Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c25940 and PGA1_c25950 are separated by 4 nucleotides PGA1_c25950 and PGA1_c25960 are separated by 9 nucleotides PGA1_c25960 and PGA1_c25970 overlap by 4 nucleotides
PGA1_c25940: PGA1_c25940 - putative integral membrane protein, at 2,703,189 to 2,704,199
_c25940
PGA1_c25950: PGA1_c25950 - putative biopolymer transport protein, at 2,704,204 to 2,704,581
_c25950
PGA1_c25960: PGA1_c25960 - putative biopolymer transport protein, at 2,704,591 to 2,704,968
_c25960
PGA1_c25970: PGA1_c25970 - tonB-like protein, at 2,704,965 to 2,705,828
_c25970
Position (kb)
2704
2705 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2703.726 kb on - strand, within PGA1_c25940 at 2703.764 kb on - strand, within PGA1_c25940 at 2703.786 kb on + strand, within PGA1_c25940 at 2703.793 kb on + strand, within PGA1_c25940 at 2703.810 kb on + strand, within PGA1_c25940 at 2703.883 kb on + strand, within PGA1_c25940 at 2703.891 kb on - strand, within PGA1_c25940 at 2703.916 kb on + strand, within PGA1_c25940 at 2703.927 kb on + strand, within PGA1_c25940 at 2703.948 kb on + strand, within PGA1_c25940 at 2703.961 kb on - strand, within PGA1_c25940 at 2703.992 kb on + strand, within PGA1_c25940 at 2704.000 kb on - strand, within PGA1_c25940 at 2704.038 kb on + strand at 2704.069 kb on - strand, within PGA1_c25940 at 2704.096 kb on + strand at 2704.104 kb on - strand at 2704.112 kb on - strand at 2704.129 kb on + strand at 2704.137 kb on - strand at 2704.194 kb on + strand at 2704.194 kb on + strand at 2704.197 kb on - strand at 2704.329 kb on - strand, within PGA1_c25950 at 2704.353 kb on + strand, within PGA1_c25950 at 2704.363 kb on + strand, within PGA1_c25950 at 2704.400 kb on - strand, within PGA1_c25950 at 2704.400 kb on - strand, within PGA1_c25950 at 2704.493 kb on + strand, within PGA1_c25950 at 2704.493 kb on + strand, within PGA1_c25950 at 2704.501 kb on - strand, within PGA1_c25950 at 2704.596 kb on - strand at 2704.644 kb on + strand, within PGA1_c25960 at 2704.692 kb on - strand, within PGA1_c25960 at 2704.700 kb on + strand, within PGA1_c25960 at 2704.700 kb on + strand, within PGA1_c25960 at 2704.708 kb on - strand, within PGA1_c25960 at 2704.708 kb on - strand, within PGA1_c25960 at 2704.708 kb on - strand, within PGA1_c25960 at 2704.775 kb on - strand, within PGA1_c25960 at 2704.789 kb on - strand, within PGA1_c25960 at 2704.856 kb on - strand, within PGA1_c25960 at 2704.889 kb on + strand, within PGA1_c25960 at 2704.925 kb on + strand, within PGA1_c25960 at 2704.975 kb on + strand at 2705.033 kb on - strand at 2705.153 kb on - strand, within PGA1_c25970 at 2705.173 kb on + strand, within PGA1_c25970 at 2705.173 kb on + strand, within PGA1_c25970 at 2705.191 kb on - strand, within PGA1_c25970 at 2705.211 kb on - strand, within PGA1_c25970 at 2705.245 kb on - strand, within PGA1_c25970 at 2705.265 kb on + strand, within