Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02300

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02280 and PGA1_c02290 are separated by 2 nucleotidesPGA1_c02290 and PGA1_c02300 overlap by 8 nucleotidesPGA1_c02300 and PGA1_c02310 overlap by 4 nucleotides PGA1_c02280: PGA1_c02280 - hypothetical protein, at 204,727 to 205,677 _c02280 PGA1_c02290: PGA1_c02290 - putative NAD dependent epimerase/dehydratase, at 205,680 to 206,477 _c02290 PGA1_c02300: PGA1_c02300 - putative glycosyl transferase, at 206,470 to 207,246 _c02300 PGA1_c02310: PGA1_c02310 - putative pyridoxal-phosphate-dependent aminotransferase, at 207,243 to 208,439 _c02310 Position (kb) 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 205.477 kb on + strand, within PGA1_c02280at 205.483 kb on - strand, within PGA1_c02280at 205.483 kb on - strand, within PGA1_c02280at 205.485 kb on - strand, within PGA1_c02280at 205.491 kb on + strand, within PGA1_c02280at 205.548 kb on - strand, within PGA1_c02280at 205.549 kb on - strand, within PGA1_c02280at 205.578 kb on + strand, within PGA1_c02280at 205.601 kb on + strandat 205.638 kb on - strandat 205.724 kb on + strandat 205.731 kb on + strandat 205.731 kb on + strandat 205.731 kb on + strandat 205.734 kb on - strandat 205.739 kb on - strandat 205.750 kb on + strandat 205.759 kb on - strandat 205.783 kb on + strand, within PGA1_c02290at 205.783 kb on + strand, within PGA1_c02290at 205.783 kb on + strand, within PGA1_c02290at 205.788 kb on + strand, within PGA1_c02290at 205.788 kb on + strand, within PGA1_c02290at 205.791 kb on - strand, within PGA1_c02290at 205.791 kb on - strand, within PGA1_c02290at 205.796 kb on - strand, within PGA1_c02290at 205.796 kb on - strand, within PGA1_c02290at 205.807 kb on + strand, within PGA1_c02290at 205.812 kb on + strand, within PGA1_c02290at 205.812 kb on + strand, within PGA1_c02290at 205.812 kb on + strand, within PGA1_c02290at 205.815 kb on - strand, within PGA1_c02290at 205.820 kb on - strand, within PGA1_c02290at 205.836 kb on - strand, within PGA1_c02290at 205.864 kb on + strand, within PGA1_c02290at 205.882 kb on - strand, within PGA1_c02290at 205.888 kb on + strand, within PGA1_c02290at 205.960 kb on + strand, within PGA1_c02290at 205.994 kb on + strand, within PGA1_c02290at 205.994 kb on + strand, within PGA1_c02290at 206.008 kb on + strand, within PGA1_c02290at 206.012 kb on - strand, within PGA1_c02290at 206.012 kb on - strand, within PGA1_c02290at 206.074 kb on + strand, within PGA1_c02290at 206.077 kb on - strand, within PGA1_c02290at 206.096 kb on + strand, within PGA1_c02290at 206.179 kb on + strand, within PGA1_c02290at 206.215 kb on - strand, within PGA1_c02290at 206.215 kb on - strand, within