Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29270 and PGA1_c29280 are separated by 124 nucleotides PGA1_c29280 and PGA1_c29290 are separated by 74 nucleotides PGA1_c29290 and PGA1_c29300 overlap by 4 nucleotides PGA1_c29300 and PGA1_c29310 are separated by 46 nucleotides PGA1_c29310 and PGA1_c29320 overlap by 4 nucleotides
PGA1_c29270: PGA1_c29270 - rhodocoxin reductase ThcD, at 3,061,879 to 3,063,090
_c29270
PGA1_c29280: PGA1_c29280 - peroxiredoxin, at 3,063,215 to 3,063,703
_c29280
PGA1_c29290: PGA1_c29290 - putative pterin 4 alpha carbinolamine dehydratase, at 3,063,778 to 3,064,071
_c29290
PGA1_c29300: PGA1_c29300 - Uncharacterized protein conserved in bacteria, at 3,064,068 to 3,065,255
_c29300
PGA1_c29310: PGA1_c29310 - glycerophosphoryl diester phosphodiesterase-like protein, at 3,065,302 to 3,066,075
_c29310
PGA1_c29320: PGA1_c29320 - putative endoribonuclease L-PSP, at 3,066,072 to 3,066,530
_c29320
Position (kb)
3064
3065
3066 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3063.120 kb on - strand at 3063.125 kb on + strand at 3063.166 kb on + strand at 3063.166 kb on + strand at 3063.166 kb on + strand at 3063.188 kb on - strand at 3063.248 kb on + strand at 3063.251 kb on - strand at 3063.252 kb on - strand at 3063.259 kb on + strand at 3063.273 kb on + strand, within PGA1_c29280 at 3063.273 kb on + strand, within PGA1_c29280 at 3063.291 kb on - strand, within PGA1_c29280 at 3063.301 kb on + strand, within PGA1_c29280 at 3063.301 kb on + strand, within PGA1_c29280 at 3063.468 kb on + strand, within PGA1_c29280 at 3063.468 kb on + strand, within PGA1_c29280 at 3063.468 kb on + strand, within PGA1_c29280 at 3063.468 kb on + strand, within PGA1_c29280 at 3063.468 kb on + strand, within PGA1_c29280 at 3063.476 kb on - strand, within PGA1_c29280 at 3063.476 kb on - strand, within PGA1_c29280 at 3063.605 kb on - strand, within PGA1_c29280 at 3063.691 kb on + strand at 3063.784 kb on - strand at 3063.822 kb on + strand, within PGA1_c29290 at 3063.834 kb on - strand, within PGA1_c29290 at 3063.837 kb on + strand, within PGA1_c29290 at 3063.860 kb on - strand, within PGA1_c29290 at 3063.866 kb on - strand, within PGA1_c29290 at 3063.868 kb on + strand, within PGA1_c29290 at 3063.880 kb on + strand, within PGA1_c29290 at 3063.887 kb on + strand, within PGA1_c29290 at 3063.888 kb on - strand, within PGA1_c29290 at 3063.979 kb on - strand, within PGA1_c29290 at 3064.013 kb on + strand, within PGA1_c29290 at 3064.013 kb on + strand, within PGA1_c29290 at 3064.091 kb on - strand at 3064.092 kb on - strand at 3064.229 kb on - strand, within PGA1_c29300 at 3064.292 kb on + strand, within PGA1_c29300 at 3064.292 kb on + strand, within PGA1_c29300 at 3064.341 kb on + strand, within PGA1_c29300 at 3064.341 kb on + strand, within PGA1_c29300 at 3064.341 kb on + strand, within PGA1_c29300 at 3064.349 kb on - strand, within PGA1_c29300 at 3064.349 kb on - strand, within PGA1_c29300 at 3064.349 kb on - strand, within PGA1_c29300 at 3064.357 kb on - strand, within PGA1_c29300 at 3064.505 kb on - strand, within PGA1_c29300 at 3064.525 