PGA1_c25970 at 2705.287 kb on + strand, within PGA1_c25970 at 2705.451 kb on - strand, within PGA1_c25970 at 2705.512 kb on - strand, within PGA1_c25970 at 2705.528 kb on + strand, within PGA1_c25970 at 2705.528 kb on + strand, within PGA1_c25970 at 2705.529 kb on + strand, within PGA1_c25970 at 2705.612 kb on - strand, within PGA1_c25970 at 2705.767 kb on + strand at 2705.767 kb on + strand at 2705.797 kb on + strand at 2705.797 kb on + strand at 2705.804 kb on - strand at 2705.805 kb on - strand at 2705.805 kb on - strand at 2705.805 kb on - strand at 2705.805 kb on - strand at 2705.874 kb on - strand at 2705.874 kb on - strand at 2705.904 kb on - strand at 2705.904 kb on - strand at 2705.904 kb on - strand at 2705.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 2,703,726 - PGA1_c25940 0.53 +1.5 2,703,764 - PGA1_c25940 0.57 +0.9 2,703,786 + PGA1_c25940 0.59 +0.5 2,703,793 + PGA1_c25940 0.60 +0.2 2,703,810 + PGA1_c25940 0.61 -0.3 2,703,883 + PGA1_c25940 0.69 +0.7 2,703,891 - PGA1_c25940 0.69 +0.7 2,703,916 + PGA1_c25940 0.72 +0.0 2,703,927 + PGA1_c25940 0.73 +0.3 2,703,948 + PGA1_c25940 0.75 +0.3 2,703,961 - PGA1_c25940 0.76 +0.7 2,703,992 + PGA1_c25940 0.79 -0.3 2,704,000 - PGA1_c25940 0.80 -0.3 2,704,038 + -0.3 2,704,069 - PGA1_c25940 0.87 -1.8 2,704,096 + +1.3 2,704,104 - +0.3 2,704,112 - +0.2 2,704,129 + -0.5 2,704,137 - +0.3 2,704,194 + -0.5 2,704,194 + +0.5 2,704,197 - +0.1 2,704,329 - PGA1_c25950 0.33 -1.3 2,704,353 + PGA1_c25950 0.39 +0.8 2,704,363 + PGA1_c25950 0.42 -0.2 2,704,400 - PGA1_c25950 0.52 -0.1 2,704,400 - PGA1_c25950 0.52 -0.1 2,704,493 + PGA1_c25950 0.76 -0.0 2,704,493 + PGA1_c25950 0.76 +0.3 2,704,501 - PGA1_c25950 0.79 +1.0 2,704,596 - +0.6 2,704,644 + PGA1_c25960 0.14 +0.0 2,704,692 - PGA1_c25960 0.27 +1.0 2,704,700 + PGA1_c25960 0.29 +1.8 2,704,700 + PGA1_c25960 0.29 +0.5 2,704,708 - PGA1_c25960 0.31 -0.1 2,704,708 - PGA1_c25960 0.31 +0.9 2,704,708 - PGA1_c25960 0.31 -1.1 2,704,775 - PGA1_c25960 0.49 -0.3 2,704,789 - PGA1_c25960 0.52 -0.5 2,704,856 - PGA1_c25960 0.70 -0.3 2,704,889 + PGA1_c25960 0.79 +0.4 2,704,925 + PGA1_c25960 0.88 +0.5 2,704,975 + +0.6 2,705,033 - -0.6 2,705,153 - PGA1_c25970 0.22 +0.7 2,705,173 + PGA1_c25970 0.24 -0.8 2,705,173 + PGA1_c25970 0.24 +0.8 2,705,191 - PGA1_c25970 0.26 +0.0 2,705,211 - PGA1_c25970 0.28 -0.4 2,705,245 - PGA1_c25970 0.32 -0.3 2,705,265 + PGA1_c25970 0.35 -0.6 2,705,287 + PGA1_c25970 0.37 +1.3 2,705,451 - PGA1_c25970 0.56 +0.1 2,705,512 - PGA1_c25970 0.63 -1.0 2,705,528 + PGA1_c25970 0.65 +0.7 2,705,528 + PGA1_c25970 0.65 -2.1 2,705,529 + PGA1_c25970 0.65 +0.7 2,705,612 - PGA1_c25970 0.75 -0.3 2,705,767 + -0.1 2,705,767 + +1.3 2,705,797 + -0.7 2,705,797 + +0.2 2,705,804 - -0.4 2,705,805 - +0.5 2,705,805 - +0.2 2,705,805 - +0.1 2,705,805 - +1.4 2,705,874 - +0.7 2,705,874 - -0.1 2,705,904 - -0.5 2,705,904 - +0.2 2,705,904 - -0.2 2,705,906 - -1.4
Or see this region's nucleotide sequence