Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27920

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27910 and PGA1_c27920 are separated by 177 nucleotidesPGA1_c27920 and PGA1_c27930 are separated by 77 nucleotides PGA1_c27910: PGA1_c27910 - N-acetylglucosamine kinase (EC 2.7.1.59) (from data), at 2,908,870 to 2,909,772 _c27910 PGA1_c27920: PGA1_c27920 - N-acetylmuramic acid 6-phosphate etherase MurQ, at 2,909,950 to 2,910,891 _c27920 PGA1_c27930: PGA1_c27930 - N-Acetyl-D-glucosamine ABC transport system, periplasmic substrate-binding component (from data), at 2,910,969 to 2,912,222 _c27930 Position (kb) 2909 2910 2911Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2909.065 kb on - strand, within PGA1_c27910at 2909.073 kb on - strand, within PGA1_c27910at 2909.118 kb on - strand, within PGA1_c27910at 2909.125 kb on - strand, within PGA1_c27910at 2909.255 kb on - strand, within PGA1_c27910at 2909.328 kb on - strand, within PGA1_c27910at 2909.328 kb on - strand, within PGA1_c27910at 2909.396 kb on + strand, within PGA1_c27910at 2909.396 kb on + strand, within PGA1_c27910at 2909.404 kb on - strand, within PGA1_c27910at 2909.404 kb on - strand, within PGA1_c27910at 2909.411 kb on + strand, within PGA1_c27910at 2909.525 kb on - strand, within PGA1_c27910at 2909.577 kb on - strand, within PGA1_c27910at 2909.577 kb on - strand, within PGA1_c27910at 2909.577 kb on - strand, within PGA1_c27910at 2909.654 kb on - strand, within PGA1_c27910at 2909.715 kb on + strandat 2909.953 kb on + strandat 2909.961 kb on - strandat 2909.971 kb on - strandat 2909.974 kb on + strandat 2909.981 kb on - strandat 2909.982 kb on + strandat 2909.987 kb on + strandat 2909.987 kb on + strandat 2909.997 kb on + strandat 2909.997 kb on + strandat 2910.005 kb on - strandat 2910.037 kb on - strandat 2910.097 kb on + strand, within PGA1_c27920at 2910.141 kb on - strand, within PGA1_c27920at 2910.141 kb on - strand, within PGA1_c27920at 2910.175 kb on - strand, within PGA1_c27920at 2910.208 kb on + strand, within PGA1_c27920at 2910.215 kb on + strand, within PGA1_c27920at 2910.215 kb on + strand, within PGA1_c27920at 2910.242 kb on - strand, within PGA1_c27920at 2910.280 kb on - strand, within PGA1_c27920at 2910.412 kb on - strand, within PGA1_c27920at 2910.433 kb on - strand, within PGA1_c27920at 2910.454 kb on + strand, within PGA1_c27920at 2910.462 kb on - strand, within PGA1_c27920at 2910.495 kb on + strand, within PGA1_c27920at 2910.495 kb on + strand, within PGA1_c27920at 2910.516 kb on - strand, within PGA1_c27920at 2910.516 kb on - strand, within PGA1_c27920at 2910.530 kb on + strand, within PGA1_c27920at 2910.548 kb on + strand, within PGA1_c27920at 2910.553 kb on - strand, within PGA1_c27920at 2910.556 kb on - strand, within PGA1_c27920at 2910.609 kb on + strand, within PGA1_c27920at 2910.674 kb on - strand, within PGA1_c27920at 2910.725 kb on + strand, within PGA1_c27920at 2910.733 kb on - strand, within PGA1_c27920at 2910.733 kb on - strand, within PGA1_c27920at 2910.773 kb on - strand, within PGA1_c27920at 2910.799 kb on - strandat 2910.804 kb on + strandat 2910.815 kb on - strandat 2910.851 kb on + strandat 2910.885 kb on + strandat 2910.885 kb on + strandat 2910.885 kb on + strandat 2910.886 kb on + strandat 2910.917 kb on - strandat 2910.996 kb on - strandat 2910.996 kb on - strandat 2911.008 kb on + strandat 2911.053 kb on + strandat 2911.089 kb on - strandat 2911.099 kb on - strand, within PGA1_c27930at 2911.116 kb on - strand, within PGA1_c27930at 2911.176 kb on + strand, within PGA1_c27930at 2911.191 kb on - strand, within PGA1_c27930at 2911.214 kb on + strand, within PGA1_c27930at 2911.231 kb on + strand, within PGA1_c27930at 2911.262 kb on + strand, within PGA1_c27930at 2911.293 kb on + strand, within PGA1_c27930at 2911.304 kb on - strand, within PGA1_c27930at 2911.408 kb on + strand, within PGA1_c27930at 2911.419 kb on - strand, within PGA1_c27930at 2911.423 kb on + strand, within PGA1_c27930at 2911.429 kb on - strand, within PGA1_c27930at 2911.480 kb on - strand, within PGA1_c27930at 2911.497 kb on + strand, within PGA1_c27930at 2911.505 kb on - strand, within PGA1_c27930at 2911.510 kb on - strand, within PGA1_c27930at 2911.588 kb on + strand, within PGA1_c27930at 2911.588 kb on + strand, within PGA1_c27930at 2911.588 kb on + strand, within PGA1_c27930at 2911.596 kb on - strand, within PGA1_c27930at 2911.606 kb on - strand, within PGA1_c27930at 2911.643 kb on + strand, within PGA1_c27930at 2911.644 kb on + strand, within PGA1_c27930at 2911.691 kb on + strand, within PGA1_c27930at 2911.692 kb on + strand, within PGA1_c27930at 2911.697 kb on + strand, within PGA1_c27930at 2911.700 kb on - strand, within PGA1_c27930at 2911.725 kb on + strand, within PGA1_c27930at 2911.849 kb on + strand, within PGA1_c27930at 2911.877 kb on + strand, within PGA1_c27930

