Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1971 and HP15_1972 are separated by 254 nucleotides HP15_1972 and HP15_1973 overlap by 11 nucleotides HP15_1973 and HP15_1974 are separated by 1 nucleotides HP15_1974 and HP15_1975 overlap by 4 nucleotides HP15_1975 and HP15_1976 are separated by 107 nucleotides
HP15_1971: HP15_1971 - hypothetical protein, at 2,088,630 to 2,089,514
_1971
HP15_1972: HP15_1972 - fibronectin, type III domain protein-like protein, at 2,089,769 to 2,090,875
_1972
HP15_1973: HP15_1973 - hypothetical protein, at 2,090,865 to 2,090,984
_1973
HP15_1974: HP15_1974 - hypothetical protein, at 2,090,986 to 2,091,447
_1974
HP15_1975: HP15_1975 - conserved hypothetical protein, at 2,091,444 to 2,091,581
_1975
HP15_1976: HP15_1976 - hypothetical protein, at 2,091,689 to 2,092,069
_1976
Position (kb)
2089
2090
2091 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 2088.854 kb on + strand, within HP15_1971 at 2088.954 kb on - strand, within HP15_1971 at 2088.954 kb on - strand, within HP15_1971 at 2088.966 kb on - strand, within HP15_1971 at 2089.026 kb on + strand, within HP15_1971 at 2089.026 kb on + strand, within HP15_1971 at 2089.103 kb on - strand, within HP15_1971 at 2089.122 kb on + strand, within HP15_1971 at 2089.122 kb on + strand, within HP15_1971 at 2089.156 kb on + strand, within HP15_1971 at 2089.164 kb on - strand, within HP15_1971 at 2089.170 kb on + strand, within HP15_1971 at 2089.183 kb on + strand, within HP15_1971 at 2089.247 kb on + strand, within HP15_1971 at 2089.308 kb on + strand, within HP15_1971 at 2089.374 kb on - strand, within HP15_1971 at 2089.410 kb on - strand, within HP15_1971 at 2089.547 kb on + strand at 2089.547 kb on + strand at 2089.555 kb on - strand at 2089.731 kb on + strand at 2089.756 kb on - strand at 2089.791 kb on - strand at 2089.793 kb on + strand at 2089.801 kb on - strand at 2089.843 kb on - strand at 2089.863 kb on + strand at 2089.885 kb on + strand, within HP15_1972 at 2089.893 kb on - strand, within HP15_1972 at 2089.893 kb on - strand, within HP15_1972 at 2089.968 kb on + strand, within HP15_1972 at 2090.083 kb on + strand, within HP15_1972 at 2090.083 kb on + strand, within HP15_1972 at 2090.083 kb on + strand, within HP15_1972 at 2090.091 kb on - strand, within HP15_1972 at 2090.091 kb on - strand, within HP15_1972 at 2090.124 kb on - strand, within HP15_1972 at 2090.344 kb on + strand, within HP15_1972 at 2090.362 kb on - strand, within HP15_1972 at 2090.559 kb on - strand, within HP15_1972 at 2090.573 kb on + strand, within HP15_1972 at 2090.695 kb on - strand, within HP15_1972 at 2090.775 kb on + strand at 2090.777 kb on + strand at 2090.783 kb on - strand at 2090.783 kb on - strand at 2090.783 kb on - strand at 2090.809 kb on - strand at 2090.828 kb on - strand at 2090.931 kb on - strand, within HP15_1973 at 2090.958 kb on + strand, within HP15_1973 at 2091.104 kb on + strand, within HP15_1974 at 2091.241 kb on - strand, within HP15_1974 at 2091.252 kb on + strand, within HP15_1974 at 2091.463 kb on + strand, within HP15_1975 at 2091.471 kb on - strand, within HP15_1975 at 2091.615 kb on + strand at 2091.660 kb on + strand at 2091.665 kb on + strand at 2091.673 kb on - strand at 2091.738 kb on + strand, within HP15_1976 at 2091.738 kb on + strand, within HP15_1976 at 2091.738 kb on + strand, within HP15_1976 at 2091.787 kb on + strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.795 kb on - strand, within HP15_1976 at 2091.807 kb on + strand, within HP15_1976
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,088,854 + HP15_1971 0.25 -0.7 2,088,954 - HP15_1971 0.37 +1.1 2,088,954 - HP15_1971 0.37 +6.5 2,088,966 - HP15_1971 0.38 +1.1 2,089,026 + HP15_1971 0.45 +0.6 2,089,026 + HP15_1971 0.45 +1.1 2,089,103 - HP15_1971 0.53 +0.8 2,089,122 + HP15_1971 0.56 +1.4 2,089,122 + HP15_1971 0.56 +0.4 2,089,156 + HP15_1971 0.59 +1.4 2,089,164 - HP15_1971 0.60 +0.7 2,089,170 + HP15_1971 0.61 +1.1 2,089,183 + HP15_1971 0.62 +2.0 2,089,247 + HP15_1971 0.70 +0.6 2,089,308 + HP15_1971 0.77 +0.8 2,089,374 - HP15_1971 0.84 +0.7 2,089,410 - HP15_1971 0.88 +0.7 2,089,547 + +0.4 2,089,547 + -1.9 2,089,555 - +1.5 2,089,731 + +0.1 2,089,756 - +0.4 2,089,791 - +1.6 2,089,793 + +0.7 2,089,801 - +0.6 2,089,843 - +0.2 2,089,863 + +0.9 2,089,885 + HP15_1972 0.10 +0.5 2,089,893 - HP15_1972 0.11 +0.9 2,089,893 - HP15_1972 0.11 +0.8 2,089,968 + HP15_1972 0.18 +1.9 2,090,083 + HP15_1972 0.28 +2.4 2,090,083 + HP15_1972 0.28 +2.0 2,090,083 + HP15_1972 0.28 +0.2 2,090,091 - HP15_1972 0.29 +0.8 2,090,091 - HP15_1972 0.29 +1.4 2,090,124 - HP15_1972 0.32 +1.3 2,090,344 + HP15_1972 0.52 +0.7 2,090,362 - HP15_1972 0.54 +1.2 2,090,559 - HP15_1972 0.71 +1.1 2,090,573 + HP15_1972 0.73 +0.3 2,090,695 - HP15_1972 0.84 +1.4 2,090,775 + +0.8 2,090,777 + +1.5 2,090,783 - +1.0 2,090,783 - +1.1 2,090,783 - +0.3 2,090,809 - +0.3 2,090,828 - +1.4 2,090,931 - HP15_1973 0.55 +1.5 2,090,958 + HP15_1973 0.78 +0.7 2,091,104 + HP15_1974 0.26 +1.2 2,091,241 - HP15_1974 0.55 +1.4 2,091,252 + HP15_1974 0.58 +1.8 2,091,463 + HP15_1975 0.14 -0.8 2,091,471 - HP15_1975 0.20 +1.0 2,091,615 + +0.5 2,091,660 + +1.0 2,091,665 + +1.4 2,091,673 - +2.2 2,091,738 + HP15_1976 0.13 +0.1 2,091,738 + HP15_1976 0.13 +1.2 2,091,738 + HP15_1976 0.13 +1.1 2,091,787 + HP15_1976 0.26 +0.7 2,091,795 - HP15_1976 0.28 -0.3 2,091,795 - HP15_1976 0.28 +0.5 2,091,795 - HP15_1976 0.28 +0.6 2,091,795 - HP15_1976 0.28 +1.3 2,091,807 + HP15_1976 0.31 +0.3
Or see this region's nucleotide sequence