Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2345 and HP15_tRNA45 are separated by 41 nucleotides HP15_tRNA45 and HP15_tRNA46 are separated by 18 nucleotides HP15_tRNA46 and HP15_tRNA47 are separated by 67 nucleotides HP15_tRNA47 and HP15_2346 are separated by 161 nucleotides HP15_2346 and HP15_2347 are separated by 26 nucleotides HP15_2347 and HP15_2348 are separated by 139 nucleotides
HP15_2345: HP15_2345 - 3-oxoacyl-(acyl-carrier protein) reductase, at 2,468,405 to 2,469,811
_2345
HP15_tRNA45: HP15_tRNA45 - tRNA-Val, at 2,469,853 to 2,469,928
_tRNA45
HP15_tRNA46: HP15_tRNA46 - tRNA-Asp, at 2,469,947 to 2,470,023
_tRNA46
HP15_tRNA47: HP15_tRNA47 - tRNA-Val, at 2,470,091 to 2,470,166
_tRNA47
HP15_2346: HP15_2346 - conserved hypothetical protein, at 2,470,328 to 2,470,609
_2346
HP15_2347: HP15_2347 - conserved hypothetical protein, at 2,470,636 to 2,471,508
_2347
HP15_2348: HP15_2348 - conserved hypothetical protein, at 2,471,648 to 2,472,628
_2348
Position (kb)
2470
2471
2472 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2469.653 kb on + strand, within HP15_2345 at 2469.687 kb on + strand at 2469.699 kb on - strand at 2470.377 kb on + strand, within HP15_2346 at 2470.923 kb on + strand, within HP15_2347 at 2471.124 kb on + strand, within HP15_2347 at 2471.132 kb on - strand, within HP15_2347 at 2471.138 kb on - strand, within HP15_2347 at 2471.149 kb on + strand, within HP15_2347 at 2471.157 kb on - strand, within HP15_2347 at 2471.173 kb on - strand, within HP15_2347 at 2471.198 kb on - strand, within HP15_2347 at 2471.198 kb on - strand, within HP15_2347 at 2471.314 kb on + strand, within HP15_2347 at 2471.314 kb on + strand, within HP15_2347 at 2471.322 kb on - strand, within HP15_2347 at 2471.322 kb on - strand, within HP15_2347 at 2471.331 kb on + strand, within HP15_2347 at 2471.493 kb on + strand at 2471.555 kb on - strand at 2471.583 kb on - strand at 2471.644 kb on - strand at 2471.663 kb on - strand at 2471.712 kb on - strand at 2471.740 kb on + strand at 2471.760 kb on - strand, within HP15_2348 at 2472.036 kb on + strand, within HP15_2348 at 2472.044 kb on + strand, within HP15_2348 at 2472.164 kb on + strand, within HP15_2348
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,469,653 + HP15_2345 0.89 +0.7 2,469,687 + +0.4 2,469,699 - -0.6 2,470,377 + HP15_2346 0.17 -0.6 2,470,923 + HP15_2347 0.33 +0.2 2,471,124 + HP15_2347 0.56 -0.3 2,471,132 - HP15_2347 0.57 -0.8 2,471,138 - HP15_2347 0.58 +0.1 2,471,149 + HP15_2347 0.59 +0.1 2,471,157 - HP15_2347 0.60 -0.7 2,471,173 - HP15_2347 0.62 -0.6 2,471,198 - HP15_2347 0.64 -0.2 2,471,198 - HP15_2347 0.64 -0.3 2,471,314 + HP15_2347 0.78 +0.5 2,471,314 + HP15_2347 0.78 +0.0 2,471,322 - HP15_2347 0.79 -0.5 2,471,322 - HP15_2347 0.79 +1.8 2,471,331 + HP15_2347 0.80 +1.8 2,471,493 + +0.2 2,471,555 - +0.3 2,471,583 - +0.2 2,471,644 - -0.4 2,471,663 - -0.6 2,471,712 - -0.5 2,471,740 + +0.1 2,471,760 - HP15_2348 0.11 +0.3 2,472,036 + HP15_2348 0.40 +0.1 2,472,044 + HP15_2348 0.40 +0.7 2,472,164 + HP15_2348 0.53 +2.8
Or see this region's nucleotide sequence