Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c27910 and PGA1_c27920 are separated by 177 nucleotides PGA1_c27920 and PGA1_c27930 are separated by 77 nucleotides
PGA1_c27910: PGA1_c27910 - N-acetylglucosamine kinase (EC 2.7.1.59) (from data) , at 2,908,870 to 2,909,772
_c27910
PGA1_c27920: PGA1_c27920 - N-acetylmuramic acid 6-phosphate etherase MurQ, at 2,909,950 to 2,910,891
_c27920
PGA1_c27930: PGA1_c27930 - N-Acetyl-D-glucosamine ABC transport system, periplasmic substrate-binding component (from data) , at 2,910,969 to 2,912,222
_c27930
Position (kb)
2909
2910
2911 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2909.065 kb on - strand, within PGA1_c27910 at 2909.073 kb on - strand, within PGA1_c27910 at 2909.118 kb on - strand, within PGA1_c27910 at 2909.125 kb on - strand, within PGA1_c27910 at 2909.255 kb on - strand, within PGA1_c27910 at 2909.328 kb on - strand, within PGA1_c27910 at 2909.328 kb on - strand, within PGA1_c27910 at 2909.396 kb on + strand, within PGA1_c27910 at 2909.396 kb on + strand, within PGA1_c27910 at 2909.404 kb on - strand, within PGA1_c27910 at 2909.404 kb on - strand, within PGA1_c27910 at 2909.411 kb on + strand, within PGA1_c27910 at 2909.525 kb on - strand, within PGA1_c27910 at 2909.577 kb on - strand, within PGA1_c27910 at 2909.577 kb on - strand, within PGA1_c27910 at 2909.577 kb on - strand, within PGA1_c27910 at 2909.654 kb on - strand, within PGA1_c27910 at 2909.715 kb on + strand at 2909.953 kb on + strand at 2909.961 kb on - strand at 2909.971 kb on - strand at 2909.974 kb on + strand at 2909.981 kb on - strand at 2909.982 kb on + strand at 2909.987 kb on + strand at 2909.987 kb on + strand at 2909.997 kb on + strand at 2909.997 kb on + strand at 2910.005 kb on - strand at 2910.037 kb on - strand at 2910.097 kb on + strand, within PGA1_c27920 at 2910.141 kb on - strand, within PGA1_c27920 at 2910.141 kb on - strand, within PGA1_c27920 at 2910.175 kb on - strand, within PGA1_c27920 at 2910.208 kb on + strand, within PGA1_c27920 at 2910.215 kb on + strand, within PGA1_c27920 at 2910.215 kb on + strand, within PGA1_c27920 at 2910.242 kb on - strand, within PGA1_c27920 at 2910.280 kb on - strand, within PGA1_c27920 at 2910.412 kb on - strand, within PGA1_c27920 at 2910.433 kb on - strand, within PGA1_c27920 at 2910.454 kb on + strand, within PGA1_c27920 at 2910.462 kb on - strand, within PGA1_c27920 at 2910.495 kb on + strand, within PGA1_c27920 at 2910.495 kb on + strand, within PGA1_c27920 at 2910.516 kb on - strand, within PGA1_c27920 at 2910.516 kb on - strand, within PGA1_c27920 at 2910.530 kb on + strand, within PGA1_c27920 at 2910.548 kb on + strand, within