Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_200 and HP15_201 are separated by 89 nucleotides HP15_201 and HP15_202 overlap by 4 nucleotides HP15_202 and HP15_203 are separated by 4 nucleotides
HP15_200: HP15_200 - peptide ABC transporter, periplasmic peptide-binding protein, at 186,877 to 188,472
_200
HP15_201: HP15_201 - peptide transport system permease ABC transporter protein, at 188,562 to 189,599
_201
HP15_202: HP15_202 - oligopeptide/dipeptide ABC transporter, permease protein, at 189,596 to 190,528
_202
HP15_203: HP15_203 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 190,533 to 191,531
_203
Position (kb) 188
189
190 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 187.756 kb on - strand, within HP15_200 at 187.895 kb on + strand, within HP15_200 at 187.902 kb on - strand, within HP15_200 at 187.929 kb on + strand, within HP15_200 at 187.937 kb on - strand, within HP15_200 at 187.947 kb on + strand, within HP15_200 at 188.072 kb on - strand, within HP15_200 at 188.096 kb on - strand, within HP15_200 at 188.100 kb on + strand, within HP15_200 at 188.100 kb on + strand, within HP15_200 at 188.103 kb on - strand, within HP15_200 at 188.161 kb on + strand, within HP15_200 at 188.219 kb on + strand, within HP15_200 at 188.224 kb on + strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.309 kb on - strand, within HP15_200 at 188.309 kb on - strand, within HP15_200 at 188.375 kb on + strand at 188.383 kb on - strand at 188.441 kb on + strand at 188.449 kb on - strand at 188.501 kb on - strand at 188.538 kb on - strand at 188.552 kb on - strand at 188.634 kb on + strand at 188.658 kb on + strand at 188.684 kb on + strand, within HP15_201 at 188.956 kb on - strand, within HP15_201 at 189.013 kb on + strand, within HP15_201 at 189.013 kb on - strand, within HP15_201 at 189.021 kb on - strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.221 kb on + strand, within HP15_201 at 189.239 kb on + strand, within HP15_201 at 189.293 kb on + strand, within HP15_201 at 189.325 kb on - strand, within HP15_201 at 189.338 kb on + strand, within HP15_201 at 189.344 kb on - strand, within HP15_201 at 189.393 kb on - strand, within HP15_201 at 189.441 kb on + strand, within HP15_201 at 189.504 kb on - strand at 189.556 kb on + strand at 189.568 kb on - strand at 189.571 kb on - strand at 189.766 kb on + strand, within HP15_202 at 189.774 kb on - strand, within HP15_202 at 189.774 kb on - strand, within HP15_202 at 189.859 kb on + strand, within HP15_202 at 189.984 kb on - strand, within HP15_202 at 190.057 kb on + strand, within HP15_202 at 190.057 kb on + strand, within HP15_202 at 190.065 kb on - strand, within HP15_202 at 190.065 kb on - strand, within HP15_202 at 190.138 kb on + strand, within HP15_202 at 190.157 kb on + strand, within HP15_202 at 190.300 kb on - strand, within HP15_202 at 190.375 kb on - strand, within HP15_202 at 190.421 kb on - strand, within HP15_202 at 190.506 kb on + strand at 190.506 kb on + strand at 190.523 kb on + strand at 190.524 kb on - strand at 190.531 kb on + strand at 190.531 kb on - strand at 190.539 kb on - strand at 190.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 187,756 - HP15_200 0.55 +0.7 187,895 + HP15_200 0.64 +1.2 187,902 - HP15_200 0.64 +1.1 187,929 + HP15_200 0.66 +0.7 187,937 - HP15_200 0.66 +0.2 187,947 + HP15_200 0.67 -0.7 188,072 - HP15_200 0.75 +0.6 188,096 - HP15_200 0.76 -0.0 188,100 + HP15_200 0.77 +1.0 188,100 + HP15_200 0.77 +1.1 188,103 - HP15_200 0.77 +1.0 188,161 + HP15_200 0.80 +3.0 188,219 + HP15_200 0.84 +1.1 188,224 + HP15_200 0.84 +0.9 188,232 - HP15_200 0.85 +2.2 188,232 - HP15_200 0.85 +0.6 188,232 - HP15_200 0.85 +1.5 188,309 - HP15_200 0.90 -0.2 188,309 - HP15_200 0.90 +0.9 188,375 + +0.0 188,383 - +1.1 188,441 + +0.9 188,449 - +0.6 188,501 - +4.8 188,538 - +0.9 188,552 - +0.9 188,634 + +1.6 188,658 + +3.9 188,684 + HP15_201 0.12 +0.5 188,956 - HP15_201 0.38 +2.5 189,013 + HP15_201 0.43 +0.4 189,013 - HP15_201 0.43 +0.3 189,021 - HP15_201 0.44 +1.1 189,166 + HP15_201 0.58 +2.2 189,166 + HP15_201 0.58 +0.6 189,174 - HP15_201 0.59 +2.1 189,174 - HP15_201 0.59 +1.0 189,221 + HP15_201 0.63 +0.5 189,239 + HP15_201 0.65 +0.9 189,293 + HP15_201 0.70 +0.3 189,325 - HP15_201 0.74 +1.7 189,338 + HP15_201 0.75 +0.7 189,344 - HP15_201 0.75 +0.9 189,393 - HP15_201 0.80 -0.6 189,441 + HP15_201 0.85 +1.5 189,504 - +1.7 189,556 + +1.6 189,568 - -1.0 189,571 - +0.7 189,766 + HP15_202 0.18 +0.7 189,774 - HP15_202 0.19 +0.3 189,774 - HP15_202 0.19 +0.6 189,859 + HP15_202 0.28 +0.7 189,984 - HP15_202 0.42 +0.7 190,057 + HP15_202 0.49 +1.2 190,057 + HP15_202 0.49 +0.8 190,065 - HP15_202 0.50 +0.5 190,065 - HP15_202 0.50 +0.8 190,138 + HP15_202 0.58 +0.5 190,157 + HP15_202 0.60 +1.1 190,300 - HP15_202 0.75 +1.1 190,375 - HP15_202 0.83 +2.0 190,421 - HP15_202 0.88 +0.6 190,506 + +1.7 190,506 + +0.3 190,523 + -0.4 190,524 - +0.5 190,531 + -0.1 190,531 - +0.6 190,539 - +0.4 190,582 + +0.9
Or see this region's nucleotide sequence