Strain Fitness in Marinobacter adhaerens HP15 around HP15_226

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_224 and HP15_225 overlap by 4 nucleotidesHP15_225 and HP15_226 are separated by 46 nucleotidesHP15_226 and HP15_228 are separated by 6 nucleotides HP15_224: HP15_224 - conserved hypothetical protein, secreted, at 210,187 to 210,573 _224 HP15_225: HP15_225 - conserved hypothetical protein, at 210,570 to 211,127 _225 HP15_226: HP15_226 - ABC transporter ATP-binding protein-like protein, at 211,174 to 213,117 _226 HP15_228: HP15_228 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 213,124 to 214,566 _228 Position (kb) 211 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2 3at 210.238 kb on + strand, within HP15_224at 210.345 kb on + strand, within HP15_224at 210.345 kb on + strand, within HP15_224at 210.350 kb on + strand, within HP15_224at 210.464 kb on - strand, within HP15_224at 210.486 kb on + strand, within HP15_224at 210.494 kb on - strand, within HP15_224at 210.494 kb on - strand, within HP15_224at 210.650 kb on - strand, within HP15_225at 210.727 kb on - strand, within HP15_225at 210.758 kb on - strand, within HP15_225at 210.817 kb on - strand, within HP15_225at 210.821 kb on + strand, within HP15_225at 210.831 kb on + strand, within HP15_225at 210.866 kb on + strand, within HP15_225at 210.895 kb on - strand, within HP15_225at 210.918 kb on + strand, within HP15_225at 210.940 kb on - strand, within HP15_225at 210.999 kb on + strand, within HP15_225at 210.999 kb on + strand, within HP15_225at 210.999 kb on + strand, within HP15_225at 211.026 kb on + strand, within HP15_225at 211.048 kb on + strand, within HP15_225at 211.135 kb on + strandat 211.143 kb on + strandat 211.251 kb on - strandat 211.323 kb on + strandat 211.328 kb on + strandat 211.328 kb on + strandat 211.397 kb on + strand, within HP15_226at 211.528 kb on - strand, within HP15_226at 211.567 kb on + strand, within HP15_226at 211.651 kb on - strand, within HP15_226at 211.657 kb on - strand, within HP15_226at 211.709 kb on + strand, within HP15_226at 211.841 kb on + strand, within HP15_226at 211.879 kb on + strand, within HP15_226at 211.968 kb on + strand, within HP15_226at 211.968 kb on + strand, within HP15_226at 211.976 kb on - strand, within HP15_226at 211.982 kb on - strand, within HP15_226at 211.988 kb on - strand, within HP15_226at 211.999 kb on + strand, within HP15_226at 212.025 kb on - strand, within HP15_226at 212.046 kb on + strand, within HP15_226at 212.049 kb on - strand, within HP15_226at 212.086 kb on + strand, within HP15_226at 212.093 kb on - strand, within HP15_226at 212.162 kb on + strand, within HP15_226at 212.162 kb on + strand, within HP15_226at 212.162 kb on + strand, within HP15_226at 212.162 kb on + strand, within HP15_226at 212.162 kb on + strand, within HP15_226at 212.170 kb on - strand, within HP15_226at 212.170 kb on - strand, within HP15_226at 212.170 kb on - strand, within HP15_226at 212.170 kb on - strand, within HP15_226at 212.202 kb on + strand, within HP15_226at 212.216 kb on - strand, within HP15_226at 212.224 kb on - strand, within HP15_226at 212.225 kb on + strand, within HP15_226at 212.228 kb on - strand, within HP15_226at 212.244 kb on + strand, within HP15_226at 212.282 kb on + strand, within HP15_226at 212.359 kb on - strand, within HP15_226at 212.387 kb on + strand, within HP15_226at 212.511 kb on + strand, within HP15_226at 212.516 kb on + strand, within HP15_226at 212.516 kb on + strand, within HP15_226at 212.516 kb on + strand, within HP15_226at 212.590 kb on + strand, within HP15_226at 212.669 kb on - strand, within HP15_226at 212.694 kb on + strand, within HP15_226at 212.760 kb on + strand, within HP15_226at 212.760 kb on + strand, within HP15_226at 212.761 kb on + strand, within HP15_226at 212.768 kb on - strand, within HP15_226at 212.788 kb on - strand, within HP15_226at 212.802 kb on - strand, within HP15_226at 212.822 kb on - strand, within HP15_226at 212.966 kb on + strandat 212.989 kb on + strandat 213.019 kb on + strandat 213.059 kb on - strandat 213.073 kb on - strandat 213.120 kb on + strandat 213.159 kb on - strandat 213.172 kb on - strandat 213.191 kb on + strandat 213.232 kb on + strandat 213.271 kb on + strand, within HP15_228at 213.297 kb on + strand, within HP15_228at 213.343 kb on - strand, within HP15_228at 213.364 kb on + strand, within HP15_228at 213.462 kb on - strand, within HP15_228at 213.467 kb on - strand, within HP15_228at 213.542 kb on + strand, within HP15_228at 213.550 kb on - strand, within HP15_228at 213.555 kb on - strand, within HP15_228at 213.555 kb on - strand, within HP15_228at 213.555 kb on - strand, within HP15_228at 213.582 kb on - strand, within HP15_228at 213.672 kb on + strand, within HP15_228at 213.858 kb on - strand, within HP15_228at 213.872 kb on + strand, within HP15_228at 213.921 kb on + strand, within HP15_228at 213.924 kb on + strand, within HP15_228at 213.929 kb on - strand, within HP15_228at 214.034 kb on + strand, within HP15_228at 214.060 kb on + strand, within HP15_228