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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2,909,065 - PGA1_c27910 0.22 +1.2
2,909,073 - PGA1_c27910 0.22 -0.6
2,909,118 - PGA1_c27910 0.27 +0.6
2,909,125 - PGA1_c27910 0.28 -0.6
2,909,255 - PGA1_c27910 0.43 -2.1
2,909,328 - PGA1_c27910 0.51 -0.1
2,909,328 - PGA1_c27910 0.51 -2.3
2,909,396 + PGA1_c27910 0.58 +0.0
2,909,396 + PGA1_c27910 0.58 -3.0
2,909,404 - PGA1_c27910 0.59 +0.0
2,909,404 - PGA1_c27910 0.59 +1.7
2,909,411 + PGA1_c27910 0.60 +0.1
2,909,525 - PGA1_c27910 0.73 +0.7
2,909,577 - PGA1_c27910 0.78 -0.6
2,909,577 - PGA1_c27910 0.78 -0.2
2,909,577 - PGA1_c27910 0.78 +1.2
2,909,654 - PGA1_c27910 0.87 -1.3
2,909,715 + -0.5
2,909,953 + -0.3
2,909,961 - -2.1
2,909,971 - +0.3
2,909,974 + +0.2
2,909,981 - +1.2
2,909,982 + -0.3
2,909,987 + -1.6
2,909,987 + -0.1
2,909,997 + -1.3
2,909,997 + -0.5
2,910,005 - +0.7
2,910,037 - +0.9
2,910,097 + PGA1_c27920 0.16 +1.0
2,910,141 - PGA1_c27920 0.20 -0.6
2,910,141 - PGA1_c27920 0.20 +0.0
2,910,175 - PGA1_c27920 0.24 -2.1
2,910,208 + PGA1_c27920 0.27 -0.5
2,910,215 + PGA1_c27920 0.28 -0.9
2,910,215 + PGA1_c27920 0.28 +0.3
2,910,242 - PGA1_c27920 0.31 +0.9
2,910,280 - PGA1_c27920 0.35 +1.1
2,910,412 - PGA1_c27920 0.49 -0.5
2,910,433 - PGA1_c27920 0.51 +0.3
2,910,454 + PGA1_c27920 0.54 +1.1
2,910,462 - PGA1_c27920 0.54 +1.1
2,910,495 + PGA1_c27920 0.58 -0.1
2,910,495 + PGA1_c27920 0.58 +0.5
2,910,516 - PGA1_c27920 0.60 +1.4
2,910,516 - PGA1_c27920 0.60 +0.7
2,910,530 + PGA1_c27920 0.62 +1.0
2,910,548 + PGA1_c27920 0.63 +0.1
2,910,553 - PGA1_c27920 0.64 +0.8
2,910,556 - PGA1_c27920 0.64 +0.9
2,910,609 + PGA1_c27920 0.70 +1.3
2,910,674 - PGA1_c27920 0.77 -1.6
2,910,725 + PGA1_c27920 0.82 +0.1
2,910,733 - PGA1_c27920 0.83 -0.9
2,910,733 - PGA1_c27920 0.83 +2.2
2,910,773 - PGA1_c27920 0.87 -0.3
2,910,799 - -2.0
2,910,804 + -0.5
2,910,815 - +0.7
2,910,851 + +0.6
2,910,885 + -0.0
2,910,885 + -2.4
2,910,885 + -0.5
2,910,886 + +1.0
2,910,917 - -0.0
2,910,996 - -3.2
2,910,996 - +0.1
2,911,008 + +0.4
2,911,053 + +0.6
2,911,089 - +2.3
2,911,099 - PGA1_c27930 0.10 -0.6
2,911,116 - PGA1_c27930 0.12 -0.5
2,911,176 + PGA1_c27930 0.17 -0.1
2,911,191 - PGA1_c27930 0.18 +0.1
2,911,214 + PGA1_c27930 0.20 -0.7
2,911,231 + PGA1_c27930 0.21 -1.4
2,911,262 + PGA1_c27930 0.23 +0.1
2,911,293 + PGA1_c27930 0.26 -0.3
2,911,304 - PGA1_c27930 0.27 -1.0
2,911,408 + PGA1_c27930 0.35 +0.4
2,911,419 - PGA1_c27930 0.36 +0.9
2,911,423 + PGA1_c27930 0.36 +1.0
2,911,429 - PGA1_c27930 0.37 +0.0
2,911,480 - PGA1_c27930 0.41 +0.3
2,911,497 + PGA1_c27930 0.42 -0.0
2,911,505 - PGA1_c27930 0.43 +1.4
2,911,510 - PGA1_c27930 0.43 -2.6
2,911,588 + PGA1_c27930 0.49 +0.4
2,911,588 + PGA1_c27930 0.49 +0.6
2,911,588 + PGA1_c27930 0.49 +0.4
2,911,596 - PGA1_c27930 0.50 +0.2
2,911,606 - PGA1_c27930 0.51 -1.6
2,911,643 + PGA1_c27930 0.54 +0.8
2,911,644 + PGA1_c27930 0.54 -1.0
2,911,691 + PGA1_c27930 0.58 -0.9
2,911,692 + PGA1_c27930 0.58 +0.5
2,911,697 + PGA1_c27930 0.58 +1.3
2,911,700 - PGA1_c27930 0.58 -0.5
2,911,725 + PGA1_c27930 0.60 +0.1
2,911,849 + PGA1_c27930 0.70 +0.1
2,911,877 + PGA1_c27930 0.72 -1.1

Or see this region's nucleotide sequence