Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2014 and HP15_2015 are separated by 135 nucleotides HP15_2015 and HP15_2016 are separated by 101 nucleotides HP15_2016 and HP15_2017 overlap by 4 nucleotides
HP15_2014: HP15_2014 - extracellular ligand-binding receptor, at 2,114,775 to 2,116,163
_2014
HP15_2015: HP15_2015 - inner-membrane translocator, at 2,116,299 to 2,117,195
_2015
HP15_2016: HP15_2016 - inner-membrane translocator, at 2,117,297 to 2,118,145
_2016
HP15_2017: HP15_2017 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,118,142 to 2,118,945
_2017
Position (kb)
2116
2117
2118 Strain fitness (log2 ratio)
-2
-1
0
1 at 2115.432 kb on + strand, within HP15_2014 at 2115.546 kb on + strand, within HP15_2014 at 2115.554 kb on - strand, within HP15_2014 at 2115.594 kb on - strand, within HP15_2014 at 2115.649 kb on - strand, within HP15_2014 at 2115.702 kb on + strand, within HP15_2014 at 2115.726 kb on - strand, within HP15_2014 at 2115.862 kb on - strand, within HP15_2014 at 2115.885 kb on - strand, within HP15_2014 at 2115.885 kb on - strand, within HP15_2014 at 2115.904 kb on + strand, within HP15_2014 at 2115.904 kb on + strand, within HP15_2014 at 2115.912 kb on - strand, within HP15_2014 at 2115.937 kb on + strand, within HP15_2014 at 2116.031 kb on + strand at 2116.117 kb on + strand at 2116.125 kb on - strand at 2116.154 kb on + strand at 2116.162 kb on - strand at 2116.265 kb on + strand at 2116.342 kb on + strand at 2116.547 kb on + strand, within HP15_2015 at 2116.559 kb on + strand, within HP15_2015 at 2116.567 kb on - strand, within HP15_2015 at 2116.615 kb on + strand, within HP15_2015 at 2116.631 kb on + strand, within HP15_2015 at 2116.639 kb on - strand, within HP15_2015 at 2116.696 kb on - strand, within HP15_2015 at 2116.697 kb on - strand, within HP15_2015 at 2116.703 kb on + strand, within HP15_2015 at 2116.785 kb on + strand, within HP15_2015 at 2116.797 kb on - strand, within HP15_2015 at 2116.797 kb on - strand, within HP15_2015 at 2116.848 kb on + strand, within HP15_2015 at 2116.975 kb on + strand, within HP15_2015 at 2117.109 kb on - strand at 2117.127 kb on + strand at 2117.300 kb on + strand at 2117.307 kb on + strand at 2117.307 kb on + strand at 2117.308 kb on - strand at 2117.308 kb on - strand at 2117.322 kb on + strand at 2117.363 kb on - strand at 2117.377 kb on - strand at 2117.421 kb on - strand, within HP15_2016 at 2117.801 kb on - strand, within HP15_2016 at 2117.801 kb on - strand, within HP15_2016 at 2117.857 kb on + strand, within HP15_2016 at 2117.944 kb on - strand, within HP15_2016 at 2118.026 kb on + strand, within HP15_2016 at 2118.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,115,432 + HP15_2014 0.47 -0.9 2,115,546 + HP15_2014 0.56 -0.6 2,115,554 - HP15_2014 0.56 -0.7 2,115,594 - HP15_2014 0.59 +0.5 2,115,649 - HP15_2014 0.63 -0.1 2,115,702 + HP15_2014 0.67 -1.2 2,115,726 - HP15_2014 0.68 +0.1 2,115,862 - HP15_2014 0.78 -0.7 2,115,885 - HP15_2014 0.80 -0.1 2,115,885 - HP15_2014 0.80 +0.6 2,115,904 + HP15_2014 0.81 +0.2 2,115,904 + HP15_2014 0.81 -2.4 2,115,912 - HP15_2014 0.82 +0.3 2,115,937 + HP15_2014 0.84 -0.6 2,116,031 + +0.1 2,116,117 + +0.3 2,116,125 - +1.2 2,116,154 + -1.2 2,116,162 - -1.5 2,116,265 + -0.4 2,116,342 + -0.0 2,116,547 + HP15_2015 0.28 -0.5 2,116,559 + HP15_2015 0.29 +0.7 2,116,567 - HP15_2015 0.30 -0.2 2,116,615 + HP15_2015 0.35 +0.0 2,116,631 + HP15_2015 0.37 -1.1 2,116,639 - HP15_2015 0.38 -1.9 2,116,696 - HP15_2015 0.44 +0.1 2,116,697 - HP15_2015 0.44 -2.7 2,116,703 + HP15_2015 0.45 -1.3 2,116,785 + HP15_2015 0.54 -0.9 2,116,797 - HP15_2015 0.56 -0.7 2,116,797 - HP15_2015 0.56 -2.4 2,116,848 + HP15_2015 0.61 +0.2 2,116,975 + HP15_2015 0.75 -0.4 2,117,109 - -0.2 2,117,127 + -0.1 2,117,300 + -0.0 2,117,307 + -0.4 2,117,307 + -1.4 2,117,308 - +0.2 2,117,308 - +0.5 2,117,322 + +0.6 2,117,363 - +0.3 2,117,377 - -0.6 2,117,421 - HP15_2016 0.15 +0.0 2,117,801 - HP15_2016 0.59 -0.7 2,117,801 - HP15_2016 0.59 -0.7 2,117,857 + HP15_2016 0.66 +0.4 2,117,944 - HP15_2016 0.76 -1.4 2,118,026 + HP15_2016 0.86 +0.9 2,118,092 + -0.7
Or see this region's nucleotide sequence