Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1965 and HP15_1966 overlap by 4 nucleotides HP15_1966 and HP15_1967 overlap by 4 nucleotides HP15_1967 and HP15_1968 are separated by 79 nucleotides HP15_1968 and HP15_1969 are separated by 116 nucleotides
HP15_1965: HP15_1965 - phage portal protein, lambda family, at 2,082,382 to 2,083,980
_1965
HP15_1966: HP15_1966 - head-to-tail joining protein W, GpW, at 2,083,977 to 2,084,183
_1966
HP15_1967: HP15_1967 - phage terminase large subunit (GpA), at 2,084,180 to 2,086,012
_1967
HP15_1968: HP15_1968 - phage DNA packaging protein, Nu1 subunit of terminase, at 2,086,092 to 2,086,610
_1968
HP15_1969: HP15_1969 - hypothetical protein, at 2,086,727 to 2,086,831
_1969
Position (kb)
2084
2085
2086
2087 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2083.185 kb on + strand, within HP15_1965 at 2083.200 kb on + strand, within HP15_1965 at 2083.244 kb on - strand, within HP15_1965 at 2083.297 kb on + strand, within HP15_1965 at 2083.405 kb on - strand, within HP15_1965 at 2083.424 kb on - strand, within HP15_1965 at 2083.460 kb on - strand, within HP15_1965 at 2083.469 kb on + strand, within HP15_1965 at 2083.669 kb on + strand, within HP15_1965 at 2083.677 kb on - strand, within HP15_1965 at 2083.683 kb on - strand, within HP15_1965 at 2083.688 kb on - strand, within HP15_1965 at 2083.695 kb on - strand, within HP15_1965 at 2083.724 kb on + strand, within HP15_1965 at 2083.782 kb on + strand, within HP15_1965 at 2083.782 kb on + strand, within HP15_1965 at 2083.864 kb on - strand at 2083.877 kb on + strand at 2083.897 kb on + strand at 2083.905 kb on - strand at 2084.143 kb on - strand, within HP15_1966 at 2084.265 kb on - strand at 2084.265 kb on - strand at 2084.292 kb on + strand at 2084.331 kb on - strand at 2084.395 kb on - strand, within HP15_1967 at 2084.410 kb on - strand, within HP15_1967 at 2084.430 kb on - strand, within HP15_1967 at 2084.477 kb on + strand, within HP15_1967 at 2084.544 kb on - strand, within HP15_1967 at 2084.580 kb on + strand, within HP15_1967 at 2084.707 kb on - strand, within HP15_1967 at 2084.772 kb on - strand, within HP15_1967 at 2084.818 kb on - strand, within HP15_1967 at 2084.888 kb on - strand, within HP15_1967 at 2085.060 kb on - strand, within HP15_1967 at 2085.072 kb on - strand, within HP15_1967 at 2085.101 kb on - strand, within HP15_1967 at 2085.170 kb on + strand, within HP15_1967 at 2085.170 kb on + strand, within HP15_1967 at 2085.178 kb on - strand, within HP15_1967 at 2085.216 kb on - strand, within HP15_1967 at 2085.225 kb on + strand, within HP15_1967 at 2085.230 kb on + strand, within HP15_1967 at 2085.299 kb on - strand, within HP15_1967 at 2085.523 kb on + strand, within HP15_1967 at 2085.526 kb on - strand, within HP15_1967 at 2085.531 kb on + strand, within HP15_1967 at 2085.635 kb on - strand, within HP15_1967 at 2085.659 kb on - strand, within HP15_1967 at 2085.659 kb on - strand, within HP15_1967 at 2085.751 kb on + strand, within HP15_1967 at 2085.774 kb on - strand, within