Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c27490 and PGA1_c27500 are separated by 109 nucleotides PGA1_c27500 and PGA1_c27510 overlap by 4 nucleotides PGA1_c27510 and PGA1_c27520 are separated by 147 nucleotides
PGA1_c27490: PGA1_c27490 - glyceraldehyde-3-phosphate dehydrogenase Gap, at 2,864,515 to 2,865,522
_c27490
PGA1_c27500: PGA1_c27500 - transcriptional activator ChrR, at 2,865,632 to 2,866,267
_c27500
PGA1_c27510: PGA1_c27510 - 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)', at 2,866,264 to 2,866,914
_c27510
PGA1_c27520: PGA1_c27520 - amine oxidoreductase-like protein, at 2,867,062 to 2,868,351
_c27520
Position (kb)
2866
2867 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2865.507 kb on + strand at 2865.562 kb on + strand at 2865.563 kb on + strand at 2865.563 kb on + strand at 2865.563 kb on + strand at 2865.571 kb on - strand at 2865.571 kb on - strand at 2865.597 kb on + strand at 2865.608 kb on + strand at 2865.620 kb on + strand at 2865.620 kb on + strand at 2865.620 kb on + strand at 2865.620 kb on + strand at 2865.628 kb on - strand at 2865.628 kb on - strand at 2865.628 kb on - strand at 2865.677 kb on + strand at 2865.711 kb on + strand, within PGA1_c27500 at 2865.889 kb on + strand, within PGA1_c27500 at 2865.889 kb on + strand, within PGA1_c27500 at 2865.934 kb on + strand, within PGA1_c27500 at 2866.046 kb on - strand, within PGA1_c27500 at 2866.302 kb on + strand at 2866.307 kb on + strand at 2866.310 kb on - strand at 2866.315 kb on - strand at 2866.315 kb on - strand at 2866.315 kb on - strand at 2866.375 kb on + strand, within PGA1_c27510 at 2866.383 kb on - strand, within PGA1_c27510 at 2866.396 kb on - strand, within PGA1_c27510 at 2866.429 kb on - strand, within PGA1_c27510 at 2866.432 kb on + strand, within PGA1_c27510 at 2866.449 kb on + strand, within PGA1_c27510 at 2866.449 kb on + strand, within PGA1_c27510 at 2866.449 kb on + strand, within PGA1_c27510 at 2866.449 kb on + strand, within PGA1_c27510 at 2866.457 kb on - strand, within PGA1_c27510 at 2866.457 kb on - strand, within PGA1_c27510 at 2866.457 kb on - strand, within PGA1_c27510 at 2866.457 kb on - strand, within PGA1_c27510 at 2866.519 kb on - strand, within PGA1_c27510 at 2866.567 kb on + strand, within PGA1_c27510 at 2866.655 kb on - strand, within PGA1_c27510 at 2866.662 kb on - strand, within PGA1_c27510 at 2866.675 kb on - strand, within PGA1_c27510 at 2866.709 kb on + strand, within PGA1_c27510 at 2866.709 kb on + strand, within PGA1_c27510 at 2866.709 kb on + strand, within PGA1_c27510 at 2866.709 kb on + strand, within PGA1_c27510 at 2866.717 kb on - strand, within PGA1_c27510 at 2866.717 kb on - strand, within