoxin reductase ThcD, at 3,061,879 to 3,063,090 _c29270 PGA1_c29280: PGA1_c29280 - peroxiredoxin, at 3,063,215 to 3,063,703 _c29280 PGA1_c29290: PGA1_c29290 - putative pterin 4 alpha carbinolamine dehydratase, at 3,063,778 to 3,064,071 _c29290 PGA1_c29300: PGA1_c29300 - Uncharacterized protein conserved in bacteria, at 3,064,068 to 3,065,255 _c29300 PGA1_c29310: PGA1_c29310 - glycerophosphoryl diester phosphodiesterase-like protein, at 3,065,302 to 3,066,075 _c29310 PGA1_c29320: PGA1_c29320 - putative endoribonuclease L-PSP, at 3,066,072 to 3,066,530 _c29320 Position (kb) 3064 3065 3066Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3063.120 kb on - strandat 3063.125 kb on + strandat 3063.166 kb on + strandat 3063.166 kb on + strandat 3063.166 kb on + strandat 3063.188 kb on - strandat 3063.248 kb on + strandat 3063.251 kb on - strandat 3063.252 kb on - strandat 3063.259 kb on + strandat 3063.273 kb on + strand, within PGA1_c29280at 3063.273 kb on + strand, within PGA1_c29280at 3063.291 kb on - strand, within PGA1_c29280at 3063.301 kb on + strand, within PGA1_c29280at 3063.301 kb on + strand, within PGA1_c29280at 3063.468 kb on + strand, within PGA1_c29280at 3063.468 kb on + strand, within PGA1_c29280at 3063.468 kb on + strand, within PGA1_c29280at 3063.468 kb on + strand, within PGA1_c29280at 3063.468 kb on + strand, within PGA1_c29280at 3063.476 kb on - strand, within PGA1_c29280at 3063.476 kb on - strand, within PGA1_c29280at 3063.605 kb on - strand, within PGA1_c29280at 3063.691 kb on + strandat 3063.784 kb on - strandat 3063.822 kb on + strand, within PGA1_c29290at 3063.834 kb on - strand, within PGA1_c29290at 3063.837 kb on + strand, within PGA1_c29290at 3063.860 kb on - strand, within PGA1_c29290at 3063.866 kb on - strand, within PGA1_c29290at 3063.868 kb on + strand, within PGA1_c29290at 3063.880 kb on + strand, within PGA1_c29290at 3063.887 kb on + strand, within PGA1_c29290at 3063.888 kb on - strand, within PGA1_c29290at 3063.979 kb on - strand, within PGA1_c29290at 3064.013 kb on + strand, within PGA1_c29290at 3064.013 kb on + strand, within PGA1_c29290at 3064.091 kb on - strandat 3064.092 kb on - strandat 3064.229 kb on - strand, within PGA1_c29300at 3064.292 kb on + strand, within PGA1_c29300at 3064.292 kb on + strand, within PGA1_c29300at 3064.341 kb on + strand, within PGA1_c29300at 3064.341 kb on + strand, within PGA1_c29300at 3064.341 kb on + strand, within PGA1_c29300at 3064.349 kb on - strand, within PGA1_c29300at 3064.349 kb on - strand, within PGA1_c29300at 3064.349 kb on - strand, within PGA1_c29300at 3064.357 kb on - strand, within PGA1_c29300at 3064.505 kb on - strand, within PGA1_c29300at 3064.525 kb on + strand, within PGA1_c29300at 3064.525 kb on + strand, within PGA1_c29300at 3064.533 kb on - strand, within PGA1_c29300at 3064.613 kb on - strand, within PGA1_c29300at 3064.650 kb on - strand, within PGA1_c29300at 3064.650 kb on - strand, within PGA1_c29300at 3064.704 