PGA1_c02290at 206.232 kb on - strand, within PGA1_c02290at 206.239 kb on + strand, within PGA1_c02290at 206.270 kb on + strand, within PGA1_c02290at 206.270 kb on + strand, within PGA1_c02290at 206.278 kb on - strand, within PGA1_c02290at 206.278 kb on - strand, within PGA1_c02290at 206.278 kb on - strand, within PGA1_c02290at 206.278 kb on - strand, within PGA1_c02290at 206.278 kb on - strand, within PGA1_c02290at 206.278 kb on - strand, within PGA1_c02290at 206.306 kb on + strand, within PGA1_c02290at 206.319 kb on + strand, within PGA1_c02290at 206.436 kb on - strandat 206.441 kb on - strandat 206.445 kb on - strandat 206.448 kb on + strandat 206.449 kb on + strandat 206.502 kb on + strandat 206.523 kb on + strandat 206.526 kb on - strandat 206.531 kb on - strandat 206.531 kb on - strandat 206.538 kb on - strandat 206.571 kb on + strand, within PGA1_c02300at 206.575 kb on - strand, within PGA1_c02300at 206.586 kb on + strand, within PGA1_c02300at 206.586 kb on + strand, within PGA1_c02300at 206.600 kb on + strand, within PGA1_c02300at 206.603 kb on + strand, within PGA1_c02300at 206.608 kb on - strand, within PGA1_c02300at 206.608 kb on - strand, within PGA1_c02300at 206.681 kb on + strand, within PGA1_c02300at 206.710 kb on - strand, within PGA1_c02300at 206.727 kb on + strand, within PGA1_c02300at 206.729 kb on + strand, within PGA1_c02300at 206.729 kb on + strand, within PGA1_c02300at 206.771 kb on + strand, within PGA1_c02300at 206.778 kb on + strand, within PGA1_c02300at 206.802 kb on - strand, within PGA1_c02300at 206.803 kb on - strand, within PGA1_c02300at 206.803 kb on - strand, within PGA1_c02300at 206.808 kb on - strand, within PGA1_c02300at 206.810 kb on + strand, within PGA1_c02300at 206.810 kb on + strand, within PGA1_c02300at 206.818 kb on - strand, within PGA1_c02300at 206.841 kb on + strand, within PGA1_c02300at 206.844 kb on + strand, within PGA1_c02300at 206.903 kb on - strand, within PGA1_c02300at 206.913 kb on - strand, within PGA1_c02300at 206.913 kb on - strand, within PGA1_c02300at 206.928 kb on + strand, within PGA1_c02300at 206.944 kb on + strand, within PGA1_c02300at 206.947 kb on - strand, within PGA1_c02300at 206.954 kb on + strand, within PGA1_c02300at 206.987 kb on - strand, within PGA1_c02300at 206.998 kb on + strand, within PGA1_c02300at 206.998 kb on + strand, within PGA1_c02300at 207.033 kb on - strand, within PGA1_c02300at 207.065 kb on + strand, within PGA1_c02300at 207.065 kb on + strand, within PGA1_c02300at 207.073 kb on - strand, within PGA1_c02300at 207.073 kb on - strand, within PGA1_c02300at 207.073 kb on - strand, within PGA1_c02300at 207.122 kb on - strand, within PGA1_c02300at 207.179 kb on + strandat 