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
210,238 + HP15_224 0.13 +0.1
210,345 + HP15_224 0.41 +0.2
210,345 + HP15_224 0.41 -1.0
210,350 + HP15_224 0.42 -0.3
210,464 - HP15_224 0.72 -0.2
210,486 + HP15_224 0.77 -0.8
210,494 - HP15_224 0.79 -0.2
210,494 - HP15_224 0.79 +0.1
210,650 - HP15_225 0.14 +0.2
210,727 - HP15_225 0.28 -0.1
210,758 - HP15_225 0.34 +1.2
210,817 - HP15_225 0.44 -1.3
210,821 + HP15_225 0.45 -0.4
210,831 + HP15_225 0.47 -0.2
210,866 + HP15_225 0.53 +0.1
210,895 - HP15_225 0.58 +0.3
210,918 + HP15_225 0.62 -0.4
210,940 - HP15_225 0.66 +0.0
210,999 + HP15_225 0.77 +0.2
210,999 + HP15_225 0.77 +0.2
210,999 + HP15_225 0.77 -0.4
211,026 + HP15_225 0.82 -1.2
211,048 + HP15_225 0.86 -0.8
211,135 + -0.7
211,143 + -0.8
211,251 - -0.1
211,323 + +0.2
211,328 + -0.4
211,328 + -2.2
211,397 + HP15_226 0.11 +0.2
211,528 - HP15_226 0.18 -0.4
211,567 + HP15_226 0.20 -0.4
211,651 - HP15_226 0.25 -0.4
211,657 - HP15_226 0.25 +0.8
211,709 + HP15_226 0.28 +1.0
211,841 + HP15_226 0.34 +0.8
211,879 + HP15_226 0.36 +0.2
211,968 + HP15_226 0.41 +0.7
211,968 + HP15_226 0.41 -0.6
211,976 - HP15_226 0.41 -0.4
211,982 - HP15_226 0.42 +0.1
211,988 - HP15_226 0.42 +0.2
211,999 + HP15_226 0.42 -0.2
212,025 - HP15_226 0.44 +0.3
212,046 + HP15_226 0.45 -1.2
212,049 - HP15_226 0.45 +2.0
212,086 + HP15_226 0.47 +1.4
212,093 - HP15_226 0.47 +0.2
212,162 + HP15_226 0.51 +1.1
212,162 + HP15_226 0.51 +2.2
212,162 + HP15_226 0.51 -0.1
212,162 + HP15_226 0.51 +0.4
212,162 + HP15_226 0.51 +0.1
212,170 - HP15_226 0.51 +1.0
212,170 - HP15_226 0.51 +0.2
212,170 - HP15_226 0.51 +0.6
212,170 - HP15_226 0.51 +0.0
212,202 + HP15_226 0.53 +0.4
212,216 - HP15_226 0.54 -0.7
212,224 - HP15_226 0.54 +0.6
212,225 + HP15_226 0.54 +0.2
212,228 - HP15_226 0.54 -0.8
212,244 + HP15_226 0.55 +0.6
212,282 + HP15_226 0.57 +0.2
212,359 - HP15_226 0.61 +0.4
212,387 + HP15_226 0.62 -0.8
212,511 + HP15_226 0.69 +0.5
212,516 + HP15_226 0.69 +0.4
212,516 + HP15_226 0.69 +0.3
212,516 + HP15_226 0.69 -2.0
212,590 + HP15_226 0.73 -0.5
212,669 - HP15_226 0.77 -0.2
212,694 + HP15_226 0.78 -0.2
212,760 + HP15_226 0.82 -0.2
212,760 + HP15_226 0.82 -0.8
212,761 + HP15_226 0.82 +1.3
212,768 - HP15_226 0.82 +0.2
212,788 - HP15_226 0.83 +0.2
212,802 - HP15_226 0.84 -0.0
212,822 - HP15_226 0.85 -0.6
212,966 + +1.5
212,989 + +3.7
213,019 + +0.3
213,059 - +0.2
213,073 - +2.9
213,120 + +0.0
213,159 - -0.8
213,172 - +0.6
213,191 + +1.2
213,232 + +1.9
213,271 + HP15_228 0.10 +0.6
213,297 + HP15_228 0.12 +0.9
213,343 - HP15_228 0.15 +1.4
213,364 + HP15_228 0.17 +0.9
213,462 - HP15_228 0.23 +1.6
213,467 - HP15_228 0.24 +0.8
213,542 + HP15_228 0.29 +1.9
213,550 - HP15_228 0.30 +0.4
213,555 - HP15_228 0.30 +2.5
213,555 - HP15_228 0.30 +1.1
213,555 - HP15_228 0.30 +1.5
213,582 - HP15_228 0.32 +1.4
213,672 + HP15_228 0.38 +2.7
213,858 - HP15_228 0.51 +1.7
213,872 + HP15_228 0.52 +1.6
213,921 + HP15_228 0.55 +2.0
213,924 + HP15_228 0.55 +1.5
213,929 - HP15_228 0.56 +2.1
214,034 + HP15_228 0.63 -0.2
214,060 + HP15_228 0.65 +2.8

Or see this region's nucleotide sequence