PGA1_c27510 at 2866.717 kb on - strand, within PGA1_c27510 at 2866.717 kb on - strand, within PGA1_c27510 at 2866.718 kb on - strand, within PGA1_c27510 at 2866.722 kb on + strand, within PGA1_c27510 at 2866.730 kb on - strand, within PGA1_c27510 at 2866.780 kb on - strand, within PGA1_c27510 at 2866.800 kb on - strand, within PGA1_c27510 at 2866.800 kb on - strand, within PGA1_c27510 at 2866.847 kb on - strand, within PGA1_c27510 at 2866.859 kb on + strand at 2866.867 kb on - strand at 2866.870 kb on - strand at 2866.880 kb on - strand at 2866.892 kb on + strand at 2866.897 kb on + strand at 2866.902 kb on + strand at 2866.905 kb on - strand at 2866.905 kb on - strand at 2866.905 kb on - strand at 2866.907 kb on + strand at 2866.907 kb on + strand at 2866.911 kb on + strand at 2866.912 kb on + strand at 2866.912 kb on + strand at 2866.914 kb on + strand at 2866.919 kb on - strand at 2866.920 kb on - strand at 2866.920 kb on - strand at 2866.943 kb on + strand at 2866.951 kb on - strand at 2866.951 kb on - strand at 2866.992 kb on - strand at 2867.012 kb on - strand at 2867.019 kb on + strand at 2867.019 kb on + strand at 2867.019 kb on + strand at 2867.019 kb on + strand at 2867.019 kb on + strand at 2867.019 kb on + strand at 2867.019 kb on + strand at 2867.019 kb on + strand at 2867.019 kb on + strand at 2867.019 kb on + strand at 2867.019 kb on + strand at 2867.021 kb on - strand at 2867.027 kb on - strand at 2867.027 kb on - strand at 2867.027 kb on - strand at 2867.027 kb on - strand at 2867.027 kb on - strand at 2867.027 kb on - strand at 2867.027 kb on - strand at 2867.027 kb on - strand at 2867.027 kb on - strand at 2867.027 kb on - strand at 2867.058 kb on + strand at 2867.058 kb on - strand at 2867.058 kb on - strand at 2867.066 kb on - strand at 2867.104 kb on - strand at 2867.121 kb on - strand at 2867.137 kb on + strand at 2867.162 kb on + strand at 2867.162 kb on + strand at 2867.170 kb on - strand at 2867.172 kb on + strand at 2867.180 kb on - strand at 2867.180 kb on - strand at 2867.191 kb on - strand, within PGA1_c27520 at 2867.202 kb on + strand, within PGA1_c27520 at 2867.205 kb on - strand, within PGA1_c27520 at 2867.210 kb on - strand, within PGA1_c27520 at 2867.210 kb on - strand, within PGA1_c27520 at 2867.225 kb on + strand, within PGA1_c27520 at 2867.241 kb on + strand, within PGA1_c27520 at 2867.251 kb on + strand, within PGA1_c27520 at 2867.268 kb on - strand, within PGA1_c27520 at 2867.268 kb on - strand, within PGA1_c27520 at 2867.279 kb on + strand, within PGA1_c27520 at 2867.314 kb on - strand, within PGA1_c27520 at 2867.321 kb on - strand, within PGA1_c27520 at 2867.323 kb on + strand, within PGA1_c27520 