Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1968 and HP15_1969 are separated by 116 nucleotides HP15_1969 and HP15_1970 are separated by 251 nucleotides HP15_1970 and HP15_1971 overlap by 1 nucleotides
HP15_1968: HP15_1968 - phage DNA packaging protein, Nu1 subunit of terminase, at 2,086,092 to 2,086,610
_1968
HP15_1969: HP15_1969 - hypothetical protein, at 2,086,727 to 2,086,831
_1969
HP15_1970: HP15_1970 - hypothetical protein, at 2,087,083 to 2,088,630
_1970
HP15_1971: HP15_1971 - hypothetical protein, at 2,088,630 to 2,089,514
_1971
Position (kb)
2087
2088
2089 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 2086.116 kb on + strand at 2086.133 kb on + strand at 2086.133 kb on + strand at 2086.141 kb on - strand at 2086.291 kb on - strand, within HP15_1968 at 2086.329 kb on - strand, within HP15_1968 at 2086.387 kb on + strand, within HP15_1968 at 2086.507 kb on + strand, within HP15_1968 at 2086.644 kb on + strand at 2086.652 kb on - strand at 2086.652 kb on - strand at 2086.693 kb on + strand at 2086.788 kb on + strand, within HP15_1969 at 2086.815 kb on + strand, within HP15_1969 at 2086.833 kb on + strand at 2086.846 kb on - strand at 2086.847 kb on - strand at 2086.847 kb on - strand at 2086.926 kb on - strand at 2086.928 kb on + strand at 2087.053 kb on + strand at 2087.053 kb on + strand at 2087.075 kb on - strand at 2087.087 kb on - strand at 2087.108 kb on + strand at 2087.130 kb on - strand at 2087.140 kb on - strand at 2087.175 kb on + strand at 2087.175 kb on + strand at 2087.183 kb on - strand at 2087.183 kb on - strand at 2087.183 kb on - strand at 2087.183 kb on - strand at 2087.299 kb on + strand, within HP15_1970 at 2087.304 kb on + strand, within HP15_1970 at 2087.304 kb on + strand, within HP15_1970 at 2087.314 kb on - strand, within HP15_1970 at 2087.323 kb on + strand, within HP15_1970 at 2087.351 kb on - strand, within HP15_1970 at 2087.357 kb on - strand, within HP15_1970 at 2087.390 kb on + strand, within HP15_1970 at 2087.392 kb on + strand, within HP15_1970 at 2087.478 kb on - strand, within HP15_1970 at 2087.558 kb on - strand, within HP15_1970 at 2087.693 kb on + strand, within HP15_1970 at 2087.772 kb on + strand, within HP15_1970 at 2087.826 kb on - strand, within HP15_1970 at 2087.881 kb on + strand, within HP15_1970 at 2087.938 kb on + strand, within HP15_1970 at 2087.948 kb on + strand, within HP15_1970 at 2087.975 kb on - strand, within HP15_1970 at 2087.975 kb on - strand, within HP15_1970 at 2088.128 kb on + strand, within HP15_1970 at 2088.136 kb on - strand, within HP15_1970 at 2088.243 kb on + strand, within HP15_1970 at 2088.273 kb on + strand, within HP15_1970 at 2088.281 kb on - strand, within HP15_1970 at 2088.301 kb on - strand, within HP15_1970 at 2088.301 kb on - strand, within HP15_1970 at 2088.304 kb on + strand, within HP15_1970 at 2088.316 kb on + strand, within HP15_1970 at 2088.517 kb on - strand at 2088.594 kb on + strand at 2088.647 kb on - strand at 2088.724 kb on - strand, within HP15_1971 at 2088.854 kb on + strand, within HP15_1971 at 2088.954 kb on - strand, within HP15_1971 at 2088.954 kb on - strand, within HP15_1971 at 2088.966 kb on - strand, within HP15_1971 at 2089.026 kb on + strand, within HP15_1971 at 2089.026 kb on + strand, within HP15_1971 at 2089.103 kb on - strand, within HP15_1971 at 2089.122 kb on + strand, within HP15_1971 at 2089.122 kb on + strand, within HP15_1971 at 2089.156 kb on + strand, within HP15_1971 at 2089.164 kb on - strand, within HP15_1971 at 2089.170 kb on + strand, within HP15_1971 at 2089.183 kb on + strand, within HP15_1971 at 2089.247 kb on + strand, within HP15_1971 at 2089.308 kb on + strand, within HP15_1971 at 2089.374 kb on - strand, within HP15_1971 at 2089.410 kb on - strand, within HP15_1971 at 2089.547 kb on + strand at 2089.547 kb on + strand at 2089.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,086,116 + +1.3 2,086,133 + +0.7 2,086,133 + +0.4 2,086,141 - +1.0 2,086,291 - HP15_1968 0.38 -0.9 2,086,329 - HP15_1968 0.46 -0.7 2,086,387 + HP15_1968 0.57 +1.0 2,086,507 + HP15_1968 0.80 -0.2 2,086,644 + +0.7 2,086,652 - +0.5 2,086,652 - +0.7 2,086,693 + +0.4 2,086,788 + HP15_1969 0.58 +1.3 2,086,815 + HP15_1969 0.84 +1.2 2,086,833 + +1.2 2,086,846 - +1.3 2,086,847 - +1.5 2,086,847 - +0.9 2,086,926 - +1.0 2,086,928 + +0.9 2,087,053 + +1.5 2,087,053 + -0.1 2,087,075 - +1.0 2,087,087 - +0.9 2,087,108 + +1.9 2,087,130 - +1.0 2,087,140 - +1.1 2,087,175 + +1.2 2,087,175 + +1.1 2,087,183 - +2.4 2,087,183 - +1.7 2,087,183 - +0.7 2,087,183 - +0.9 2,087,299 + HP15_1970 0.14 +2.2 2,087,304 + HP15_1970 0.14 +0.7 2,087,304 + HP15_1970 0.14 +0.1 2,087,314 - HP15_1970 0.15 +0.5 2,087,323 + HP15_1970 0.16 +0.3 2,087,351 - HP15_1970 0.17 +1.7 2,087,357 - HP15_1970 0.18 +0.6 2,087,390 + HP15_1970 0.20 -0.2 2,087,392 + HP15_1970 0.20 +0.7 2,087,478 - HP15_1970 0.26 +0.4 2,087,558 - HP15_1970 0.31 -0.6 2,087,693 + HP15_1970 0.39 +1.0 2,087,772 + HP15_1970 0.45 +1.8 2,087,826 - HP15_1970 0.48 +1.4 2,087,881 + HP15_1970 0.52 +1.4 2,087,938 + HP15_1970 0.55 +1.8 2,087,948 + HP15_1970 0.56 +0.6 2,087,975 - HP15_1970 0.58 +1.2 2,087,975 - HP15_1970 0.58 +1.0 2,088,128 + HP15_1970 0.68 +1.1 2,088,136 - HP15_1970 0.68 +1.7 2,088,243 + HP15_1970 0.75 +0.7 2,088,273 + HP15_1970 0.77 +1.2 2,088,281 - HP15_1970 0.77 +1.1 2,088,301 - HP15_1970 0.79 +1.0 2,088,301 - HP15_1970 0.79 +1.1 2,088,304 + HP15_1970 0.79 +0.4 2,088,316 + HP15_1970 0.80 +0.9 2,088,517 - +0.7 2,088,594 + +1.1 2,088,647 - +0.7 2,088,724 - HP15_1971 0.11 +2.3 2,088,854 + HP15_1971 0.25 -0.7 2,088,954 - HP15_1971 0.37 +1.1 2,088,954 - HP15_1971 0.37 +6.5 2,088,966 - HP15_1971 0.38 +1.1 2,089,026 + HP15_1971 0.45 +0.6 2,089,026 + HP15_1971 0.45 +1.1 2,089,103 - HP15_1971 0.53 +0.8 2,089,122 + HP15_1971 0.56 +1.4 2,089,122 + HP15_1971 0.56 +0.4 2,089,156 + HP15_1971 0.59 +1.4 2,089,164 - HP15_1971 0.60 +0.7 2,089,170 + HP15_1971 0.61 +1.1 2,089,183 + HP15_1971 0.62 +2.0 2,089,247 + HP15_1971 0.70 +0.6 2,089,308 + HP15_1971 0.77 +0.8 2,089,374 - HP15_1971 0.84 +0.7 2,089,410 - HP15_1971 0.88 +0.7 2,089,547 + +0.4 2,089,547 + -1.9 2,089,555 - +1.5
Or see this region's nucleotide sequence