Strain Fitness in Marinobacter adhaerens HP15 around HP15_2583

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2581 and HP15_2582 overlap by 1 nucleotidesHP15_2582 and HP15_2583 overlap by 4 nucleotidesHP15_2583 and HP15_2584 overlap by 1 nucleotidesHP15_2584 and HP15_2585 overlap by 4 nucleotidesHP15_2585 and HP15_2586 are separated by 41 nucleotides HP15_2581: HP15_2581 - monovalent cation/H+ antiporter subunit A, at 2,730,699 to 2,733,500 _2581 HP15_2582: HP15_2582 - NADH-ubiquinone oxidoreductase, chain 4L, at 2,733,500 to 2,733,868 _2582 HP15_2583: HP15_2583 - monovalent cation/H+ antiporter subunit D, at 2,733,865 to 2,735,382 _2583 HP15_2584: HP15_2584 - pH adaption potassium efflux system protein PhaE, at 2,735,382 to 2,735,870 _2584 HP15_2585: HP15_2585 - multiple resistance and pH regulation protein F, at 2,735,867 to 2,736,136 _2585 HP15_2586: HP15_2586 - monovalent cation/H+ antiporter subunit G, at 2,736,178 to 2,736,510 _2586 Position (kb) 2733 2734 2735 2736Strain fitness (log2 ratio) -1 0 1 2at 2733.259 kb on + strandat 2733.259 kb on + strandat 2733.421 kb on + strandat 2733.448 kb on - strandat 2733.448 kb on - strandat 2733.459 kb on + strandat 2733.520 kb on + strandat 2733.672 kb on + strand, within HP15_2582at 2733.710 kb on + strand, within HP15_2582at 2733.720 kb on - strand, within HP15_2582at 2733.728 kb on - strand, within HP15_2582at 2733.922 kb on - strandat 2733.959 kb on + strandat 2734.328 kb on - strand, within HP15_2583at 2734.422 kb on + strand, within HP15_2583at 2734.525 kb on - strand, within HP15_2583at 2734.537 kb on + strand, within HP15_2583at 2734.555 kb on + strand, within HP15_2583at 2734.837 kb on - strand, within HP15_2583at 2735.055 kb on + strand, within HP15_2583at 2735.064 kb on - strand, within HP15_2583at 2735.074 kb on + strand, within HP15_2583at 2735.087 kb on + strand, within HP15_2583at 2735.118 kb on + strand, within HP15_2583at 2735.209 kb on - strand, within HP15_2583at 2735.319 kb on - strandat 2735.333 kb on - strandat 2735.364 kb on + strandat 2735.404 kb on + strandat 2735.419 kb on + strandat 2735.478 kb on + strand, within HP15_2584at 2735.564 kb on - strand, within HP15_2584at 2735.619 kb on - strand, within HP15_2584at 2735.676 kb on - strand, within HP15_2584at 2735.915 kb on - strand, within HP15_2585at 2735.984 kb on + strand, within HP15_2585at 2735.992 kb on - strand, within HP15_2585at 2736.011 kb on + strand, within HP15_2585at 2736.121 kb on - strandat 2736.131 kb on - strandat 2736.319 kb on - strand, within HP15_2586at 2736.321 kb on - strand, within HP15_2586at 2736.331 kb on + strand, within HP15_2586at 2736.367 kb on - strand, within HP15_2586

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,733,259 + +0.6
2,733,259 + +1.0
2,733,421 + +1.3
2,733,448 - +0.6
2,733,448 - +2.0
2,733,459 + +0.8
2,733,520 + +0.5
2,733,672 + HP15_2582 0.47 +1.2
2,733,710 + HP15_2582 0.57 +1.8
2,733,720 - HP15_2582 0.60 +2.1
2,733,728 - HP15_2582 0.62 +1.0
2,733,922 - -1.2
2,733,959 + +0.7
2,734,328 - HP15_2583 0.31 +2.2
2,734,422 + HP15_2583 0.37 +2.4
2,734,525 - HP15_2583 0.43 -0.0
2,734,537 + HP15_2583 0.44 +1.1
2,734,555 + HP15_2583 0.45 +1.0
2,734,837 - HP15_2583 0.64 +1.9
2,735,055 + HP15_2583 0.78 +1.1
2,735,064 - HP15_2583 0.79 +1.2
2,735,074 + HP15_2583 0.80 +1.2
2,735,087 + HP15_2583 0.81 +1.4
2,735,118 + HP15_2583 0.83 +2.3
2,735,209 - HP15_2583 0.89 +2.6
2,735,319 - +0.2
2,735,333 - +1.2
2,735,364 + +2.1
2,735,404 + +1.1
2,735,419 + +2.1
2,735,478 + HP15_2584 0.20 +1.1
2,735,564 - HP15_2584 0.37 +1.0
2,735,619 - HP15_2584 0.48 +1.6
2,735,676 - HP15_2584 0.60 -1.6
2,735,915 - HP15_2585 0.18 +1.9
2,735,984 + HP15_2585 0.43 +1.7
2,735,992 - HP15_2585 0.46 +0.6
2,736,011 + HP15_2585 0.53 +2.5
2,736,121 - +0.8
2,736,131 - +1.7
2,736,319 - HP15_2586 0.42 +1.1
2,736,321 - HP15_2586 0.43 +1.4
2,736,331 + HP15_2586 0.46 +0.4
2,736,367 - HP15_2586 0.57 -1.2

Or see this region's nucleotide sequence