207.187 kb on - strandat 207.187 kb on - strandat 207.200 kb on + strandat 207.208 kb on - strandat 207.231 kb on - strandat 207.243 kb on - strandat 207.274 kb on + strandat 207.274 kb on + strandat 207.282 kb on - strandat 207.282 kb on - strandat 207.304 kb on + strandat 207.355 kb on - strandat 207.398 kb on - strand, within PGA1_c02310at 207.398 kb on - strand, within PGA1_c02310at 207.408 kb on - strand, within PGA1_c02310at 207.414 kb on + strand, within PGA1_c02310at 207.425 kb on + strand, within PGA1_c02310at 207.443 kb on + strand, within PGA1_c02310at 207.494 kb on + strand, within PGA1_c02310at 207.496 kb on - strand, within PGA1_c02310at 207.518 kb on + strand, within PGA1_c02310at 207.518 kb on + strand, within PGA1_c02310at 207.518 kb on + strand, within PGA1_c02310at 207.526 kb on - strand, within PGA1_c02310at 207.571 kb on + strand, within PGA1_c02310at 207.584 kb on - strand, within PGA1_c02310at 207.607 kb on + strand, within PGA1_c02310at 207.607 kb on + strand, within PGA1_c02310at 207.607 kb on + strand, within PGA1_c02310at 207.615 kb on - strand, within PGA1_c02310at 207.615 kb on - strand, within PGA1_c02310at 207.615 kb on - strand, within PGA1_c02310at 207.617 kb on + strand, within PGA1_c02310at 207.622 kb on + strand, within PGA1_c02310at 207.626 kb on + strand, within PGA1_c02310at 207.642 kb on + strand, within PGA1_c02310at 207.642 kb on + strand, within PGA1_c02310at 207.669 kb on - strand, within PGA1_c02310at 207.688 kb on - strand, within PGA1_c02310at 207.753 kb on - strand, within PGA1_c02310at 207.755 kb on + strand, within PGA1_c02310at 207.755 kb on + strand, within PGA1_c02310at 207.763 kb on - strand, within PGA1_c02310at 207.787 kb on + strand, within PGA1_c02310at 207.848 kb on + strand, within PGA1_c02310at 207.859 kb on - strand, within PGA1_c02310at 207.870 kb on - strand, within PGA1_c02310at 207.880 kb on - strand, within PGA1_c02310at 207.898 kb on + strand, within PGA1_c02310at 207.898 kb on + strand, within PGA1_c02310at 207.906 kb on - strand, within PGA1_c02310at 207.906 kb on - strand, within PGA1_c02310at 207.906 kb on - strand, within PGA1_c02310at 207.910 kb on + strand, within PGA1_c02310at 207.918 kb on - strand, within PGA1_c02310at 207.920 kb on + strand, within PGA1_c02310at 207.923 kb on - strand, within PGA1_c02310at 207.930 kb on - strand, within PGA1_c02310at 207.942 kb on + strand, within PGA1_c02310at 207.944 kb on - strand, within PGA1_c02310at 207.949 kb on - strand, within PGA1_c02310at 207.977 kb on + strand, within PGA1_c02310at 207.977 kb on + strand, within PGA1_c02310at 207.978 kb on + strand, within PGA1_c02310at 207.978 kb on + strand, within PGA1_c02310at 207.978 kb on + strand, within