Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2201 and HP15_2202 overlap by 9 nucleotides HP15_2202 and HP15_2203 are separated by 256 nucleotides HP15_2203 and HP15_2204 are separated by 90 nucleotides HP15_2204 and HP15_2205 are separated by 130 nucleotides
HP15_2201: HP15_2201 - transcriptional regulator, LysR family, at 2,318,616 to 2,319,499
_2201
HP15_2202: HP15_2202 - tRNA-(ms(2)io(6)a)-hydroxylase, at 2,319,491 to 2,320,099
_2202
HP15_2203: HP15_2203 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 2,320,356 to 2,322,950
_2203
HP15_2204: HP15_2204 - membrane protein containing DUF81, at 2,323,041 to 2,323,787
_2204
HP15_2205: HP15_2205 - sodium/solute symporter, at 2,323,918 to 2,325,363
_2205
Position (kb)
2320
2321
2322
2323 Strain fitness (log2 ratio)
-1
0
1 at 2319.479 kb on - strand at 2319.616 kb on + strand, within HP15_2202 at 2319.672 kb on + strand, within HP15_2202 at 2319.688 kb on - strand, within HP15_2202 at 2319.715 kb on + strand, within HP15_2202 at 2319.752 kb on - strand, within HP15_2202 at 2319.882 kb on - strand, within HP15_2202 at 2319.904 kb on + strand, within HP15_2202 at 2319.912 kb on + strand, within HP15_2202 at 2319.925 kb on + strand, within HP15_2202 at 2319.995 kb on - strand, within HP15_2202 at 2320.028 kb on + strand, within HP15_2202 at 2320.038 kb on + strand, within HP15_2202 at 2320.045 kb on + strand at 2320.061 kb on - strand at 2320.154 kb on + strand at 2323.027 kb on + strand at 2323.087 kb on - strand at 2323.094 kb on - strand at 2323.174 kb on - strand, within HP15_2204 at 2323.536 kb on + strand, within HP15_2204 at 2323.613 kb on - strand, within HP15_2204 at 2323.613 kb on - strand, within HP15_2204 at 2323.791 kb on + strand at 2323.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,319,479 - -0.2 2,319,616 + HP15_2202 0.21 +1.0 2,319,672 + HP15_2202 0.30 -0.0 2,319,688 - HP15_2202 0.32 -0.4 2,319,715 + HP15_2202 0.37 +0.2 2,319,752 - HP15_2202 0.43 +0.8 2,319,882 - HP15_2202 0.64 +0.5 2,319,904 + HP15_2202 0.68 -0.4 2,319,912 + HP15_2202 0.69 -0.3 2,319,925 + HP15_2202 0.71 -0.0 2,319,995 - HP15_2202 0.83 -0.0 2,320,028 + HP15_2202 0.88 -0.1 2,320,038 + HP15_2202 0.90 +0.5 2,320,045 + +0.2 2,320,061 - -0.2 2,320,154 + +0.1 2,323,027 + -0.2 2,323,087 - -0.6 2,323,094 - +0.3 2,323,174 - HP15_2204 0.18 +0.3 2,323,536 + HP15_2204 0.66 +0.4 2,323,613 - HP15_2204 0.77 +0.4 2,323,613 - HP15_2204 0.77 +0.3 2,323,791 + +0.7 2,323,879 + +0.3
Or see this region's nucleotide sequence