Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24220

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24210 and PGA1_c24220 are separated by 104 nucleotidesPGA1_c24220 and PGA1_c24230 are separated by 110 nucleotides PGA1_c24210: PGA1_c24210 - putative phosphate transporter, at 2,525,591 to 2,527,072 _c24210 PGA1_c24220: PGA1_c24220 - ornithine carbamoyltransferase ArgF, at 2,527,177 to 2,528,103 _c24220 PGA1_c24230: PGA1_c24230 - acetylornithine aminotransferase ArgD, at 2,528,214 to 2,529,398 _c24230 Position (kb) 2527 2528 2529Strain fitness (log2 ratio) -1 0 1 2 3at 2526.341 kb on - strand, within PGA1_c24210at 2526.361 kb on - strand, within PGA1_c24210at 2526.402 kb on + strand, within PGA1_c24210at 2526.402 kb on - strand, within PGA1_c24210at 2526.405 kb on - strand, within PGA1_c24210at 2526.429 kb on - strand, within PGA1_c24210at 2526.445 kb on + strand, within PGA1_c24210at 2526.445 kb on + strand, within PGA1_c24210at 2526.465 kb on - strand, within PGA1_c24210at 2526.502 kb on - strand, within PGA1_c24210at 2526.507 kb on - strand, within PGA1_c24210at 2526.527 kb on - strand, within PGA1_c24210at 2526.560 kb on - strand, within PGA1_c24210at 2526.562 kb on + strand, within PGA1_c24210at 2526.629 kb on - strand, within PGA1_c24210at 2526.645 kb on + strand, within PGA1_c24210at 2526.685 kb on + strand, within PGA1_c24210at 2526.742 kb on + strand, within PGA1_c24210at 2526.744 kb on - strand, within PGA1_c24210at 2526.801 kb on + strand, within PGA1_c24210at 2526.809 kb on - strand, within PGA1_c24210at 2526.809 kb on - strand, within PGA1_c24210at 2526.865 kb on - strand, within PGA1_c24210at 2526.865 kb on - strand, within PGA1_c24210at 2526.911 kb on - strand, within PGA1_c24210at 2526.921 kb on - strand, within PGA1_c24210at 2527.025 kb on - strandat 2527.042 kb on - strandat 2527.091 kb on + strandat 2527.165 kb on + strandat 2527.170 kb on + strandat 2527.400 kb on - strand, within PGA1_c24220at 2527.561 kb on - strand, within PGA1_c24220at 2527.662 kb on + strand, within PGA1_c24220at 2527.670 kb on - strand, within PGA1_c24220at 2527.845 kb on - strand, within PGA1_c24220at 2528.008 kb on - strand, within PGA1_c24220at 2528.008 kb on - strand, within PGA1_c24220at 2528.025 kb on + strandat 2528.043 kb on + strandat 2528.069 kb on - strandat 2528.224 kb on + strandat 2528.242 kb on - strandat 2528.250 kb on - strandat 2528.303 kb on - strandat 2528.409 kb on + strand, within PGA1_c24230at 2528.414 kb on + strand, within PGA1_c24230at 2528.414 kb on + strand, within PGA1_c24230at 2528.417 kb on - strand, within PGA1_c24230at 2528.422 kb on - strand, within PGA1_c24230at 2528.422 kb on - strand, within PGA1_c24230at 2528.422 kb on - strand, within PGA1_c24230at 2528.422 kb on - strand, within PGA1_c24230at 2528.427 kb on - strand, within PGA1_c24230at 2528.457 kb on + strand, within PGA1_c24230at 2528.553 kb on - strand, within PGA1_c24230at 2528.558 kb on - strand, within PGA1_c24230at 2528.560 kb on - strand, within PGA1_c24230at 2528.570 kb on - strand, within PGA1_c24230at 2528.570 kb on - strand, within PGA1_c24230at 2528.570 kb on - strand, within PGA1_c24230at 2528.570 kb on - strand, within PGA1_c24230at 2528.596 kb on - strand, within PGA1_c24230at 2528.609 kb on + strand, within PGA1_c24230at 2528.740 kb on + strand, within PGA1_c24230at 2528.793 kb on - strand, within PGA1_c24230at 2528.803 kb on + strand, within PGA1_c24230at 2528.902 kb on - strand, within PGA1_c24230at 2528.902 kb on - strand, within PGA1_c24230at 2528.902 kb on - strand, within PGA1_c24230at 2528.919 kb on + strand, within PGA1_c24230at 2528.984 kb on + strand, within PGA1_c24230at 2529.057 kb on - strand, within PGA1_c24230