PGA1_c02310at 207.978 kb on + strand, within PGA1_c02310at 207.985 kb on - strand, within PGA1_c02310at 207.986 kb on - strand, within PGA1_c02310at 207.986 kb on - strand, within PGA1_c02310at 207.986 kb on - strand, within PGA1_c02310at 207.986 kb on - strand, within PGA1_c02310at 208.038 kb on - strand, within PGA1_c02310at 208.067 kb on + strand, within PGA1_c02310at 208.110 kb on + strand, within PGA1_c02310at 208.126 kb on + strand, within PGA1_c02310at 208.126 kb on + strand, within PGA1_c02310at 208.126 kb on + strand, within PGA1_c02310at 208.126 kb on + strand, within PGA1_c02310at 208.126 kb on + strand, within PGA1_c02310at 208.126 kb on + strand, within PGA1_c02310at 208.146 kb on + strand, within PGA1_c02310at 208.146 kb on + strand, within PGA1_c02310at 208.154 kb on - strand, within PGA1_c02310at 208.159 kb on + strand, within PGA1_c02310at 208.159 kb on - strand, within PGA1_c02310at 208.159 kb on - strand, within PGA1_c02310at 208.167 kb on - strand, within PGA1_c02310at 208.172 kb on - strand, within PGA1_c02310at 208.172 kb on - strand, within PGA1_c02310at 208.179 kb on - strand, within PGA1_c02310at 208.198 kb on + strand, within PGA1_c02310at 208.208 kb on + strand, within PGA1_c02310at 208.208 kb on + strand, within PGA1_c02310at 208.208 kb on + strand, within PGA1_c02310at 208.208 kb on + strand, within PGA1_c02310at 208.208 kb on + strand, within PGA1_c02310at 208.216 kb on - strand, within PGA1_c02310at 208.216 kb on - strand, within PGA1_c02310at 208.216 kb on - strand, within PGA1_c02310at 208.223 kb on + strand, within PGA1_c02310at 208.231 kb on - strand, within PGA1_c02310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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205,477 + PGA1_c02280 0.79 -0.7
205,483 - PGA1_c02280 0.79 -0.2
205,483 - PGA1_c02280 0.79 +1.4
205,485 - PGA1_c02280 0.80 -0.0
205,491 + PGA1_c02280 0.80 -1.0
205,548 - PGA1_c02280 0.86 +0.8
205,549 - PGA1_c02280 0.86 +0.8
205,578 + PGA1_c02280 0.89 +0.8
205,601 + +0.6
205,638 - +1.8
205,724 + -1.4
205,731 + +0.0
205,731 + -0.1
205,731 + +0.0
205,734 - +1.4
205,739 - +0.3
205,750 + -0.2
205,759 - -0.2
205,783 + PGA1_c02290 0.13 +0.7
205,783 + PGA1_c02290 0.13 +0.5
205,783 + PGA1_c02290 0.13 +0.8
205,788 + PGA1_c02290 0.14 +1.1
205,788 + PGA1_c02290 0.14 +0.8
205,791 - PGA1_c02290 0.14 -0.6
205,791 - PGA1_c02290 0.14 +2.5
205,796 - PGA1_c02290 0.15 +1.1
205,796 - PGA1_c02290 0.15 +1.4
205,807 + PGA1_c02290 0.16 -0.3
205,812 + PGA1_c02290 0.17 +0.3
205,812 + PGA1_c02290 0.17 +0.8
205,812 + PGA1_c02290 0.17 +0.4
205,815 - PGA1_c02290 0.17 +1.2
205,820 - PGA1_c02290 0.18 -0.7
205,836 - PGA1_c02290 0.20 -0.7
205,864 + PGA1_c02290 0.23 -1.7
