Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1976 and HP15_1977 are separated by 15 nucleotides HP15_1977 and HP15_1978 are separated by 517 nucleotides HP15_1978 and HP15_1979 are separated by 335 nucleotides
HP15_1976: HP15_1976 - hypothetical protein, at 2,091,689 to 2,092,069
_1976
HP15_1977: HP15_1977 - hypothetical protein, at 2,092,085 to 2,092,240
_1977
HP15_1978: HP15_1978 - phage antitermination Q type 1 family-like protein, at 2,092,758 to 2,093,078
_1978
HP15_1979: HP15_1979 - conserved hypothetical protein, at 2,093,414 to 2,094,997
_1979
Position (kb)
2092
2093
2094 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2091.787 kb on + strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.807 kb on + strand, within HP15_1976 at 2091.975 kb on + strand, within HP15_1976 at 2091.975 kb on + strand, within HP15_1976 at 2091.975 kb on + strand, within HP15_1976 at 2091.976 kb on - strand, within HP15_1976 at 2091.983 kb on - strand, within HP15_1976 at 2092.016 kb on - strand, within HP15_1976 at 2092.018 kb on + strand, within HP15_1976 at 2092.018 kb on + strand, within HP15_1976 at 2092.088 kb on - strand at 2092.198 kb on - strand, within HP15_1977 at 2092.199 kb on - strand, within HP15_1977 at 2092.445 kb on + strand at 2092.453 kb on - strand at 2092.594 kb on + strand at 2092.699 kb on + strand at 2092.705 kb on + strand at 2092.713 kb on - strand at 2092.713 kb on - strand at 2092.779 kb on + strand at 2092.785 kb on + strand at 2092.787 kb on + strand at 2092.795 kb on - strand, within HP15_1978 at 2092.795 kb on - strand, within HP15_1978 at 2092.901 kb on - strand, within HP15_1978 at 2092.901 kb on - strand, within HP15_1978 at 2092.972 kb on - strand, within HP15_1978 at 2093.041 kb on - strand, within HP15_1978 at 2093.046 kb on + strand, within HP15_1978 at 2093.046 kb on + strand, within HP15_1978 at 2093.047 kb on - strand at 2093.049 kb on - strand at 2093.114 kb on + strand at 2093.115 kb on + strand at 2093.207 kb on - strand at 2093.265 kb on - strand at 2093.302 kb on - strand at 2093.306 kb on - strand at 2093.371 kb on + strand at 2093.372 kb on + strand at 2093.377 kb on + strand at 2093.380 kb on - strand at 2093.382 kb on + strand at 2093.387 kb on + strand at 2093.395 kb on - strand at 2093.411 kb on - strand at 2093.530 kb on + strand at 2093.609 kb on - strand, within HP15_1979 at 2093.618 kb on + strand, within HP15_1979 at 2093.670 kb on + strand, within HP15_1979 at 2093.698 kb on - strand, within HP15_1979 at 2093.725 kb on + strand, within HP15_1979 at 2093.876 kb on + strand, within HP15_1979 at 2094.029 kb on + strand, within HP15_1979 at 2094.034 kb on + strand, within HP15_1979 at 2094.042 kb on - strand, within HP15_1979
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,091,787 + HP15_1976 0.26 +0.7 2,091,795 - HP15_1976 0.28 -0.3 2,091,795 - HP15_1976 0.28 +0.5 2,091,795 - HP15_1976 0.28 +0.6 2,091,795 - HP15_1976 0.28 +1.3 2,091,807 + HP15_1976 0.31 +0.3 2,091,975 + HP15_1976 0.75 +2.2 2,091,975 + HP15_1976 0.75 +0.7 2,091,975 + HP15_1976 0.75 +1.7 2,091,976 - HP15_1976 0.75 +0.7 2,091,983 - HP15_1976 0.77 +0.9 2,092,016 - HP15_1976 0.86 +2.6 2,092,018 + HP15_1976 0.86 +0.9 2,092,018 + HP15_1976 0.86 +2.2 2,092,088 - +1.3 2,092,198 - HP15_1977 0.72 +0.5 2,092,199 - HP15_1977 0.73 +0.4 2,092,445 + +0.8 2,092,453 - +0.4 2,092,594 + +0.7 2,092,699 + -0.3 2,092,705 + +0.1 2,092,713 - +0.8 2,092,713 - +0.8 2,092,779 + +0.1 2,092,785 + +1.2 2,092,787 + -0.5 2,092,795 - HP15_1978 0.12 +1.8 2,092,795 - HP15_1978 0.12 +0.4 2,092,901 - HP15_1978 0.45 +0.1 2,092,901 - HP15_1978 0.45 +0.7 2,092,972 - HP15_1978 0.67 -0.4 2,093,041 - HP15_1978 0.88 +0.6 2,093,046 + HP15_1978 0.90 +0.1 2,093,046 + HP15_1978 0.90 +0.8 2,093,047 - -0.0 2,093,049 - +0.4 2,093,114 + +0.4 2,093,115 + -1.3 2,093,207 - +0.1 2,093,265 - -0.8 2,093,302 - -2.0 2,093,306 - +0.3 2,093,371 + -0.5 2,093,372 + +0.7 2,093,377 + -0.8 2,093,380 - +0.6 2,093,382 + +2.2 2,093,387 + -0.1 2,093,395 - -0.6 2,093,411 - +1.0 2,093,530 + +0.4 2,093,609 - HP15_1979 0.12 +0.2 2,093,618 + HP15_1979 0.13 +2.0 2,093,670 + HP15_1979 0.16 +0.3 2,093,698 - HP15_1979 0.18 +0.3 2,093,725 + HP15_1979 0.20 +0.4 2,093,876 + HP15_1979 0.29 -0.2 2,094,029 + HP15_1979 0.39 +0.7 2,094,034 + HP15_1979 0.39 +0.4 2,094,042 - HP15_1979 0.40 +0.2
Or see this region's nucleotide sequence