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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2,526,341 - PGA1_c24210 0.51 +0.9
2,526,361 - PGA1_c24210 0.52 -0.1
2,526,402 + PGA1_c24210 0.55 -0.1
2,526,402 - PGA1_c24210 0.55 -0.2
2,526,405 - PGA1_c24210 0.55 +0.4
2,526,429 - PGA1_c24210 0.57 +1.3
2,526,445 + PGA1_c24210 0.58 -0.6
2,526,445 + PGA1_c24210 0.58 +1.1
2,526,465 - PGA1_c24210 0.59 +0.6
2,526,502 - PGA1_c24210 0.61 +0.2
2,526,507 - PGA1_c24210 0.62 +0.4
2,526,527 - PGA1_c24210 0.63 -0.9
2,526,560 - PGA1_c24210 0.65 +0.6
2,526,562 + PGA1_c24210 0.66 -1.2
2,526,629 - PGA1_c24210 0.70 -0.1
2,526,645 + PGA1_c24210 0.71 -0.9
2,526,685 + PGA1_c24210 0.74 -0.1
2,526,742 + PGA1_c24210 0.78 +1.5
2,526,744 - PGA1_c24210 0.78 +0.3
2,526,801 + PGA1_c24210 0.82 -1.0
2,526,809 - PGA1_c24210 0.82 +0.2
2,526,809 - PGA1_c24210 0.82 -0.2
2,526,865 - PGA1_c24210 0.86 +0.8
2,526,865 - PGA1_c24210 0.86 +2.3
2,526,911 - PGA1_c24210 0.89 +0.7
2,526,921 - PGA1_c24210 0.90 +0.0
2,527,025 - -0.5
2,527,042 - +0.1
2,527,091 + -0.1
2,527,165 + +1.5
2,527,170 + -0.2
2,527,400 - PGA1_c24220 0.24 +1.8
2,527,561 - PGA1_c24220 0.41 +0.3
2,527,662 + PGA1_c24220 0.52 +1.1
2,527,670 - PGA1_c24220 0.53 +1.6
2,527,845 - PGA1_c24220 0.72 +2.6
2,528,008 - PGA1_c24220 0.90 +0.6
2,528,008 - PGA1_c24220 0.90 +2.2
2,528,025 + +1.9
2,528,043 + -0.9
2,528,069 - +1.2
2,528,224 + +0.5
2,528,242 - -1.1
2,528,250 - +0.9
2,528,303 - +2.6
2,528,409 + PGA1_c24230 0.16 -0.9
2,528,414 + PGA1_c24230 0.17 +1.6
2,528,414 + PGA1_c24230 0.17 +0.8
2,528,417 - PGA1_c24230 0.17 +1.1
2,528,422 - PGA1_c24230 0.18 +1.2
2,528,422 - PGA1_c24230 0.18 +1.2
2,528,422 - PGA1_c24230 0.18 -0.9
2,528,422 - PGA1_c24230 0.18 +3.0
2,528,427 - PGA1_c24230 0.18 +2.1
2,528,457 + PGA1_c24230 0.21 -1.1
2,528,553 - PGA1_c24230 0.29 +0.4
2,528,558 - PGA1_c24230 0.29 +1.0
2,528,560 - PGA1_c24230 0.29 -0.4
2,528,570 - PGA1_c24230 0.30 +3.0
2,528,570 - PGA1_c24230 0.30 +0.6
2,528,570 - PGA1_c24230 0.30 +3.2
2,528,570 - PGA1_c24230 0.30 +2.1
2,528,596 - PGA1_c24230 0.32 +1.6
2,528,609 + PGA1_c24230 0.33 +1.8
2,528,740 + PGA1_c24230 0.44 +2.3
2,528,793 - PGA1_c24230 0.49 +1.0
2,528,803 + PGA1_c24230 0.50 +1.3
2,528,902 - PGA1_c24230 0.58 +0.4
2,528,902 - PGA1_c24230 0.58 +0.8
2,528,902 - PGA1_c24230 0.58 -0.9
2,528,919 + PGA1_c24230 0.59 +2.2
2,528,984 + PGA1_c24230 0.65 +1.1
2,529,057 - PGA1_c24230 0.71 +1.6

Or see this region's nucleotide sequence