Strain Fitness in Marinobacter adhaerens HP15 around HP15_2355

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2354 and HP15_2355 are separated by 4 nucleotidesHP15_2355 and HP15_2356 overlap by 10 nucleotidesHP15_2356 and HP15_2357 are separated by 1 nucleotides HP15_2354: HP15_2354 - peptidase M48, Ste24p, at 2,478,169 to 2,480,166 _2354 HP15_2355: HP15_2355 - type II and III secretion system protein, at 2,480,171 to 2,482,162 _2355 HP15_2356: HP15_2356 - general secretion pathway protein C, at 2,482,153 to 2,483,004 _2356 HP15_2357: HP15_2357 - conserved hypothetical protein, at 2,483,006 to 2,483,797 _2357 Position (kb) 2480 2481 2482 2483Strain fitness (log2 ratio) -2 -1 0 1at 2479.178 kb on - strand, within HP15_2354at 2479.178 kb on - strand, within HP15_2354at 2479.182 kb on - strand, within HP15_2354at 2479.237 kb on - strand, within HP15_2354at 2479.237 kb on - strand, within HP15_2354at 2479.385 kb on - strand, within HP15_2354at 2479.456 kb on + strand, within HP15_2354at 2479.467 kb on + strand, within HP15_2354at 2479.467 kb on + strand, within HP15_2354at 2479.498 kb on - strand, within HP15_2354at 2479.543 kb on - strand, within HP15_2354at 2479.569 kb on - strand, within HP15_2354at 2479.639 kb on + strand, within HP15_2354at 2479.655 kb on + strand, within HP15_2354at 2479.655 kb on + strand, within HP15_2354at 2479.840 kb on + strand, within HP15_2354at 2479.858 kb on + strand, within HP15_2354at 2479.955 kb on + strand, within HP15_2354at 2480.010 kb on - strandat 2480.021 kb on + strandat 2480.021 kb on + strandat 2480.050 kb on + strandat 2480.057 kb on + strandat 2480.250 kb on + strandat 2480.626 kb on + strand, within HP15_2355at 2480.634 kb on - strand, within HP15_2355at 2480.710 kb on + strand, within HP15_2355at 2480.713 kb on - strand, within HP15_2355at 2480.732 kb on - strand, within HP15_2355at 2480.767 kb on + strand, within HP15_2355at 2480.767 kb on + strand, within HP15_2355at 2480.808 kb on + strand, within HP15_2355at 2480.866 kb on - strand, within HP15_2355at 2481.021 kb on + strand, within HP15_2355at 2481.266 kb on - strand, within HP15_2355at 2481.277 kb on + strand, within HP15_2355at 2481.403 kb on + strand, within HP15_2355at 2481.533 kb on - strand, within HP15_2355at 2481.705 kb on - strand, within HP15_2355at 2481.798 kb on - strand, within HP15_2355at 2481.813 kb on + strand, within HP15_2355at 2481.813 kb on + strand, within HP15_2355at 2481.821 kb on - strand, within HP15_2355at 2481.896 kb on + strand, within HP15_2355at 2481.929 kb on + strand, within HP15_2355at 2482.017 kb on - strandat 2482.098 kb on + strandat 2482.223 kb on + strandat 2482.264 kb on - strand, within HP15_2356at 2482.331 kb on + strand, within HP15_2356at 2482.331 kb on + strand, within HP15_2356at 2482.400 kb on - strand, within HP15_2356at 2482.499 kb on + strand, within HP15_2356at 2482.529 kb on + strand, within HP15_2356at 2482.617 kb on + strand, within HP15_2356at 2482.861 kb on + strand, within HP15_2356at 2482.988 kb on + strandat 2483.081 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
2,479,178 - HP15_2354 0.51 +0.1
2,479,178 - HP15_2354 0.51 +1.1
2,479,182 - HP15_2354 0.51 +0.4
2,479,237 - HP15_2354 0.53 +1.0
2,479,237 - HP15_2354 0.53 -0.5
2,479,385 - HP15_2354 0.61 +0.4
2,479,456 + HP15_2354 0.64 -0.8
2,479,467 + HP15_2354 0.65 -0.7
2,479,467 + HP15_2354 0.65 +1.3
2,479,498 - HP15_2354 0.67 -0.1
2,479,543 - HP15_2354 0.69 +0.4
2,479,569 - HP15_2354 0.70 +0.3
2,479,639 + HP15_2354 0.74 +0.1
2,479,655 + HP15_2354 0.74 +0.6
2,479,655 + HP15_2354 0.74 +0.2
2,479,840 + HP15_2354 0.84 +0.0
2,479,858 + HP15_2354 0.85 +0.9
2,479,955 + HP15_2354 0.89 -0.8
2,480,010 - +0.8
2,480,021 + +1.0
2,480,021 + -0.2
2,480,050 + +1.3
2,480,057 + +0.5
2,480,250 + -1.5
2,480,626 + HP15_2355 0.23 +0.4
2,480,634 - HP15_2355 0.23 +0.5
2,480,710 + HP15_2355 0.27 -1.2
2,480,713 - HP15_2355 0.27 +0.0
2,480,732 - HP15_2355 0.28 +1.2
2,480,767 + HP15_2355 0.30 -1.0
2,480,767 + HP15_2355 0.30 +0.2
2,480,808 + HP15_2355 0.32 -0.9
2,480,866 - HP15_2355 0.35 +0.2
2,481,021 + HP15_2355 0.43 -0.8
2,481,266 - HP15_2355 0.55 -1.4
2,481,277 + HP15_2355 0.56 -0.4
2,481,403 + HP15_2355 0.62 -1.2
2,481,533 - HP15_2355 0.68 +0.1
2,481,705 - HP15_2355 0.77 -1.6
2,481,798 - HP15_2355 0.82 -1.3
2,481,813 + HP15_2355 0.82 -2.1
2,481,813 + HP15_2355 0.82 -0.7
2,481,821 - HP15_2355 0.83 -1.9
2,481,896 + HP15_2355 0.87 -0.5
2,481,929 + HP15_2355 0.88 -0.6
2,482,017 - -2.7
2,482,098 + -0.9
2,482,223 + -0.4
2,482,264 - HP15_2356 0.13 +0.1
2,482,331 + HP15_2356 0.21 -0.5
2,482,331 + HP15_2356 0.21 -0.5
2,482,400 - HP15_2356 0.29 -1.3
2,482,499 + HP15_2356 0.41 -0.8
2,482,529 + HP15_2356 0.44 -0.1
2,482,617 + HP15_2356 0.54 -0.6
2,482,861 + HP15_2356 0.83 -0.2
2,482,988 + -0.3
2,483,081 - -0.5

Or see this region's nucleotide sequence