Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22500

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c22490 and PGA1_c22500 are separated by 595 nucleotidesPGA1_c22500 and PGA1_c22510 are separated by 89 nucleotidesPGA1_c22510 and PGA1_c22520 are separated by 74 nucleotidesPGA1_c22520 and PGA1_c22530 are separated by 190 nucleotides PGA1_c22490: PGA1_c22490 - hypothetical protein, at 2,333,429 to 2,333,863 _c22490 PGA1_c22500: PGA1_c22500 - hypothetical protein, at 2,334,459 to 2,334,719 _c22500 PGA1_c22510: PGA1_c22510 - hypothetical protein, at 2,334,809 to 2,335,072 _c22510 PGA1_c22520: PGA1_c22520 - helix-turn-helix domain-containing protein, at 2,335,147 to 2,335,470 _c22520 PGA1_c22530: PGA1_c22530 - hypothetical protein, at 2,335,661 to 2,336,398 _c22530 Position (kb) 2334 2335Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2333.481 kb on - strand, within PGA1_c22490at 2333.498 kb on - strand, within PGA1_c22490at 2333.626 kb on + strand, within PGA1_c22490at 2333.647 kb on + strand, within PGA1_c22490at 2333.647 kb on - strand, within PGA1_c22490at 2333.818 kb on - strand, within PGA1_c22490at 2333.855 kb on - strandat 2333.901 kb on - strandat 2333.925 kb on - strandat 2333.940 kb on + strandat 2334.099 kb on + strandat 2334.131 kb on + strandat 2334.165 kb on + strandat 2334.165 kb on + strandat 2334.173 kb on - strandat 2334.173 kb on - strandat 2334.173 kb on - strandat 2334.273 kb on - strandat 2334.281 kb on - strandat 2334.366 kb on + strandat 2334.366 kb on + strandat 2334.540 kb on - strand, within PGA1_c22500at 2334.571 kb on - strand, within PGA1_c22500at 2334.575 kb on - strand, within PGA1_c22500at 2334.674 kb on + strand, within PGA1_c22500at 2334.674 kb on + strand, within PGA1_c22500at 2334.674 kb on + strand, within PGA1_c22500at 2334.674 kb on + strand, within PGA1_c22500at 2334.742 kb on + strandat 2334.745 kb on - strandat 2334.839 kb on - strand, within PGA1_c22510at 2334.841 kb on + strand, within PGA1_c22510at 2334.877 kb on + strand, within PGA1_c22510at 2334.892 kb on - strand, within PGA1_c22510at 2334.892 kb on - strand, within PGA1_c22510at 2334.918 kb on - strand, within PGA1_c22510at 2334.918 kb on - strand, within PGA1_c22510at 2334.944 kb on - strand, within PGA1_c22510at 2334.961 kb on - strand, within PGA1_c22510at 2334.961 kb on - strand, within PGA1_c22510at 2335.455 kb on + strandat 2335.465 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.479 kb on + strandat 2335.482 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.487 kb on - strandat 2335.495 kb on - strandat 2335.509 kb on - strandat 2335.509 kb on - strandat 2335.554 kb on + strandat 2335.559 kb on + strandat 2335.562 kb on - strandat 2335.562 kb on - strandat 2335.593 kb on - strandat 2335.593 kb on - strandat 2335.593 kb on - strandat 2335.600 kb on + strandat 2335.600 kb on + strandat 2335.600 kb on + strandat 2335.600 kb on + strandat 2335.601 kb on - strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.607 kb on + strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.608 kb on - strandat 2335.613 kb on - strandat 2335.614 kb on + strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.615 kb on - strandat 2335.668 kb on + strandat 2335.676 kb on - strandat 2335.681 kb on + strandat 2335.691 kb on + strandat 2335.691 kb on + strandat 2335.692 kb on - strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.694 kb on + strandat 2335.699 kb on + strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.702 kb on - strandat 2335.704 kb on + strandat 2335.704 kb on + strandat 2335.706 kb on + strandat 2335.706 kb on + strandat 2335.709 kb on - strandat 2335.712 kb on - strandat 2335.713 kb on - strandat 2335.714 kb on - strandat 2335.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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2,333,481 - PGA1_c22490 0.12 -0.6
2,333,498 - PGA1_c22490 0.16 -0.4
2,333,626 + PGA1_c22490 0.45 +0.2
2,333,647 + PGA1_c22490 0.50 +0.3
2,333,647 - PGA1_c22490 0.50 +1.3
2,333,818 - PGA1_c22490 0.89 -0.1
2,333,855 - -0.4
2,333,901 - +0.7
2,333,925 - -0.5
2,333,940 + -0.4
2,334,099 + -0.4
2,334,131 + +0.2
2,334,165 + -1.0
2,334,165 + +0.6
2,334,173 - +0.3
2,334,173 - -0.8
2,334,173 - +0.6
2,334,273 - +0.4
2,334,281 - +0.1
2,334,366 + -0.1
2,334,366 + +0.2
2,334,540 - PGA1_c22500 0.31 -0.4
2,334,571 - PGA1_c22500 0.43 -0.0
2,334,575 - PGA1_c22500 0.44 +0.7
2,334,674 + PGA1_c22500 0.82 +0.6
2,334,674 + PGA1_c22500 0.82 -0.1
2,334,674 + PGA1_c22500 0.82 +2.4
2,334,674 + PGA1_c22500 0.82 -0.2
2,334,742 + +0.4
2,334,745 - +0.3
2,334,839 - PGA1_c22510 0.11 +0.4
2,334,841 + PGA1_c22510 0.12 -0.4
2,334,877 + PGA1_c22510 0.26 -2.9
2,334,892 - PGA1_c22510 0.31 -0.2
2,334,892 - PGA1_c22510 0.31 -2.6
2,334,918 - PGA1_c22510 0.41 +0.6
2,334,918 - PGA1_c22510 0.41 +0.1
2,334,944 - PGA1_c22510 0.51 -0.3
2,334,961 - PGA1_c22510 0.58 +0.7
2,334,961 - PGA1_c22510 0.58 +0.8
2,335,455 + +0.6
2,335,465 + -0.2
2,335,479 + +0.5
2,335,479 + +0.1
2,335,479 + +0.3
2,335,479 + +1.1
2,335,479 + -1.9
2,335,479 + +0.4
2,335,479 + -0.8
2,335,479 + -1.0
2,335,479 + -2.6
2,335,479 + +2.0
2,335,479 + -0.4
2,335,479 + +0.9
2,335,479 + +0.2
2,335,479 + +0.6
2,335,479 + -1.1
2,335,479 + -0.5
2,335,479 + +2.2
2,335,479 + -0.1
2,335,479 + -0.4
2,335,479 + +0.0
2,335,479 + -0.2
2,335,479 + -0.1
2,335,479 + +0.3
2,335,479 + -0.9
2,335,479 + -0.1
2,335,479 + +0.2
2,335,479 + -1.0
2,335,479 + -1.1
2,335,479 + +1.5
2,335,482 - +0.3
2,335,487 - +0.2
2,335,487 - -1.3
2,335,487 - +0.6
2,335,487 - +0.6
2,335,487 - -0.9
2,335,487 - +0.3
2,335,487 - +1.0
2,335,487 - -0.1
2,335,487 - -0.9
2,335,487 - +0.6
2,335,487 - -0.6
2,335,487 - -1.4
2,335,487 - +0.4
2,335,487 - -0.9
2,335,487 - -0.6
2,335,487 - +0.5
2,335,487 - +1.0
2,335,487 - -0.1
2,335,487 - +0.3
2,335,487 - +0.4
2,335,487 - +0.3
2,335,495 - -0.8
2,335,509 - -1.1
2,335,509 - +0.6
2,335,554 + -0.4
2,335,559 + -0.8
2,335,562 - -0.1
2,335,562 - +1.2
2,335,593 - +0.6
2,335,593 - +0.6
2,335,593 - -0.4
2,335,600 + -1.0
2,335,600 + +1.3
2,335,600 + -0.9
2,335,600 + -0.1