kb on + strand, within PGA1_c29300 at 3064.525 kb on + strand, within PGA1_c29300 at 3064.533 kb on - strand, within PGA1_c29300 at 3064.613 kb on - strand, within PGA1_c29300 at 3064.650 kb on - strand, within PGA1_c29300 at 3064.650 kb on - strand, within PGA1_c29300 at 3064.704 kb on - strand, within PGA1_c29300 at 3064.726 kb on + strand, within PGA1_c29300 at 3064.755 kb on + strand, within PGA1_c29300 at 3064.790 kb on - strand, within PGA1_c29300 at 3064.795 kb on + strand, within PGA1_c29300 at 3064.830 kb on + strand, within PGA1_c29300 at 3064.839 kb on - strand, within PGA1_c29300 at 3064.841 kb on + strand, within PGA1_c29300 at 3064.851 kb on + strand, within PGA1_c29300 at 3064.851 kb on + strand, within PGA1_c29300 at 3064.854 kb on - strand, within PGA1_c29300 at 3064.932 kb on - strand, within PGA1_c29300 at 3065.011 kb on + strand, within PGA1_c29300 at 3065.064 kb on - strand, within PGA1_c29300 at 3065.064 kb on - strand, within PGA1_c29300 at 3065.105 kb on + strand, within PGA1_c29300 at 3065.200 kb on + strand at 3065.218 kb on + strand at 3065.239 kb on + strand at 3065.262 kb on - strand at 3065.263 kb on + strand at 3065.302 kb on - strand at 3065.303 kb on - strand at 3065.328 kb on + strand at 3065.328 kb on + strand at 3065.373 kb on - strand at 3065.376 kb on + strand at 3065.398 kb on - strand, within PGA1_c29310 at 3065.398 kb on - strand, within PGA1_c29310 at 3065.409 kb on + strand, within PGA1_c29310 at 3065.417 kb on - strand, within PGA1_c29310 at 3065.443 kb on + strand, within PGA1_c29310 at 3065.443 kb on + strand, within PGA1_c29310 at 3065.451 kb on - strand, within PGA1_c29310 at 3065.465 kb on - strand, within PGA1_c29310 at 3065.473 kb on + strand, within PGA1_c29310 at 3065.545 kb on + strand, within PGA1_c29310 at 3065.547 kb on + strand, within PGA1_c29310 at 3065.547 kb on + strand, within PGA1_c29310 at 3065.547 kb on + strand, within PGA1_c29310 at 3065.555 kb on - strand, within PGA1_c29310 at 3065.584 kb on - strand, within PGA1_c29310 at 3065.635 kb on + strand, within PGA1_c29310 at 3065.678 kb on + strand, within PGA1_c29310 at 3065.775 kb on - strand, within PGA1_c29310 at 3065.809 kb on + strand, within PGA1_c29310 at 3065.861 kb on + strand, within PGA1_c29310 at 3065.875 kb on - strand, within PGA1_c29310 at 3065.875 kb on - strand, within PGA1_c29310 at 3065.916 kb on + strand, within PGA1_c29310 at 3065.924 kb on - strand, within PGA1_c29310 at 3066.013 kb on + strand at 3066.030 kb on + strand at 3066.040 kb on - strand at 3066.063 kb on + strand at 3066.071 kb on + strand at 3066.106 kb on + strand at 3066.124 kb on - strand, within PGA1_c29320 at 3066.185 kb on + strand, within PGA1_c29320