205,882 - PGA1_c02290 0.25 -2.5
205,888 + PGA1_c02290 0.26 +0.4
205,960 + PGA1_c02290 0.35 -0.7
205,994 + PGA1_c02290 0.39 -0.4
205,994 + PGA1_c02290 0.39 +0.0
206,008 + PGA1_c02290 0.41 -1.2
206,012 - PGA1_c02290 0.42 -0.7
206,012 - PGA1_c02290 0.42 -2.0
206,074 + PGA1_c02290 0.49 -0.7
206,077 - PGA1_c02290 0.50 -0.2
206,096 + PGA1_c02290 0.52 +0.5
206,179 + PGA1_c02290 0.63 +0.8
206,215 - PGA1_c02290 0.67 +0.1
206,215 - PGA1_c02290 0.67 -0.0
206,232 - PGA1_c02290 0.69 +0.0
206,239 + PGA1_c02290 0.70 -0.0
206,270 + PGA1_c02290 0.74 +0.0
206,270 + PGA1_c02290 0.74 -1.3
206,278 - PGA1_c02290 0.75 -0.4
206,278 - PGA1_c02290 0.75 -0.4
206,278 - PGA1_c02290 0.75 -0.5
206,278 - PGA1_c02290 0.75 -2.5
206,278 - PGA1_c02290 0.75 -1.0
206,278 - PGA1_c02290 0.75 +1.1
206,306 + PGA1_c02290 0.78 -0.1
206,319 + PGA1_c02290 0.80 -0.2
206,436 - -0.2
206,441 - +0.6
206,445 - +0.8
206,448 + -0.7
206,449 + -0.1
206,502 + -1.5
206,523 + -1.7
206,526 - +2.0
206,531 - +0.5
206,531 - +1.3
206,538 - -1.3
206,571 + PGA1_c02300 0.13 -0.9
206,575 - PGA1_c02300 0.14 -2.2
206,586 + PGA1_c02300 0.15 -0.4
206,586 + PGA1_c02300 0.15 -0.5
206,600 + PGA1_c02300 0.17 +0.6
206,603 + PGA1_c02300 0.17 -0.3
206,608 - PGA1_c02300 0.18 -2.0
206,608 - PGA1_c02300 0.18 -0.7
206,681 + PGA1_c02300 0.27 +1.2
206,710 - PGA1_c02300 0.31 -0.2
206,727 + PGA1_c02300 0.33 +0.3
206,729 + PGA1_c02300 0.33 -0.3
206,729 + PGA1_c02300 0.33 +0.7
206,771 + PGA1_c02300 0.39 -0.7
206,778 + PGA1_c02300 0.40 +0.2
206,802 - PGA1_c02300 0.43 +0.4
206,803 - PGA1_c02300 0.43 +0.5
206,803 - PGA1_c02300 0.43 +0.6
206,808 - PGA1_c02300 0.44 +0.3
206,810 + PGA1_c02300 0.44 +0.3
206,810 + PGA1_c02300 0.44 -0.6
206,818 - PGA1_c02300 0.45 -1.0
206,841 + PGA1_c02300 0.48 -2.1
206,844 + PGA1_c02300 0.48 -0.7
206,903 - PGA1_c02300 0.56 -1.2
206,913 - PGA1_c02300 0.57 -0.2
206,913 - PGA1_c02300 0.57 -0.7
206,928 + PGA1_c02300 0.59 +0.1
206,944 + PGA1_c02300 0.61 -0.5
206,947 - PGA1_c02300 0.61 -0.8
206,954 + PGA1_c02300 0.62 +0.3
206,987 - PGA1_c02300 0.67 -0.1
206,998 + PGA1_c02300 0.68 +0.2
206,998 + PGA1_c02300 0.68 -0.4
207,033 - PGA1_c02300 0.72 -1.6
207,065 + PGA1_c02300 0.77 -1.3
207,065 + PGA1_c02300 0.77 +0.5
207,073 - PGA1_c02300 0.78 -1.6
207,073 - PGA1_c02300 0.78 +0.4
207,073 - PGA1_c02300 0.78 +0.4
207,122 - PGA1_c02300 0.84 -0.7
207,179 + +0.1
207,187 - +1.0
207,187 - -1.3
207,200 + +1.4
207,208 - -0.3
207,231 - +0.7
207,243 - -0.0
207,274 + +2.2
207,274 + +1.3
207,282 - -1.3
207,282 - +0.8
207,304 + +1.6
207,355 - +0.1
207,398 - PGA1_c02310 0.13 -1.4
207,398 - PGA1_c02310 0.13 +0.4
207,408 - PGA1_c02310 0.14 +0.0
207,414 + PGA1_c02310 0.14 +0.6
207,425 + PGA1_c02310 0.15 -0.3
207,443 + PGA1_c02310 0.17 -1.0
207,494 + PGA1_c02310 0.21 -1.5