2,335,601 - +0.3
2,335,607 + +0.6
2,335,607 + +0.3
2,335,607 + -0.4
2,335,607 + -0.7
2,335,607 + -0.0
2,335,607 + +0.2
2,335,607 + -1.4
2,335,607 + +0.8
2,335,607 + +1.1
2,335,607 + +0.3
2,335,607 + +0.2
2,335,607 + -0.4
2,335,607 + +0.4
2,335,607 + -0.8
2,335,607 + +0.4
2,335,607 + -1.5
2,335,608 - -1.4
2,335,608 - -1.0
2,335,608 - +1.5
2,335,608 - +2.0
2,335,608 - +1.5
2,335,608 - +1.2
2,335,608 - +0.6
2,335,608 - -0.7
2,335,608 - -1.2
2,335,608 - -0.6
2,335,608 - +0.4
2,335,608 - -0.5
2,335,608 - +0.2
2,335,613 - -1.7
2,335,614 + +0.2
2,335,615 - +0.0
2,335,615 - -2.4
2,335,615 - -2.4
2,335,615 - -0.4
2,335,615 - +0.1
2,335,615 - -0.8
2,335,615 - +1.0
2,335,615 - +0.6
2,335,615 - +0.6
2,335,615 - +1.0
2,335,615 - +0.0
2,335,615 - +0.0
2,335,615 - +0.9
2,335,615 - -0.7
2,335,615 - +0.6
2,335,615 - -0.4
2,335,615 - -0.9
2,335,615 - -2.4
2,335,615 - -0.8
2,335,615 - +0.6
2,335,615 - -1.1
2,335,668 + -0.4
2,335,676 - +0.2
2,335,681 + -2.7
2,335,691 + +0.1
2,335,691 + -0.2
2,335,692 - +0.7
2,335,694 + -1.1
2,335,694 + -0.4
2,335,694 + -0.3
2,335,694 + +1.6
2,335,694 + +0.1
2,335,694 + -2.6
2,335,694 + +1.6
2,335,694 + +1.0
2,335,694 + -0.4
2,335,694 + +0.6
2,335,694 + +0.7
2,335,694 + -0.7
2,335,694 + -0.6
2,335,694 + -1.1
2,335,694 + -1.4
2,335,694 + -1.0
2,335,694 + +0.8
2,335,694 + +1.0
2,335,694 + -0.9
2,335,694 + -1.3
2,335,694 + -1.4
2,335,694 + +0.6
2,335,694 + +0.9
2,335,694 + +0.6
2,335,694 + +0.4
2,335,694 + -1.3
2,335,694 + +0.3
2,335,694 + -0.4
2,335,694 + +0.3
2,335,694 + -0.9
2,335,694 + +0.0
2,335,694 + -2.4
2,335,694 + -1.0
2,335,694 + -0.8
2,335,694 + -0.4
2,335,694 + -0.3
2,335,694 + +0.7
2,335,694 + +0.5
2,335,694 + -1.0
2,335,694 + -2.0
2,335,694 + +0.2
2,335,694 + +0.6
2,335,694 + -0.7
2,335,694 + -0.9
2,335,694 + -0.1
2,335,694 + +1.9
2,335,694 + -1.5
2,335,699 + -0.8
2,335,702 - +0.0
2,335,702 - -0.1
2,335,702 - -0.7
2,335,702 - -0.1
2,335,702 - -1.3
2,335,702 - -1.1
2,335,702 - -0.8
2,335,702 - +0.0
2,335,702 - +0.1
2,335,702 - -0.1
2,335,702 - -1.7
2,335,702 - +1.6
2,335,702 - -1.2
2,335,702 - +2.4
2,335,702 - +0.0
2,335,702 - +1.1
2,335,702 - +0.3
2,335,702 - -1.0
2,335,702 - -0.5
2,335,702 - -0.2
2,335,702 - -0.8
2,335,702 - +0.6
2,335,702 - -1.2
2,335,702 - +0.1
2,335,702 - +0.2
2,335,702 - -1.1
2,335,702 - +0.7
2,335,702 - -0.7
2,335,702 - -0.3
2,335,702 - -2.2
2,335,702 - -0.3
2,335,702 - +1.6
2,335,702 - -0.1
2,335,702 - -1.0
2,335,702 - +1.3
2,335,702 - -1.0
2,335,702 - -1.4
2,335,702 - +1.6
2,335,702 - -2.9
2,335,702 - +1.2
2,335,702 - -1.3
2,335,702 - -0.7
2,335,702 - -0.4
2,335,702 - -1.4
2,335,702 - +0.9
2,335,702 - +0.4
2,335,702 - -0.7
2,335,702 - +2.9
2,335,702 - -0.9
2,335,702 - -0.6
2,335,702 - -1.5
2,335,702 - +0.0
2,335,702 - -1.4
2,335,702 - -1.9
2,335,702 - -0.2
2,335,702 - +1.6
2,335,702 - -1.5
2,335,702 - -0.4
2,335,702 - -1.7
2,335,702 - -0.5
2,335,704 + -1.0
2,335,704 + +0.2
2,335,706 + -0.7
2,335,706 + -2.7
2,335,709 - +0.2
2,335,712 - -0.1
2,335,713 - +1.4
2,335,714 - +0.0
2,335,715 + +0.1

Or see this region's nucleotide sequence