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 3,063,120 - +0.9 3,063,125 + -0.5 3,063,166 + -0.8 3,063,166 + +1.0 3,063,166 + +1.8 3,063,188 - +0.0 3,063,248 + +0.2 3,063,251 - +2.0 3,063,252 - +0.6 3,063,259 + +0.9 3,063,273 + PGA1_c29280 0.12 -0.5 3,063,273 + PGA1_c29280 0.12 +0.4 3,063,291 - PGA1_c29280 0.16 +0.7 3,063,301 + PGA1_c29280 0.18 -1.8 3,063,301 + PGA1_c29280 0.18 +0.0 3,063,468 + PGA1_c29280 0.52 +0.1 3,063,468 + PGA1_c29280 0.52 +0.3 3,063,468 + PGA1_c29280 0.52 -0.5 3,063,468 + PGA1_c29280 0.52 +0.5 3,063,468 + PGA1_c29280 0.52 +1.2 3,063,476 - PGA1_c29280 0.53 +1.0 3,063,476 - PGA1_c29280 0.53 +0.3 3,063,605 - PGA1_c29280 0.80 -0.2 3,063,691 + +0.3 3,063,784 - -0.3 3,063,822 + PGA1_c29290 0.15 -0.7 3,063,834 - PGA1_c29290 0.19 -0.6 3,063,837 + PGA1_c29290 0.20 -0.8 3,063,860 - PGA1_c29290 0.28 +0.8 3,063,866 - PGA1_c29290 0.30 +1.3 3,063,868 + PGA1_c29290 0.31 +1.5 3,063,880 + PGA1_c29290 0.35 +0.2 3,063,887 + PGA1_c29290 0.37 +1.8 3,063,888 - PGA1_c29290 0.37 +0.8 3,063,979 - PGA1_c29290 0.68 -2.8 3,064,013 + PGA1_c29290 0.80 -0.1 3,064,013 + PGA1_c29290 0.80 -0.9 3,064,091 - -1.2 3,064,092 - +0.3 3,064,229 - PGA1_c29300 0.14 +0.4 3,064,292 + PGA1_c29300 0.19 +0.6 3,064,292 + PGA1_c29300 0.19 +1.0 3,064,341 + PGA1_c29300 0.23 +0.4 3,064,341 + PGA1_c29300 0.23 +0.0 3,064,341 + PGA1_c29300 0.23 -0.8 3,064,349 - PGA1_c29300 0.24 +0.5 3,064,349 - PGA1_c29300 0.24 -1.0 3,064,349 - PGA1_c29300 0.24 +0.0 3,064,357 - PGA1_c29300 0.24 +0.0 3,064,505 - PGA1_c29300 0.37 +0.8 3,064,525 + PGA1_c29300 0.38 +0.4 3,064,525 + PGA1_c29300 0.38 -2.0 3,064,533 - PGA1_c29300 0.39 +0.5 3,064,613 - PGA1_c29300 0.46 +0.3 3,064,650 - PGA1_c29300 0.49 +1.8 3,064,650 - PGA1_c29300 0.49 +0.3 3,064,704 - PGA1_c29300 0.54 +1.2 3,064,726 + PGA1_c29300 0.55 -0.0 3,064,755 + PGA1_c29300 0.58 +1.3 3,064,790 - PGA1_c29300 0.61 +0.8 3,064,795 + PGA1_c29300 0.61 +0.4 3,064,830 + PGA1_c29300 0.64 +2.4 3,064,839 - PGA1_c29300 0.65 -0.9 3,064,841 + PGA1_c29300 0.65 +0.3 3,064,851 + PGA1_c29300 0.66 -0.5 3,064,851 + PGA1_c29300 0.66 +0.5 3,064,854 - PGA1_c29300 0.66 +0.1 3,064,932 - PGA1_c29300 0.73 +0.8 3,065,011 + PGA1_c29300 0.79 +0.6 3,065,064 - PGA1_c29300 0.84 +0.9 3,065,064 - PGA1_c29300 0.84 +0.3 3,065,105 + PGA1_c29300 0.87 +0.4 3,065,200 + -1.2 3,065,218 + -1.3 3,065,239 + +0.3 3,065,262 - +1.4 3,065,263 + -0.9 3,065,302 - +0.2 3,065,303 - -0.2 3,065,328 + +0.3 3,065,328 + -0.7 3,065,373 - -0.2 3,065,376 + -1.0 3,065,398 - PGA1_c29310 0.12 +0.4 3,065,398 - PGA1_c29310 0.12 -0.2 3,065,409 + PGA1_c29310 0.14 -1.0 3,065,417 - PGA1_c29310 0.15 +0.3 3,065,443 + PGA1_c29310 0.18 -1.7 3,065,443 + PGA1_c29310 0.18 -0.5 3,065,451 - PGA1_c29310 0.19 -1.3 3,065,465 - PGA1_c29310 0.21 -1.8 3,065,473 + PGA1_c29310 0.22 +0.3 3,065,545 + PGA1_c29310 0.31 +0.8 3,065,547 + PGA1_c29310 0.32 -0.2 3,065,547 + PGA1_c29310 0.32 +1.1 3,065,547 + PGA1_c29310 0.32 -0.8 3,065,555 - PGA1_c29310 0.33 -0.7 3,065,584 - PGA1_c29310 0.36 +0.8 3,065,635 + PGA1_c29310 0.43 -0.9 3,065,678 + PGA1_c29310 0.49 -0.7 3,065,775 - PGA1_c29310 0.61 +0.4 3,065,809 + PGA1_c29310 0.66 -1.2 3,065,861 + PGA1_c29310 0.72 -0.4 3,065,875 - PGA1_c29310 0.74 +0.1 3,065,875 - PGA1_c29310 0.74 +1.1 3,065,916 + PGA1_c29310 0.79 -0.6 3,065,924 - PGA1_c29310 0.80 +0.8 3,066,013 + -0.1 3,066,030 + +0.9 3,066,040 - +0.3 3,066,063 + +1.2 3,066,071 + +1.1 3,066,106 + +1.2 3,066,124 - PGA1_c29320 0.11 -0.7 3,066,185 + PGA1_c29320 0.25 +0.3
Or see this region's nucleotide sequence