207,496 - PGA1_c02310 0.21 +0.2
207,518 + PGA1_c02310 0.23 -0.3
207,518 + PGA1_c02310 0.23 -0.5
207,518 + PGA1_c02310 0.23 -0.6
207,526 - PGA1_c02310 0.24 -0.7
207,571 + PGA1_c02310 0.27 +0.9
207,584 - PGA1_c02310 0.28 -3.0
207,607 + PGA1_c02310 0.30 -0.1
207,607 + PGA1_c02310 0.30 +1.7
207,607 + PGA1_c02310 0.30 -0.4
207,615 - PGA1_c02310 0.31 -2.3
207,615 - PGA1_c02310 0.31 +0.3
207,615 - PGA1_c02310 0.31 -0.1
207,617 + PGA1_c02310 0.31 +0.1
207,622 + PGA1_c02310 0.32 +1.3
207,626 + PGA1_c02310 0.32 +0.3
207,642 + PGA1_c02310 0.33 -1.5
207,642 + PGA1_c02310 0.33 -2.8
207,669 - PGA1_c02310 0.36 +0.2
207,688 - PGA1_c02310 0.37 +0.2
207,753 - PGA1_c02310 0.43 -0.7
207,755 + PGA1_c02310 0.43 +0.0
207,755 + PGA1_c02310 0.43 -0.3
207,763 - PGA1_c02310 0.43 +0.7
207,787 + PGA1_c02310 0.45 +0.9
207,848 + PGA1_c02310 0.51 +0.0
207,859 - PGA1_c02310 0.51 +0.6
207,870 - PGA1_c02310 0.52 +0.5
207,880 - PGA1_c02310 0.53 +1.0
207,898 + PGA1_c02310 0.55 +0.9
207,898 + PGA1_c02310 0.55 -0.1
207,906 - PGA1_c02310 0.55 -0.1
207,906 - PGA1_c02310 0.55 +0.6
207,906 - PGA1_c02310 0.55 -2.0
207,910 + PGA1_c02310 0.56 -2.7
207,918 - PGA1_c02310 0.56 -2.1
207,920 + PGA1_c02310 0.57 +1.6
207,923 - PGA1_c02310 0.57 -0.0
207,930 - PGA1_c02310 0.57 -0.2
207,942 + PGA1_c02310 0.58 +0.3
207,944 - PGA1_c02310 0.59 -0.3
207,949 - PGA1_c02310 0.59 -1.9
207,977 + PGA1_c02310 0.61 -0.2
207,977 + PGA1_c02310 0.61 +1.2
207,978 + PGA1_c02310 0.61 +0.6
207,978 + PGA1_c02310 0.61 +1.0
207,978 + PGA1_c02310 0.61 -0.4
207,978 + PGA1_c02310 0.61 +0.0
207,985 - PGA1_c02310 0.62 -0.7
207,986 - PGA1_c02310 0.62 +0.9
207,986 - PGA1_c02310 0.62 +0.4
207,986 - PGA1_c02310 0.62 +1.2
207,986 - PGA1_c02310 0.62 -0.3
208,038 - PGA1_c02310 0.66 +0.3
208,067 + PGA1_c02310 0.69 +0.2
208,110 + PGA1_c02310 0.72 -0.1
208,126 + PGA1_c02310 0.74 -0.5
208,126 + PGA1_c02310 0.74 +0.0
208,126 + PGA1_c02310 0.74 -0.7
208,126 + PGA1_c02310 0.74 -1.1
208,126 + PGA1_c02310 0.74 +0.2
208,126 + PGA1_c02310 0.74 -0.1
208,146 + PGA1_c02310 0.75 +0.0
208,146 + PGA1_c02310 0.75 +0.3
208,154 - PGA1_c02310 0.76 +1.0
208,159 + PGA1_c02310 0.77 +0.7
208,159 - PGA1_c02310 0.77 +1.1
208,159 - PGA1_c02310 0.77 -0.3
208,167 - PGA1_c02310 0.77 -0.3
208,172 - PGA1_c02310 0.78 +0.4
208,172 - PGA1_c02310 0.78 -1.8
208,179 - PGA1_c02310 0.78 -0.6
208,198 + PGA1_c02310 0.80 +2.9
208,208 + PGA1_c02310 0.81 +1.1
208,208 + PGA1_c02310 0.81 -0.4
208,208 + PGA1_c02310 0.81 -1.4
208,208 + PGA1_c02310 0.81 +0.6
208,208 + PGA1_c02310 0.81 +1.1
208,216 - PGA1_c02310 0.81 +0.9
208,216 - PGA1_c02310 0.81 +0.1
208,216 - PGA1_c02310 0.81 -1.7
208,223 + PGA1_c02310 0.82 -2.1
208,231 - PGA1_c02310 0.83 -0.4

Or see this region's nucleotide sequence