kb on - strand, within PGA1_c29300at 3064.726 kb on + strand, within PGA1_c29300at 3064.755 kb on + strand, within PGA1_c29300at 3064.790 kb on - strand, within PGA1_c29300at 3064.795 kb on + strand, within PGA1_c29300at 3064.830 kb on + strand, within PGA1_c29300at 3064.839 kb on - strand, within PGA1_c29300at 3064.841 kb on + strand, within PGA1_c29300at 3064.851 kb on + strand, within PGA1_c29300at 3064.851 kb on + strand, within PGA1_c29300at 3064.854 kb on - strand, within PGA1_c29300at 3064.932 kb on - strand, within PGA1_c29300at 3065.011 kb on + strand, within PGA1_c29300at 3065.064 kb on - strand, within PGA1_c29300at 3065.064 kb on - strand, within PGA1_c29300at 3065.105 kb on + strand, within PGA1_c29300at 3065.200 kb on + strandat 3065.218 kb on + strandat 3065.239 kb on + strandat 3065.262 kb on - strandat 3065.263 kb on + strandat 3065.302 kb on - strandat 3065.303 kb on - strandat 3065.328 kb on + strandat 3065.328 kb on + strandat 3065.373 kb on - strandat 3065.376 kb on + strandat 3065.398 kb on - strand, within PGA1_c29310at 3065.398 kb on - strand, within PGA1_c29310at 3065.409 kb on + strand, within PGA1_c29310at 3065.417 kb on - strand, within PGA1_c29310at 3065.443 kb on + strand, within PGA1_c29310at 3065.443 kb on + strand, within PGA1_c29310at 3065.451 kb on - strand, within PGA1_c29310at 3065.465 kb on - strand, within PGA1_c29310at 3065.473 kb on + strand, within PGA1_c29310at 3065.545 kb on + strand, within PGA1_c29310at 3065.547 kb on + strand, within PGA1_c29310at 3065.547 kb on + strand, within PGA1_c29310at 3065.547 kb on + strand, within PGA1_c29310at 3065.555 kb on - strand, within PGA1_c29310at 3065.584 kb on - strand, within PGA1_c29310at 3065.635 kb on + strand, within PGA1_c29310at 3065.678 kb on + strand, within PGA1_c29310at 3065.775 kb on - strand, within PGA1_c29310at 3065.809 kb on + strand, within PGA1_c29310at 3065.861 kb on + strand, within PGA1_c29310at 3065.875 kb on - strand, within PGA1_c29310at 3065.875 kb on - strand, within PGA1_c29310at 3065.916 kb on + strand, within PGA1_c29310at 3065.924 kb on - strand, within PGA1_c29310at 3066.013 kb on + strandat 3066.030 kb on + strandat 3066.040 kb on - strandat 3066.063 kb on + strandat 3066.071 kb on + strandat 3066.106 kb on + strandat 3066.124 kb on - strand, within PGA1_c29320at 3066.185 kb on + strand, within PGA1_c29320

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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3,063,120 - +0.9
3,063,125 + -0.5
3,063,166 + -0.8
3,063,166 + +1.0
3,063,166 + +1.8
3,063,188 - +0.0
3,063,248 + +0.2
3,063,251 - +2.0
3,063,252 - +0.6
3,063,259 + +0.9
3,063,273 + PGA1_c29280 0.12 -0.5
3,063,273 + PGA1_c29280 0.12 +0.4
3,063,291 - PGA1_c29280 0.16 +0.7
3,063,301 + PGA1_c29280 0.18 -1.8
3,063,301 + PGA1_c29280 0.18 +0.0
3,063,468 + PGA1_c29280 0.52 +0.1
3,063,468 + PGA1_c29280 0.52 +0.3
3,063,468 + PGA1_c29280 0.52 -0.5
3,063,468 + PGA1_c29280 0.52 +0.5