HP15_1967 at 2085.953 kb on + strand at 2085.981 kb on + strand at 2086.034 kb on + strand at 2086.034 kb on + strand at 2086.042 kb on - strand at 2086.058 kb on + strand at 2086.061 kb on - strand at 2086.116 kb on + strand at 2086.133 kb on + strand at 2086.133 kb on + strand at 2086.141 kb on - strand at 2086.291 kb on - strand, within HP15_1968 at 2086.329 kb on - strand, within HP15_1968 at 2086.387 kb on + strand, within HP15_1968 at 2086.507 kb on + strand, within HP15_1968 at 2086.644 kb on + strand at 2086.652 kb on - strand at 2086.652 kb on - strand at 2086.693 kb on + strand at 2086.788 kb on + strand, within HP15_1969 at 2086.815 kb on + strand, within HP15_1969 at 2086.833 kb on + strand at 2086.846 kb on - strand at 2086.847 kb on - strand at 2086.847 kb on - strand at 2086.926 kb on - strand at 2086.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,083,185 + HP15_1965 0.50 +0.3 2,083,200 + HP15_1965 0.51 +1.7 2,083,244 - HP15_1965 0.54 +0.5 2,083,297 + HP15_1965 0.57 -0.1 2,083,405 - HP15_1965 0.64 +1.7 2,083,424 - HP15_1965 0.65 +0.6 2,083,460 - HP15_1965 0.67 +0.2 2,083,469 + HP15_1965 0.68 +0.7 2,083,669 + HP15_1965 0.80 +1.1 2,083,677 - HP15_1965 0.81 +0.5 2,083,683 - HP15_1965 0.81 +1.3 2,083,688 - HP15_1965 0.82 +1.4 2,083,695 - HP15_1965 0.82 +0.1 2,083,724 + HP15_1965 0.84 -1.3 2,083,782 + HP15_1965 0.88 -1.3 2,083,782 + HP15_1965 0.88 +0.4 2,083,864 - +0.5 2,083,877 + +0.5 2,083,897 + +0.4 2,083,905 - +1.7 2,084,143 - HP15_1966 0.80 +1.1 2,084,265 - +0.2 2,084,265 - +1.5 2,084,292 + +0.7 2,084,331 - -0.8 2,084,395 - HP15_1967 0.12 +0.8 2,084,410 - HP15_1967 0.13 +0.5 2,084,430 - HP15_1967 0.14 -0.3 2,084,477 + HP15_1967 0.16 +0.1 2,084,544 - HP15_1967 0.20 -0.0 2,084,580 + HP15_1967 0.22 +0.5 2,084,707 - HP15_1967 0.29 +0.8 2,084,772 - HP15_1967 0.32 +2.0 2,084,818 - HP15_1967 0.35 +0.4 2,084,888 - HP15_1967 0.39 +0.5 2,085,060 - HP15_1967 0.48 +1.0 2,085,072 - HP15_1967 0.49 +0.6 2,085,101 - HP15_1967 0.50 +1.6 2,085,170 + HP15_1967 0.54 +0.9 2,085,170 + HP15_1967 0.54 -0.3 2,085,178 - HP15_1967 0.54 -1.3 2,085,216 - HP15_1967 0.57 +0.3 2,085,225 + HP15_1967 0.57 -1.5 2,085,230 + HP15_1967 0.57 -0.7 2,085,299 - HP15_1967 0.61 +0.8 2,085,523 + HP15_1967 0.73 +1.0 2,085,526 - HP15_1967 0.73 -0.7 2,085,531 + HP15_1967 0.74 +0.9 2,085,635 - HP15_1967 0.79 +2.0 2,085,659 - HP15_1967 0.81 +0.1 2,085,659 - HP15_1967 0.81 +0.3 2,085,751 + HP15_1967 0.86 +2.1 2,085,774 - HP15_1967 0.87 +0.3 2,085,953 + +0.7 2,085,981 + +0.9 2,086,034 + +0.0 2,086,034 + +2.8 2,086,042 - +0.2 2,086,058 + -0.1 2,086,061 - +0.5 2,086,116 + +1.3 2,086,133 + +0.7 2,086,133 + +0.4 2,086,141 - +1.0 2,086,291 - HP15_1968 0.38 -0.9 2,086,329 - HP15_1968 0.46 -0.7 2,086,387 + HP15_1968 0.57 +1.0 2,086,507 + HP15_1968 0.80 -0.2 2,086,644 + +0.7 2,086,652 - +0.5 2,086,652 - +0.7 2,086,693 + +0.4 2,086,788 + HP15_1969 0.58 +1.3 2,086,815 + HP15_1969 0.84 +1.2 2,086,833 + +1.2 2,086,846 - +1.3 2,086,847 - +1.5 2,086,847 - +0.9 2,086,926 - +1.0 2,086,928 + +0.9
Or see this region's nucleotide sequence