Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2038 and HP15_2039 are separated by 3 nucleotides HP15_2039 and HP15_2040 overlap by 8 nucleotides HP15_2040 and HP15_2041 are separated by 120 nucleotides HP15_2041 and HP15_2042 are separated by 30 nucleotides
HP15_2038: HP15_2038 - MotA/TolQ/ExbB proton channel, at 2,138,062 to 2,138,751
_2038
HP15_2039: HP15_2039 - 4-hydroxybenzoyl-CoA thioesterase, at 2,138,755 to 2,139,216
_2039
HP15_2040: HP15_2040 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,139,209 to 2,140,252
_2040
HP15_2041: HP15_2041 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,140,373 to 2,141,002
_2041
HP15_2042: HP15_2042 - crossover junction endodeoxyribonuclease RuvC, at 2,141,033 to 2,141,560
_2042
Position (kb)
2139
2140
2141 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2138.796 kb on - strand at 2138.833 kb on + strand, within HP15_2039 at 2138.904 kb on + strand, within HP15_2039 at 2138.935 kb on + strand, within HP15_2039 at 2138.971 kb on + strand, within HP15_2039 at 2139.030 kb on + strand, within HP15_2039 at 2139.149 kb on + strand, within HP15_2039 at 2140.344 kb on + strand at 2140.344 kb on + strand at 2141.021 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,138,796 - -0.1 2,138,833 + HP15_2039 0.17 -1.4 2,138,904 + HP15_2039 0.32 -0.9 2,138,935 + HP15_2039 0.39 -0.3 2,138,971 + HP15_2039 0.47 -1.9 2,139,030 + HP15_2039 0.60 -2.3 2,139,149 + HP15_2039 0.85 +2.7 2,140,344 + +0.5 2,140,344 + +0.5 2,141,021 + +0.7
Or see this region's nucleotide sequence