at 2867.331 kb on - strand, within PGA1_c27520 at 2867.387 kb on + strand, within PGA1_c27520 at 2867.395 kb on - strand, within PGA1_c27520 at 2867.403 kb on + strand, within PGA1_c27520 at 2867.446 kb on + strand, within PGA1_c27520 at 2867.476 kb on + strand, within PGA1_c27520 at 2867.476 kb on + strand, within PGA1_c27520 at 2867.528 kb on - strand, within PGA1_c27520 at 2867.596 kb on - strand, within PGA1_c27520 at 2867.596 kb on - strand, within PGA1_c27520 at 2867.596 kb on - strand, within PGA1_c27520 at 2867.596 kb on - strand, within PGA1_c27520 at 2867.610 kb on - strand, within PGA1_c27520 at 2867.624 kb on + strand, within PGA1_c27520 at 2867.664 kb on - strand, within PGA1_c27520 at 2867.669 kb on - strand, within PGA1_c27520 at 2867.674 kb on + strand, within PGA1_c27520 at 2867.677 kb on - strand, within PGA1_c27520 at 2867.682 kb on - strand, within PGA1_c27520 at 2867.690 kb on - strand, within PGA1_c27520 at 2867.695 kb on + strand, within PGA1_c27520 at 2867.776 kb on + strand, within PGA1_c27520 at 2867.786 kb on + strand, within PGA1_c27520 at 2867.806 kb on + strand, within PGA1_c27520 at 2867.853 kb on + strand, within PGA1_c27520 at 2867.878 kb on - strand, within PGA1_c27520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 2,865,507 + +0.7 2,865,562 + -1.1 2,865,563 + -0.6 2,865,563 + +0.2 2,865,563 + -0.3 2,865,571 - -1.1 2,865,571 - +0.2 2,865,597 + -0.7 2,865,608 + -0.6 2,865,620 + +0.2 2,865,620 + +1.5 2,865,620 + +0.5 2,865,620 + -0.2 2,865,628 - -0.5 2,865,628 - +0.7 2,865,628 - -0.6 2,865,677 + +0.9 2,865,711 + PGA1_c27500 0.12 -0.7 2,865,889 + PGA1_c27500 0.40 -0.9 2,865,889 + PGA1_c27500 0.40 -2.0 2,865,934 + PGA1_c27500 0.47 -1.6 2,866,046 - PGA1_c27500 0.65 -3.0 2,866,302 + +0.2 2,866,307 + -0.2 2,866,310 - -0.8 2,866,315 - -0.7 2,866,315 - -0.6 2,866,315 - +0.1 2,866,375 + PGA1_c27510 0.17 +2.0 2,866,383 - PGA1_c27510 0.18 +0.0 2,866,396 - PGA1_c27510 0.20 +1.2 2,866,429 - PGA1_c27510 0.25 +0.4 2,866,432 + PGA1_c27510 0.26 -0.6 2,866,449 + PGA1_c27510 0.28 -0.7 2,866,449 + PGA1_c27510 0.28 +0.6 2,866,449 + PGA1_c27510 0.28 +0.7 2,866,449 + PGA1_c27510 0.28 -0.5 2,866,457 - PGA1_c27510 0.30 -0.0 2,866,457 - PGA1_c27510 0.30 +0.4 2,866,457 - PGA1_c27510 0.30 +0.1 2,866,457 - PGA1_c27510 0.30 -0.4 2,866,519 - PGA1_c27510 0.39 +1.3 2,866,567 + PGA1_c27510 0.47 -0.5 2,866,655 - PGA1_c27510 0.60 -0.7 2,866,662 - PGA1_c27510 0.61 +0.2 2,866,675 - PGA1_c27510 0.63 +0.2 2,866,709 + PGA1_c27510 0.68 +0.4 2,866,709 + PGA1_c27510 0.68 +0.3 2,866,709 + PGA1_c27510 0.68 +0.3 2,866,709 + PGA1_c27510 0.68 -2.1 2,866,717 - PGA1_c27510 0.70 +1.2 2,866,717 - PGA1_c27510 0.70 -0.3 2,866,717 - PGA1_c27510 