Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2180 and HP15_2181 are separated by 112 nucleotides HP15_2181 and HP15_2182 are separated by 156 nucleotides HP15_2182 and HP15_2183 are separated by 238 nucleotides
HP15_2180: HP15_2180 - transcriptional regulator, RpiR family protein, at 2,291,896 to 2,292,789
_2180
HP15_2181: HP15_2181 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,292,902 to 2,294,746
_2181
HP15_2182: HP15_2182 - histone-like bacterial DNA-binding protein, at 2,294,903 to 2,295,175
_2182
HP15_2183: HP15_2183 - DNA-binding ATP-dependent protease La, at 2,295,414 to 2,297,831
_2183
Position (kb)
2292
2293
2294
2295 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2292.186 kb on - strand, within HP15_2180 at 2292.261 kb on + strand, within HP15_2180 at 2292.417 kb on + strand, within HP15_2180 at 2292.439 kb on - strand, within HP15_2180 at 2292.540 kb on + strand, within HP15_2180 at 2292.548 kb on - strand, within HP15_2180 at 2292.558 kb on + strand, within HP15_2180 at 2292.691 kb on + strand, within HP15_2180 at 2292.737 kb on + strand at 2292.759 kb on + strand at 2292.766 kb on - strand at 2292.802 kb on + strand at 2292.807 kb on + strand at 2292.869 kb on + strand at 2293.003 kb on + strand at 2293.025 kb on - strand at 2293.150 kb on + strand, within HP15_2181 at 2293.208 kb on + strand, within HP15_2181 at 2293.208 kb on + strand, within HP15_2181 at 2293.216 kb on - strand, within HP15_2181 at 2293.216 kb on - strand, within HP15_2181 at 2293.216 kb on - strand, within HP15_2181 at 2293.395 kb on + strand, within HP15_2181 at 2293.504 kb on + strand, within HP15_2181 at 2293.788 kb on + strand, within HP15_2181 at 2293.952 kb on - strand, within HP15_2181 at 2293.997 kb on - strand, within HP15_2181 at 2294.285 kb on + strand, within HP15_2181 at 2294.613 kb on + strand at 2294.628 kb on - strand at 2294.722 kb on - strand at 2294.764 kb on + strand at 2294.764 kb on + strand at 2294.779 kb on + strand at 2294.819 kb on - strand at 2295.519 kb on - strand at 2295.524 kb on - strand at 2295.536 kb on - strand at 2295.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,292,186 - HP15_2180 0.32 -0.3 2,292,261 + HP15_2180 0.41 +1.1 2,292,417 + HP15_2180 0.58 +0.7 2,292,439 - HP15_2180 0.61 +1.2 2,292,540 + HP15_2180 0.72 +1.0 2,292,548 - HP15_2180 0.73 +1.5 2,292,558 + HP15_2180 0.74 +0.7 2,292,691 + HP15_2180 0.89 +0.9 2,292,737 + +1.9 2,292,759 + -1.7 2,292,766 - +0.0 2,292,802 + -0.4 2,292,807 + +0.6 2,292,869 + -0.5 2,293,003 + -0.9 2,293,025 - -0.9 2,293,150 + HP15_2181 0.13 +0.5 2,293,208 + HP15_2181 0.17 -1.0 2,293,208 + HP15_2181 0.17 -1.7 2,293,216 - HP15_2181 0.17 -1.9 2,293,216 - HP15_2181 0.17 -2.3 2,293,216 - HP15_2181 0.17 -1.0 2,293,395 + HP15_2181 0.27 -1.8 2,293,504 + HP15_2181 0.33 -1.6 2,293,788 + HP15_2181 0.48 -1.9 2,293,952 - HP15_2181 0.57 -1.4 2,293,997 - HP15_2181 0.59 -0.5 2,294,285 + HP15_2181 0.75 -0.7 2,294,613 + +1.3 2,294,628 - -0.9 2,294,722 - +0.2 2,294,764 + +0.1 2,294,764 + -0.9 2,294,779 + -1.0 2,294,819 - +0.6 2,295,519 - +0.2 2,295,524 - -0.2 2,295,536 - -1.0 2,295,654 - +1.5
Or see this region's nucleotide sequence