Strain Fitness in Marinobacter adhaerens HP15 around HP15_2203

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2201 and HP15_2202 overlap by 9 nucleotidesHP15_2202 and HP15_2203 are separated by 256 nucleotidesHP15_2203 and HP15_2204 are separated by 90 nucleotidesHP15_2204 and HP15_2205 are separated by 130 nucleotides HP15_2201: HP15_2201 - transcriptional regulator, LysR family, at 2,318,616 to 2,319,499 _2201 HP15_2202: HP15_2202 - tRNA-(ms(2)io(6)a)-hydroxylase, at 2,319,491 to 2,320,099 _2202 HP15_2203: HP15_2203 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 2,320,356 to 2,322,950 _2203 HP15_2204: HP15_2204 - membrane protein containing DUF81, at 2,323,041 to 2,323,787 _2204 HP15_2205: HP15_2205 - sodium/solute symporter, at 2,323,918 to 2,325,363 _2205 Position (kb) 2320 2321 2322 2323Strain fitness (log2 ratio) -1 0 1at 2319.479 kb on - strandat 2319.616 kb on + strand, within HP15_2202at 2319.672 kb on + strand, within HP15_2202at 2319.688 kb on - strand, within HP15_2202at 2319.715 kb on + strand, within HP15_2202at 2319.752 kb on - strand, within HP15_2202at 2319.882 kb on - strand, within HP15_2202at 2319.904 kb on + strand, within HP15_2202at 2319.912 kb on + strand, within HP15_2202at 2319.925 kb on + strand, within HP15_2202at 2319.995 kb on - strand, within HP15_2202at 2320.028 kb on + strand, within HP15_2202at 2320.038 kb on + strand, within HP15_2202at 2320.045 kb on + strandat 2320.061 kb on - strandat 2320.154 kb on + strandat 2323.027 kb on + strandat 2323.087 kb on - strandat 2323.094 kb on - strandat 2323.174 kb on - strand, within HP15_2204at 2323.536 kb on + strand, within HP15_2204at 2323.613 kb on - strand, within HP15_2204at 2323.613 kb on - strand, within HP15_2204at 2323.791 kb on + strandat 2323.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,319,479 - -0.2
2,319,616 + HP15_2202 0.21 +1.0
2,319,672 + HP15_2202 0.30 -0.0
2,319,688 - HP15_2202 0.32 -0.4
2,319,715 + HP15_2202 0.37 +0.2
2,319,752 - HP15_2202 0.43 +0.8
2,319,882 - HP15_2202 0.64 +0.5
2,319,904 + HP15_2202 0.68 -0.4
2,319,912 + HP15_2202 0.69 -0.3
2,319,925 + HP15_2202 0.71 -0.0
2,319,995 - HP15_2202 0.83 -0.0
2,320,028 + HP15_2202 0.88 -0.1
2,320,038 + HP15_2202 0.90 +0.5
2,320,045 + +0.2
2,320,061 - -0.2
2,320,154 + +0.1
2,323,027 + -0.2
2,323,087 - -0.6
2,323,094 - +0.3
2,323,174 - HP15_2204 0.18 +0.3
2,323,536 + HP15_2204 0.66 +0.4
2,323,613 - HP15_2204 0.77 +0.4
2,323,613 - HP15_2204 0.77 +0.3
2,323,791 + +0.7
2,323,879 + +0.3

Or see this region's nucleotide sequence