0.70 -0.6 2,866,717 - PGA1_c27510 0.70 +1.1 2,866,718 - PGA1_c27510 0.70 +0.2 2,866,722 + PGA1_c27510 0.70 +0.3 2,866,730 - PGA1_c27510 0.72 +0.4 2,866,780 - PGA1_c27510 0.79 +0.3 2,866,800 - PGA1_c27510 0.82 -0.1 2,866,800 - PGA1_c27510 0.82 -2.2 2,866,847 - PGA1_c27510 0.90 -0.3 2,866,859 + +0.6 2,866,867 - -0.4 2,866,870 - -1.6 2,866,880 - +0.4 2,866,892 + -0.9 2,866,897 + +0.6 2,866,902 + -1.9 2,866,905 - +0.3 2,866,905 - +0.6 2,866,905 - +0.0 2,866,907 + -0.2 2,866,907 + -1.4 2,866,911 + +0.4 2,866,912 + -1.7 2,866,912 + -1.0 2,866,914 + +1.3 2,866,919 - +0.7 2,866,920 - -0.4 2,866,920 - -0.2 2,866,943 + -0.3 2,866,951 - +0.4 2,866,951 - -0.2 2,866,992 - +0.7 2,867,012 - +0.9 2,867,019 + +2.0 2,867,019 + +0.6 2,867,019 + +0.9 2,867,019 + +1.1 2,867,019 + +1.3 2,867,019 + -0.5 2,867,019 + -0.2 2,867,019 + -0.9 2,867,019 + -0.6 2,867,019 + -0.0 2,867,019 + -0.6 2,867,021 - +0.0 2,867,027 - +1.1 2,867,027 - -0.0 2,867,027 - -0.1 2,867,027 - +0.3 2,867,027 - -1.1 2,867,027 - +1.1 2,867,027 - -0.5 2,867,027 - -0.3 2,867,027 - -0.2 2,867,027 - +1.6 2,867,058 + +1.6 2,867,058 - +0.1 2,867,058 - -0.6 2,867,066 - +1.5 2,867,104 - +0.2 2,867,121 - +0.4 2,867,137 + -0.3 2,867,162 + +0.9 2,867,162 + +0.3 2,867,170 - -0.9 2,867,172 + -0.6 2,867,180 - +0.1 2,867,180 - -0.1 2,867,191 - PGA1_c27520 0.10 -0.4 2,867,202 + PGA1_c27520 0.11 +0.0 2,867,205 - PGA1_c27520 0.11 -1.2 2,867,210 - PGA1_c27520 0.11 -0.7 2,867,210 - PGA1_c27520 0.11 -0.5 2,867,225 + PGA1_c27520 0.13 +0.5 2,867,241 + PGA1_c27520 0.14 -1.9 2,867,251 + PGA1_c27520 0.15 +0.0 2,867,268 - PGA1_c27520 0.16 -2.3 2,867,268 - PGA1_c27520 0.16 -0.2 2,867,279 + PGA1_c27520 0.17 +1.6 2,867,314 - PGA1_c27520 0.20 -1.3 2,867,321 - PGA1_c27520 0.20 +0.7 2,867,323 + PGA1_c27520 0.20 -0.5 2,867,331 - PGA1_c27520 0.21 +0.3 2,867,387 + PGA1_c27520 0.25 +0.7 2,867,395 - PGA1_c27520 0.26 -0.0 2,867,403 + PGA1_c27520 0.26 +2.0 2,867,446 + PGA1_c27520 0.30 +0.5 2,867,476 + PGA1_c27520 0.32 +0.6 2,867,476 + PGA1_c27520 0.32 -0.9 2,867,528 - PGA1_c27520 0.36 +0.3 2,867,596 - PGA1_c27520 0.41 -0.8 2,867,596 - PGA1_c27520 0.41 -2.2 2,867,596 - PGA1_c27520 0.41 -0.7 2,867,596 - PGA1_c27520 0.41 +0.1 2,867,610 - PGA1_c27520 0.42 -0.4 2,867,624 + PGA1_c27520 0.44 -0.0 2,867,664 - PGA1_c27520 0.47 +0.9 2,867,669 - PGA1_c27520 0.47 +0.0 2,867,674 + PGA1_c27520 0.47 -0.3 2,867,677 - PGA1_c27520 0.48 +0.1 2,867,682 - PGA1_c27520 0.48 +0.3 2,867,690 - PGA1_c27520 0.49 +0.5 2,867,695 + PGA1_c27520 0.49 -0.5 2,867,776 + PGA1_c27520 0.55 +0.7 2,867,786 + PGA1_c27520 0.56 -0.3 2,867,806 + PGA1_c27520 0.58 +1.1 2,867,853 + PGA1_c27520 0.61 +2.4 2,867,878 - PGA1_c27520 0.63 -0.0
Or see this region's nucleotide sequence