Strain Fitness in Marinobacter adhaerens HP15 around HP15_2649

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2647 and HP15_2648 are separated by 32 nucleotidesHP15_2648 and HP15_2649 overlap by 14 nucleotidesHP15_2649 and HP15_2650 overlap by 4 nucleotidesHP15_2650 and HP15_2651 are separated by 105 nucleotides HP15_2647: HP15_2647 - peptidoglycan-binding domain 1 protein, at 2,797,459 to 2,799,111 _2647 HP15_2648: HP15_2648 - conserved hypothetical protein, at 2,799,144 to 2,799,596 _2648 HP15_2649: HP15_2649 - alpha/beta hydrolase fold protein, at 2,799,583 to 2,800,518 _2649 HP15_2650: HP15_2650 - selenoprotein W-related protein, at 2,800,515 to 2,800,805 _2650 HP15_2651: HP15_2651 - NADH:flavin oxidoreductase/NADH oxidase, at 2,800,911 to 2,802,011 _2651 Position (kb) 2799 2800 2801Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2798.617 kb on - strand, within HP15_2647at 2798.633 kb on + strand, within HP15_2647at 2798.904 kb on + strand, within HP15_2647at 2798.991 kb on - strandat 2799.071 kb on - strandat 2799.130 kb on + strandat 2799.279 kb on - strand, within HP15_2648at 2799.399 kb on - strand, within HP15_2648at 2799.401 kb on + strand, within HP15_2648at 2799.460 kb on + strand, within HP15_2648at 2799.545 kb on - strand, within HP15_2648at 2799.545 kb on - strand, within HP15_2648at 2799.545 kb on - strand, within HP15_2648at 2799.552 kb on - strandat 2799.918 kb on - strand, within HP15_2649at 2799.924 kb on - strand, within HP15_2649at 2800.014 kb on + strand, within HP15_2649at 2800.022 kb on - strand, within HP15_2649at 2800.120 kb on - strand, within HP15_2649at 2800.212 kb on + strand, within HP15_2649at 2800.305 kb on - strand, within HP15_2649at 2800.600 kb on - strand, within HP15_2650at 2800.664 kb on + strand, within HP15_2650at 2800.765 kb on + strand, within HP15_2650at 2800.773 kb on - strand, within HP15_2650at 2800.829 kb on - strandat 2800.870 kb on + strandat 2800.918 kb on + strandat 2801.077 kb on - strand, within HP15_2651at 2801.101 kb on + strand, within HP15_2651at 2801.188 kb on - strand, within HP15_2651at 2801.234 kb on + strand, within HP15_2651at 2801.234 kb on + strand, within HP15_2651at 2801.234 kb on + strand, within HP15_2651at 2801.234 kb on + strand, within HP15_2651at 2801.442 kb on + strand, within HP15_2651at 2801.479 kb on + strand, within HP15_2651at 2801.479 kb on + strand, within HP15_2651

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,798,617 - HP15_2647 0.70 -0.3
2,798,633 + HP15_2647 0.71 +0.3
2,798,904 + HP15_2647 0.87 -1.2
2,798,991 - -0.8
2,799,071 - -1.5
2,799,130 + +0.3
2,799,279 - HP15_2648 0.30 +0.5
2,799,399 - HP15_2648 0.56 +0.2
2,799,401 + HP15_2648 0.57 +0.1
2,799,460 + HP15_2648 0.70 -0.2
2,799,545 - HP15_2648 0.89 +0.3
2,799,545 - HP15_2648 0.89 -0.4
2,799,545 - HP15_2648 0.89 -2.0
2,799,552 - +0.2
2,799,918 - HP15_2649 0.36 -0.5
2,799,924 - HP15_2649 0.36 -0.2
2,800,014 + HP15_2649 0.46 +0.2
2,800,022 - HP15_2649 0.47 -0.3
2,800,120 - HP15_2649 0.57 +0.1
2,800,212 + HP15_2649 0.67 +4.1
2,800,305 - HP15_2649 0.77 +0.3
2,800,600 - HP15_2650 0.29 -0.6
2,800,664 + HP15_2650 0.51 -0.5
2,800,765 + HP15_2650 0.86 -0.1
2,800,773 - HP15_2650 0.89 +0.3
2,800,829 - +0.2
2,800,870 + -0.2
2,800,918 + +0.0
2,801,077 - HP15_2651 0.15 +2.6
2,801,101 + HP15_2651 0.17 -0.1
2,801,188 - HP15_2651 0.25 -0.6
2,801,234 + HP15_2651 0.29 +1.4
2,801,234 + HP15_2651 0.29 -0.3
2,801,234 + HP15_2651 0.29 +0.2
2,801,234 + HP15_2651 0.29 -0.2
2,801,442 + HP15_2651 0.48 +0.6
2,801,479 + HP15_2651 0.52 -0.6
2,801,479 + HP15_2651 0.52 -0.1

Or see this region's nucleotide sequence