Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2684 and HP15_2685 are separated by 31 nucleotides HP15_2685 and HP15_2686 overlap by 4 nucleotides HP15_2686 and HP15_2687 overlap by 11 nucleotides HP15_2687 and HP15_2688 are separated by 38 nucleotides
HP15_2684: HP15_2684 - TRAP-type C4-dicarboxylate transport system, large permease component, at 2,831,671 to 2,832,978
_2684
HP15_2685: HP15_2685 - UPF0271 protein, LamB/YcsF family, at 2,833,010 to 2,833,744
_2685
HP15_2686: HP15_2686 - allophanate hydrolase subunit 1, at 2,833,741 to 2,834,433
_2686
HP15_2687: HP15_2687 - urea amidolyase related protein, at 2,834,423 to 2,835,361
_2687
HP15_2688: HP15_2688 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) , at 2,835,400 to 2,839,029
_2688
Position (kb)
2833
2834
2835 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2832.791 kb on + strand, within HP15_2684 at 2832.809 kb on - strand, within HP15_2684 at 2832.826 kb on - strand, within HP15_2684 at 2832.858 kb on - strand at 2833.008 kb on - strand at 2833.141 kb on - strand, within HP15_2685 at 2833.197 kb on + strand, within HP15_2685 at 2833.205 kb on - strand, within HP15_2685 at 2833.249 kb on + strand, within HP15_2685 at 2833.489 kb on + strand, within HP15_2685 at 2833.584 kb on + strand, within HP15_2685 at 2833.652 kb on - strand, within HP15_2685 at 2833.889 kb on + strand, within HP15_2686 at 2833.889 kb on + strand, within HP15_2686 at 2833.894 kb on + strand, within HP15_2686 at 2833.940 kb on + strand, within HP15_2686 at 2834.049 kb on - strand, within HP15_2686 at 2834.124 kb on + strand, within HP15_2686 at 2834.176 kb on - strand, within HP15_2686 at 2834.355 kb on + strand, within HP15_2686 at 2834.526 kb on + strand, within HP15_2687 at 2834.601 kb on + strand, within HP15_2687 at 2834.713 kb on + strand, within HP15_2687 at 2834.778 kb on + strand, within HP15_2687 at 2834.877 kb on - strand, within HP15_2687 at 2835.309 kb on + strand at 2835.351 kb on + strand at 2835.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,832,791 + HP15_2684 0.86 +2.2 2,832,809 - HP15_2684 0.87 -0.5 2,832,826 - HP15_2684 0.88 +2.2 2,832,858 - -0.1 2,833,008 - -0.6 2,833,141 - HP15_2685 0.18 -1.8 2,833,197 + HP15_2685 0.25 -2.5 2,833,205 - HP15_2685 0.27 -3.0 2,833,249 + HP15_2685 0.33 -3.3 2,833,489 + HP15_2685 0.65 -3.8 2,833,584 + HP15_2685 0.78 -2.5 2,833,652 - HP15_2685 0.87 -1.2 2,833,889 + HP15_2686 0.21 -1.4 2,833,889 + HP15_2686 0.21 -2.5 2,833,894 + HP15_2686 0.22 -2.0 2,833,940 + HP15_2686 0.29 -0.2 2,834,049 - HP15_2686 0.44 -2.5 2,834,124 + HP15_2686 0.55 -1.2 2,834,176 - HP15_2686 0.63 -3.0 2,834,355 + HP15_2686 0.89 -0.8 2,834,526 + HP15_2687 0.11 -2.8 2,834,601 + HP15_2687 0.19 -1.2 2,834,713 + HP15_2687 0.31 -1.0 2,834,778 + HP15_2687 0.38 -2.4 2,834,877 - HP15_2687 0.48 -1.5 2,835,309 + -2.3 2,835,351 + -0.1 2,835,359 - -0.0
Or see this region's nucleotide sequence