3,063,468 + PGA1_c29280 0.52 +1.2
3,063,476 - PGA1_c29280 0.53 +1.0
3,063,476 - PGA1_c29280 0.53 +0.3
3,063,605 - PGA1_c29280 0.80 -0.2
3,063,691 + +0.3
3,063,784 - -0.3
3,063,822 + PGA1_c29290 0.15 -0.7
3,063,834 - PGA1_c29290 0.19 -0.6
3,063,837 + PGA1_c29290 0.20 -0.8
3,063,860 - PGA1_c29290 0.28 +0.8
3,063,866 - PGA1_c29290 0.30 +1.3
3,063,868 + PGA1_c29290 0.31 +1.5
3,063,880 + PGA1_c29290 0.35 +0.2
3,063,887 + PGA1_c29290 0.37 +1.8
3,063,888 - PGA1_c29290 0.37 +0.8
3,063,979 - PGA1_c29290 0.68 -2.8
3,064,013 + PGA1_c29290 0.80 -0.1
3,064,013 + PGA1_c29290 0.80 -0.9
3,064,091 - -1.2
3,064,092 - +0.3
3,064,229 - PGA1_c29300 0.14 +0.4
3,064,292 + PGA1_c29300 0.19 +0.6
3,064,292 + PGA1_c29300 0.19 +1.0
3,064,341 + PGA1_c29300 0.23 +0.4
3,064,341 + PGA1_c29300 0.23 +0.0
3,064,341 + PGA1_c29300 0.23 -0.8
3,064,349 - PGA1_c29300 0.24 +0.5
3,064,349 - PGA1_c29300 0.24 -1.0
3,064,349 - PGA1_c29300 0.24 +0.0
3,064,357 - PGA1_c29300 0.24 +0.0
3,064,505 - PGA1_c29300 0.37 +0.8
3,064,525 + PGA1_c29300 0.38 +0.4
3,064,525 + PGA1_c29300 0.38 -2.0
3,064,533 - PGA1_c29300 0.39 +0.5
3,064,613 - PGA1_c29300 0.46 +0.3
3,064,650 - PGA1_c29300 0.49 +1.8
3,064,650 - PGA1_c29300 0.49 +0.3
3,064,704 - PGA1_c29300 0.54 +1.2
3,064,726 + PGA1_c29300 0.55 -0.0
3,064,755 + PGA1_c29300 0.58 +1.3
3,064,790 - PGA1_c29300 0.61 +0.8
3,064,795 + PGA1_c29300 0.61 +0.4
3,064,830 + PGA1_c29300 0.64 +2.4
3,064,839 - PGA1_c29300 0.65 -0.9
3,064,841 + PGA1_c29300 0.65 +0.3
3,064,851 + PGA1_c29300 0.66 -0.5
3,064,851 + PGA1_c29300 0.66 +0.5
3,064,854 - PGA1_c29300 0.66 +0.1
3,064,932 - PGA1_c29300 0.73 +0.8
3,065,011 + PGA1_c29300 0.79 +0.6
3,065,064 - PGA1_c29300 0.84 +0.9
3,065,064 - PGA1_c29300 0.84 +0.3
3,065,105 + PGA1_c29300 0.87 +0.4
3,065,200 + -1.2
3,065,218 + -1.3
3,065,239 + +0.3
3,065,262 - +1.4
3,065,263 + -0.9
3,065,302 - +0.2
3,065,303 - -0.2
3,065,328 + +0.3
3,065,328 + -0.7
3,065,373 - -0.2
3,065,376 + -1.0
3,065,398 - PGA1_c29310 0.12 +0.4
3,065,398 - PGA1_c29310 0.12 -0.2
3,065,409 + PGA1_c29310 0.14 -1.0
3,065,417 - PGA1_c29310 0.15 +0.3
3,065,443 + PGA1_c29310 0.18 -1.7
3,065,443 + PGA1_c29310 0.18 -0.5
3,065,451 - PGA1_c29310 0.19 -1.3
3,065,465 - PGA1_c29310 0.21 -1.8
3,065,473 + PGA1_c29310 0.22 +0.3
3,065,545 + PGA1_c29310 0.31 +0.8
3,065,547 + PGA1_c29310 0.32 -0.2
3,065,547 + PGA1_c29310 0.32 +1.1
3,065,547 + PGA1_c29310 0.32 -0.8
3,065,555 - PGA1_c29310 0.33 -0.7
3,065,584 - PGA1_c29310 0.36 +0.8
3,065,635 + PGA1_c29310 0.43 -0.9
3,065,678 + PGA1_c29310 0.49 -0.7
3,065,775 - PGA1_c29310 0.61 +0.4
3,065,809 + PGA1_c29310 0.66 -1.2
3,065,861 + PGA1_c29310 0.72 -0.4
3,065,875 - PGA1_c29310 0.74 +0.1
3,065,875 - PGA1_c29310 0.74 +1.1
3,065,916 + PGA1_c29310 0.79 -0.6
3,065,924 - PGA1_c29310 0.80 +0.8
3,066,013 + -0.1
3,066,030 + +0.9
3,066,040 - +0.3
3,066,063 + +1.2
3,066,071 + +1.1
3,066,106 + +1.2
3,066,124 - PGA1_c29320 0.11 -0.7
3,066,185 + PGA1_c29320 0.25 +0.3

Or see this region's nucleotide sequence