Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02960

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02940 and PGA1_c02950 are separated by 11 nucleotidesPGA1_c02950 and PGA1_c02960 overlap by 4 nucleotidesPGA1_c02960 and PGA1_c02970 overlap by 4 nucleotidesPGA1_c02970 and PGA1_c02980 are separated by 64 nucleotides PGA1_c02940: PGA1_c02940 - 4-hydroxybenzoate octaprenyltransferase UbiA, at 283,519 to 284,481 _c02940 PGA1_c02950: PGA1_c02950 - RNA methyltransferase-like protein, at 284,493 to 285,221 _c02950 PGA1_c02960: PGA1_c02960 - Predicted acetyltransferase, at 285,218 to 286,126 _c02960 PGA1_c02970: PGA1_c02970 - hypothetical protein, at 286,123 to 286,650 _c02970 PGA1_c02980: PGA1_c02980 - glutamate-cysteine ligase, at 286,715 to 288,085 _c02980 Position (kb) 285 286 287Strain fitness (log2 ratio) -2 -1 0 1at 284.528 kb on + strandat 284.538 kb on + strandat 284.550 kb on + strandat 284.558 kb on - strandat 284.601 kb on + strand, within PGA1_c02950at 284.621 kb on + strand, within PGA1_c02950at 284.633 kb on + strand, within PGA1_c02950at 284.639 kb on - strand, within PGA1_c02950at 284.647 kb on + strand, within PGA1_c02950at 284.672 kb on + strand, within PGA1_c02950at 284.677 kb on + strand, within PGA1_c02950at 284.798 kb on - strand, within PGA1_c02950at 284.810 kb on + strand, within PGA1_c02950at 284.810 kb on + strand, within PGA1_c02950at 284.865 kb on + strand, within PGA1_c02950at 284.873 kb on - strand, within PGA1_c02950at 284.880 kb on + strand, within PGA1_c02950at 284.908 kb on + strand, within PGA1_c02950at 284.913 kb on - strand, within PGA1_c02950at 284.962 kb on + strand, within PGA1_c02950at 284.965 kb on - strand, within PGA1_c02950at 285.000 kb on - strand, within PGA1_c02950at 285.008 kb on - strand, within PGA1_c02950at 285.056 kb on - strand, within PGA1_c02950at 285.056 kb on - strand, within PGA1_c02950at 285.124 kb on - strand, within PGA1_c02950at 285.130 kb on - strand, within PGA1_c02950at 285.136 kb on + strand, within PGA1_c02950at 285.136 kb on + strand, within PGA1_c02950at 285.136 kb on + strand, within PGA1_c02950at 285.144 kb on - strand, within PGA1_c02950at 285.144 kb on - strand, within PGA1_c02950at 285.144 kb on - strand, within PGA1_c02950at 285.171 kb on + strandat 285.331 kb on - strand, within PGA1_c02960at 285.341 kb on - strand, within PGA1_c02960at 285.392 kb on + strand, within PGA1_c02960at 285.433 kb on + strand, within PGA1_c02960at 285.503 kb on - strand, within PGA1_c02960at 285.541 kb on + strand, within PGA1_c02960at 285.554 kb on - strand, within PGA1_c02960at 285.561 kb on + strand, within PGA1_c02960at 285.647 kb on - strand, within PGA1_c02960at 285.696 kb on + strand, within PGA1_c02960at 285.810 kb on - strand, within PGA1_c02960at 285.895 kb on + strand, within PGA1_c02960at 285.903 kb on - strand, within PGA1_c02960at 285.947 kb on + strand, within PGA1_c02960at 285.950 kb on - strand, within PGA1_c02960at 285.955 kb on + strand, within PGA1_c02960at 285.955 kb on + strand, within PGA1_c02960at 285.955 kb on + strand, within PGA1_c02960at 285.963 kb on - strand, within PGA1_c02960at 285.978 kb on + strand, within PGA1_c02960at 285.986 kb on - strand, within PGA1_c02960at 285.992 kb on + strand, within PGA1_c02960at 286.013 kb on + strand, within PGA1_c02960at 286.104 kb on + strandat 286.108 kb on + strandat 286.108 kb on + strandat 286.110 kb on - strandat 286.111 kb on - strandat 286.153 kb on + strandat 286.161 kb on - strandat 286.161 kb on - strandat 286.186 kb on + strand, within PGA1_c02970at 286.243 kb on + strand, within PGA1_c02970at 286.243 kb on + strand, within PGA1_c02970at 286.243 kb on + strand, within PGA1_c02970at 286.401 kb on - strand, within PGA1_c02970at 286.416 kb on + strand, within PGA1_c02970at 286.425 kb on + strand, within PGA1_c02970at 286.433 kb on - strand, within PGA1_c02970at 286.463 kb on + strand, within PGA1_c02970at 286.476 kb on - strand, within PGA1_c02970at 286.485 kb on - strand, within PGA1_c02970at 286.505 kb on + strand, within PGA1_c02970at 286.526 kb on - strand, within PGA1_c02970at 286.526 kb on - strand, within PGA1_c02970at 286.536 kb on + strand, within PGA1_c02970at 286.616 kb on + strandat 286.632 kb on - strandat 286.645 kb on + strandat 286.652 kb on - strandat 286.696 kb on + strandat 286.704 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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284,528 + -1.7
284,538 + -1.3
284,550 + -0.9
284,558 - -1.3
284,601 + PGA1_c02950 0.15 +1.0
284,621 + PGA1_c02950 0.18 -1.2
284,633 + PGA1_c02950 0.19 -1.3
284,639 - PGA1_c02950 0.20 -0.3
284,647 + PGA1_c02950 0.21 -0.6
284,672 + PGA1_c02950 0.25 -0.2
284,677 + PGA1_c02950 0.25 +0.8
284,798 - PGA1_c02950 0.42 -1.4
284,810 + PGA1_c02950 0.43 -1.2
284,810 + PGA1_c02950 0.43 +0.8
284,865 + PGA1_c02950 0.51 +1.0
284,873 - PGA1_c02950 0.52 +1.3
284,880 + PGA1_c02950 0.53 +0.8
284,908 + PGA1_c02950 0.57 -0.6
284,913 - PGA1_c02950 0.58 -0.8
284,962 + PGA1_c02950 0.64 -0.1
284,965 - PGA1_c02950 0.65 +1.3
285,000 - PGA1_c02950 0.70 -0.0
285,008 - PGA1_c02950 0.71 -0.3
285,056 - PGA1_c02950 0.77 -0.5
285,056 - PGA1_c02950 0.77 -0.1
285,124 - PGA1_c02950 0.87 -0.4
285,130 - PGA1_c02950 0.87 +0.4
285,136 + PGA1_c02950 0.88 -0.3
285,136 + PGA1_c02950 0.88 -0.2
285,136 + PGA1_c02950 0.88 -0.1
285,144 - PGA1_c02950 0.89 -1.2
285,144 - PGA1_c02950 0.89 +0.3
285,144 - PGA1_c02950 0.89 +0.3
285,171 + -1.4
285,331 - PGA1_c02960 0.12 +1.3
285,341 - PGA1_c02960 0.14 +1.4
285,392 + PGA1_c02960 0.19 +1.1
285,433 + PGA1_c02960 0.24 +0.1
285,503 - PGA1_c02960 0.31 -0.3
285,541 + PGA1_c02960 0.36 +0.8
285,554 - PGA1_c02960 0.37 -0.5
285,561 + PGA1_c02960 0.38 +0.5
285,647 - PGA1_c02960 0.47 -0.2
285,696 + PGA1_c02960 0.53 -0.7
285,810 - PGA1_c02960 0.65 +0.8
285,895 + PGA1_c02960 0.74 +1.0
285,903 - PGA1_c02960 0.75 +1.0
285,947 + PGA1_c02960 0.80 -0.9
285,950 - PGA1_c02960 0.81 +0.5
285,955 + PGA1_c02960 0.81 -2.0
285,955 + PGA1_c02960 0.81 -0.0
285,955 + PGA1_c02960 0.81 +0.1
285,963 - PGA1_c02960 0.82 +0.2
285,978 + PGA1_c02960 0.84 +1.4
285,986 - PGA1_c02960 0.84 +0.4
285,992 + PGA1_c02960 0.85 -0.7
286,013 + PGA1_c02960 0.87 +1.7
286,104 + +1.4
286,108 + +0.6
286,108 + -0.4
286,110 - +0.2
286,111 - -0.1
286,153 + -1.5
286,161 - +0.8
286,161 - -1.2
286,186 + PGA1_c02970 0.12 +0.8
286,243 + PGA1_c02970 0.23 +0.3
286,243 + PGA1_c02970 0.23 -0.3
286,243 + PGA1_c02970 0.23 -1.9
286,401 - PGA1_c02970 0.53 +0.1
286,416 + PGA1_c02970 0.55 -0.6
286,425 + PGA1_c02970 0.57 +0.1
286,433 - PGA1_c02970 0.59 -0.9
286,463 + PGA1_c02970 0.64 +0.3
286,476 - PGA1_c02970 0.67 +1.0
286,485 - PGA1_c02970 0.69 -1.0
286,505 + PGA1_c02970 0.72 +0.8
286,526 - PGA1_c02970 0.76 -0.4
286,526 - PGA1_c02970 0.76 +0.1
286,536 + PGA1_c02970 0.78 -0.2
286,616 + -2.7
286,632 - -0.6
286,645 + +1.4
286,652 - +0.6
286,696 + +0.5
286,704 - +0.3

Or see this region's nucleotide sequence