PGA1_c27920 at 2910.553 kb on - strand, within PGA1_c27920 at 2910.556 kb on - strand, within PGA1_c27920 at 2910.609 kb on + strand, within PGA1_c27920 at 2910.674 kb on - strand, within PGA1_c27920 at 2910.725 kb on + strand, within PGA1_c27920 at 2910.733 kb on - strand, within PGA1_c27920 at 2910.733 kb on - strand, within PGA1_c27920 at 2910.773 kb on - strand, within PGA1_c27920 at 2910.799 kb on - strand at 2910.804 kb on + strand at 2910.815 kb on - strand at 2910.851 kb on + strand at 2910.885 kb on + strand at 2910.885 kb on + strand at 2910.885 kb on + strand at 2910.886 kb on + strand at 2910.917 kb on - strand at 2910.996 kb on - strand at 2910.996 kb on - strand at 2911.008 kb on + strand at 2911.053 kb on + strand at 2911.089 kb on - strand at 2911.099 kb on - strand, within PGA1_c27930 at 2911.116 kb on - strand, within PGA1_c27930 at 2911.176 kb on + strand, within PGA1_c27930 at 2911.191 kb on - strand, within PGA1_c27930 at 2911.214 kb on + strand, within PGA1_c27930 at 2911.231 kb on + strand, within PGA1_c27930 at 2911.262 kb on + strand, within PGA1_c27930 at 2911.293 kb on + strand, within PGA1_c27930 at 2911.304 kb on - strand, within PGA1_c27930 at 2911.408 kb on + strand, within PGA1_c27930 at 2911.419 kb on - strand, within PGA1_c27930 at 2911.423 kb on + strand, within PGA1_c27930 at 2911.429 kb on - strand, within PGA1_c27930 at 2911.480 kb on - strand, within PGA1_c27930 at 2911.497 kb on + strand, within PGA1_c27930 at 2911.505 kb on - strand, within PGA1_c27930 at 2911.510 kb on - strand, within PGA1_c27930 at 2911.588 kb on + strand, within PGA1_c27930 at 2911.588 kb on + strand, within PGA1_c27930 at 2911.588 kb on + strand, within PGA1_c27930 at 2911.596 kb on - strand, within PGA1_c27930 at 2911.606 kb on - strand, within PGA1_c27930 at 2911.643 kb on + strand, within PGA1_c27930 at 2911.644 kb on + strand, within PGA1_c27930 at 2911.691 kb on + strand, within PGA1_c27930 at 2911.692 kb on + strand, within PGA1_c27930 at 2911.697 kb on + strand, within PGA1_c27930 at 2911.700 kb on - strand, within PGA1_c27930 at 2911.725 kb on + strand, within PGA1_c27930 at 2911.849 kb on + strand, within PGA1_c27930 at 2911.877 kb on + strand, within PGA1_c27930
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 2,909,065 - PGA1_c27910 0.22 +1.2 2,909,073 - PGA1_c27910 0.22 -0.6 2,909,118 - PGA1_c27910 0.27 +0.6 2,909,125 - PGA1_c27910 0.28 -0.6 2,909,255 - PGA1_c27910 0.43 -2.1 2,909,328 - PGA1_c27910 0.51 -0.1 2,909,328 - PGA1_c27910 0.51 -2.3 2,909,396 + PGA1_c27910 0.58 +0.0 2,909,396 + PGA1_c27910 0.58 -3.0 2,909,404 - PGA1_c27910 0.59 +0.0 2,909,404 - PGA1_c27910 0.59 +1.7 2,909,411 + PGA1_c27910 0.60 +0.1 2,909,525 - PGA1_c27910 0.73 +0.7 2,909,577 - PGA1_c27910 0.78 -0.6 2,909,577 - PGA1_c27910 0.78 -0.2 2,909,577 - PGA1_c27910 0.78 +1.2 2,909,654 - PGA1_c27910 0.87 -1.3 2,909,715 + -0.5 2,909,953 + -0.3 2,909,961 - -2.1 2,909,971 - +0.3 2,909,974 + +0.2 2,909,981 - +1.2 2,909,982 + -0.3 2,909,987 + -1.6 2,909,987 + -0.1 2,909,997 + -1.3 2,909,997 + -0.5 2,910,005 - +0.7 2,910,037 - +0.9 2,910,097 + PGA1_c27920 0.16 +1.0 2,910,141 - PGA1_c27920 0.20 -0.6 2,910,141 - PGA1_c27920 0.20 +0.0 2,910,175 - PGA1_c27920 0.24 -2.1 2,910,208 + PGA1_c27920 0.27 -0.5 2,910,215 + PGA1_c27920 0.28 -0.9 2,910,215 + PGA1_c27920 0.28 +0.3 2,910,242 - PGA1_c27920 0.31 +0.9 2,910,280 - PGA1_c27920 0.35 +1.1 2,910,412 - PGA1_c27920 0.49 -0.5 2,910,433 - PGA1_c27920 0.51 +0.3 2,910,454 + PGA1_c27920 0.54 +1.1 2,910,462 - PGA1_c27920 0.54 +1.1 2,910,495 + PGA1_c27920 0.58 -0.1 2,910,495 + PGA1_c27920 0.58 +0.5 2,910,516 - PGA1_c27920 0.60 +1.4 2,910,516 - PGA1_c27920 0.60 +0.7 2,910,530 + PGA1_c27920 0.62 +1.0 2,910,548 + PGA1_c27920 0.63 +0.1 2,910,553 - PGA1_c27920 0.64 +0.8 2,910,556 - PGA1_c27920 0.64 +0.9 2,910,609 + PGA1_c27920 0.70 +1.3 2,910,674 - PGA1_c27920 0.77 -1.6 2,910,725 + PGA1_c27920 0.82 +0.1 2,910,733 - PGA1_c27920 0.83 -0.9 2,910,733 - PGA1_c27920 0.83 +2.2 2,910,773 - PGA1_c27920 0.87 -0.3 2,910,799 - -2.0 2,910,804 + -0.5 2,910,815 - +0.7 2,910,851 + +0.6 2,910,885 + -0.0 2,910,885 + -2.4 2,910,885 + -0.5 2,910,886 + +1.0 2,910,917 - -0.0 2,910,996 - -3.2 2,910,996 - +0.1 2,911,008 + +0.4 2,911,053 + +0.6 2,911,089 - +2.3 2,911,099 - PGA1_c27930 0.10 -0.6 2,911,116 - PGA1_c27930 0.12 -0.5 2,911,176 + PGA1_c27930 0.17 -0.1 2,911,191 - PGA1_c27930 0.18 +0.1 2,911,214 + PGA1_c27930 0.20 -0.7 2,911,231 + PGA1_c27930 0.21 -1.4 2,911,262 + PGA1_c27930 0.23 +0.1 2,911,293 + PGA1_c27930 0.26 -0.3 2,911,304 - PGA1_c27930 0.27 -1.0 2,911,408 + PGA1_c27930 0.35 +0.4 2,911,419 - PGA1_c27930 0.36 +0.9 2,911,423 + PGA1_c27930 0.36 +1.0 2,911,429 - PGA1_c27930 0.37 +0.0 2,911,480 - PGA1_c27930 0.41 +0.3 2,911,497 + PGA1_c27930 0.42 -0.0 2,911,505 - PGA1_c27930 0.43 +1.4 2,911,510 - PGA1_c27930 0.43 -2.6 2,911,588 + PGA1_c27930 0.49 +0.4 2,911,588 + PGA1_c27930 0.49 +0.6 2,911,588 + PGA1_c27930 0.49 +0.4 2,911,596 - PGA1_c27930 0.50 +0.2 2,911,606 - PGA1_c27930 0.51 -1.6 2,911,643 + PGA1_c27930 0.54 +0.8 2,911,644 + PGA1_c27930 0.54 -1.0 2,911,691 + PGA1_c27930 0.58 -0.9 2,911,692 + PGA1_c27930 0.58 +0.5 2,911,697 + PGA1_c27930 0.58 +1.3 2,911,700 - PGA1_c27930 0.58 -0.5 2,911,725 + PGA1_c27930 0.60 +0.1 2,911,849 + PGA1_c27930 0.70 +0.1 2,911,877 + PGA1_c27930 0.72 -1.1
Or see this region's nucleotide sequence