Strain Fitness in Marinobacter adhaerens HP15 around HP15_2375

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2374 and HP15_2375 are separated by 58 nucleotidesHP15_2375 and HP15_2376 are separated by 49 nucleotides HP15_2374: HP15_2374 - TPR repeat-containing protein, at 2,501,192 to 2,503,192 _2374 HP15_2375: HP15_2375 - exonuclease I, at 2,503,251 to 2,504,696 _2375 HP15_2376: HP15_2376 - conserved hypothetical protein, secreted, at 2,504,746 to 2,505,630 _2376 Position (kb) 2503 2504 2505Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2502.398 kb on - strand, within HP15_2374at 2502.565 kb on + strand, within HP15_2374at 2502.587 kb on + strand, within HP15_2374at 2502.639 kb on + strand, within HP15_2374at 2502.647 kb on - strand, within HP15_2374at 2502.654 kb on - strand, within HP15_2374at 2502.731 kb on - strand, within HP15_2374at 2502.957 kb on + strand, within HP15_2374at 2502.957 kb on + strand, within HP15_2374at 2503.004 kb on - strandat 2503.013 kb on + strandat 2503.134 kb on + strandat 2503.200 kb on + strandat 2504.691 kb on + strandat 2504.691 kb on + strandat 2504.699 kb on - strandat 2504.791 kb on + strandat 2504.799 kb on - strandat 2504.834 kb on + strandat 2504.875 kb on - strand, within HP15_2376at 2504.877 kb on + strand, within HP15_2376at 2504.885 kb on - strand, within HP15_2376at 2504.910 kb on - strand, within HP15_2376at 2504.985 kb on - strand, within HP15_2376at 2504.998 kb on + strand, within HP15_2376at 2504.998 kb on + strand, within HP15_2376at 2504.998 kb on + strand, within HP15_2376at 2504.998 kb on + strand, within HP15_2376at 2504.998 kb on + strand, within HP15_2376at 2504.998 kb on + strand, within HP15_2376at 2504.998 kb on + strand, within HP15_2376at 2505.006 kb on - strand, within HP15_2376at 2505.006 kb on - strand, within HP15_2376at 2505.006 kb on - strand, within HP15_2376at 2505.006 kb on - strand, within HP15_2376at 2505.188 kb on + strand, within HP15_2376at 2505.196 kb on - strand, within HP15_2376at 2505.196 kb on - strand, within HP15_2376at 2505.230 kb on + strand, within HP15_2376at 2505.232 kb on - strand, within HP15_2376at 2505.482 kb on + strand, within HP15_2376at 2505.584 kb on + strandat 2505.592 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
2,502,398 - HP15_2374 0.60 +0.2
2,502,565 + HP15_2374 0.69 -0.5
2,502,587 + HP15_2374 0.70 +1.4
2,502,639 + HP15_2374 0.72 +3.0
2,502,647 - HP15_2374 0.73 -0.2
2,502,654 - HP15_2374 0.73 +3.3
2,502,731 - HP15_2374 0.77 -0.0
2,502,957 + HP15_2374 0.88 -0.2
2,502,957 + HP15_2374 0.88 -0.2
2,503,004 - -0.1
2,503,013 + -1.6
2,503,134 + +0.4
2,503,200 + +0.7
2,504,691 + -3.3
2,504,691 + -4.9
2,504,699 - -1.9
2,504,791 + +0.6
2,504,799 - -0.2
2,504,834 + +0.5
2,504,875 - HP15_2376 0.15 +0.4
2,504,877 + HP15_2376 0.15 +0.7
2,504,885 - HP15_2376 0.16 -0.2
2,504,910 - HP15_2376 0.19 -0.8
2,504,985 - HP15_2376 0.27 +0.8
2,504,998 + HP15_2376 0.28 +0.2
2,504,998 + HP15_2376 0.28 -1.4
2,504,998 + HP15_2376 0.28 -0.4
2,504,998 + HP15_2376 0.28 +2.8
2,504,998 + HP15_2376 0.28 -0.2
2,504,998 + HP15_2376 0.28 +0.8
2,504,998 + HP15_2376 0.28 -0.2
2,505,006 - HP15_2376 0.29 -1.0
2,505,006 - HP15_2376 0.29 +0.5
2,505,006 - HP15_2376 0.29 +0.3
2,505,006 - HP15_2376 0.29 +0.1
2,505,188 + HP15_2376 0.50 +0.5
2,505,196 - HP15_2376 0.51 +0.9
2,505,196 - HP15_2376 0.51 -0.1
2,505,230 + HP15_2376 0.55 +0.3
2,505,232 - HP15_2376 0.55 -0.7
2,505,482 + HP15_2376 0.83 -0.2
2,505,584 + -0.2
2,505,592 - -0.4

Or see this region's nucleotide sequence