Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1962 and HP15_1963 are separated by 61 nucleotides HP15_1963 and HP15_1964 are separated by 63 nucleotides
HP15_1962: HP15_1962 - capsid protein of prophage, at 2,079,191 to 2,080,210
_1962
HP15_1963: HP15_1963 - conserved hypothetical protein, at 2,080,272 to 2,080,640
_1963
HP15_1964: HP15_1964 - capsid protein of prophage, at 2,080,704 to 2,082,029
_1964
Position (kb)
2080
2081 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2079.324 kb on + strand, within HP15_1962 at 2079.456 kb on + strand, within HP15_1962 at 2079.466 kb on + strand, within HP15_1962 at 2079.509 kb on - strand, within HP15_1962 at 2079.544 kb on + strand, within HP15_1962 at 2079.652 kb on + strand, within HP15_1962 at 2079.660 kb on - strand, within HP15_1962 at 2079.744 kb on - strand, within HP15_1962 at 2079.813 kb on + strand, within HP15_1962 at 2079.891 kb on + strand, within HP15_1962 at 2080.050 kb on - strand, within HP15_1962 at 2080.189 kb on + strand at 2080.206 kb on + strand at 2080.214 kb on - strand at 2080.221 kb on + strand at 2080.221 kb on + strand at 2080.234 kb on - strand at 2080.330 kb on - strand, within HP15_1963 at 2080.387 kb on - strand, within HP15_1963 at 2080.391 kb on - strand, within HP15_1963 at 2080.448 kb on + strand, within HP15_1963 at 2080.456 kb on - strand, within HP15_1963 at 2080.456 kb on - strand, within HP15_1963 at 2080.548 kb on - strand, within HP15_1963 at 2080.576 kb on - strand, within HP15_1963 at 2080.618 kb on - strand at 2080.618 kb on - strand at 2080.754 kb on + strand at 2080.762 kb on - strand at 2080.765 kb on + strand at 2080.765 kb on + strand at 2080.765 kb on + strand at 2080.765 kb on + strand at 2080.773 kb on - strand at 2080.828 kb on - strand at 2080.845 kb on - strand, within HP15_1964 at 2080.965 kb on + strand, within HP15_1964 at 2081.036 kb on + strand, within HP15_1964 at 2081.053 kb on + strand, within HP15_1964 at 2081.076 kb on - strand, within HP15_1964 at 2081.076 kb on - strand, within HP15_1964 at 2081.076 kb on - strand, within HP15_1964 at 2081.090 kb on + strand, within HP15_1964 at 2081.129 kb on + strand, within HP15_1964 at 2081.165 kb on - strand, within HP15_1964 at 2081.245 kb on + strand, within HP15_1964 at 2081.245 kb on + strand, within HP15_1964 at 2081.253 kb on - strand, within HP15_1964 at 2081.451 kb on - strand, within HP15_1964 at 2081.538 kb on + strand, within HP15_1964 at 2081.544 kb on + strand, within HP15_1964 at 2081.546 kb on - strand, within HP15_1964 at 2081.546 kb on - strand, within HP15_1964 at 2081.546 kb on - strand, within HP15_1964 at 2081.546 kb on - strand, within HP15_1964 at 2081.546 kb on - strand, within HP15_1964 at 2081.557 kb on + strand, within HP15_1964 at 2081.599 kb on - strand, within HP15_1964
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,079,324 + HP15_1962 0.13 -0.8 2,079,456 + HP15_1962 0.26 +0.4 2,079,466 + HP15_1962 0.27 +0.5 2,079,509 - HP15_1962 0.31 +0.1 2,079,544 + HP15_1962 0.35 +0.2 2,079,652 + HP15_1962 0.45 +2.7 2,079,660 - HP15_1962 0.46 +0.4 2,079,744 - HP15_1962 0.54 -0.3 2,079,813 + HP15_1962 0.61 +1.1 2,079,891 + HP15_1962 0.69 +0.4 2,080,050 - HP15_1962 0.84 +0.5 2,080,189 + +0.7 2,080,206 + +0.1 2,080,214 - +0.8 2,080,221 + +0.5 2,080,221 + +0.1 2,080,234 - +1.1 2,080,330 - HP15_1963 0.16 +0.6 2,080,387 - HP15_1963 0.31 +1.2 2,080,391 - HP15_1963 0.32 -3.2 2,080,448 + HP15_1963 0.48 +1.2 2,080,456 - HP15_1963 0.50 +1.0 2,080,456 - HP15_1963 0.50 +0.6 2,080,548 - HP15_1963 0.75 +0.5 2,080,576 - HP15_1963 0.82 +1.7 2,080,618 - +1.5 2,080,618 - +1.5 2,080,754 + +0.8 2,080,762 - +1.5 2,080,765 + +1.7 2,080,765 + +2.9 2,080,765 + +1.3 2,080,765 + +1.1 2,080,773 - +1.8 2,080,828 - +0.1 2,080,845 - HP15_1964 0.11 -0.9 2,080,965 + HP15_1964 0.20 +0.8 2,081,036 + HP15_1964 0.25 +0.6 2,081,053 + HP15_1964 0.26 +0.8 2,081,076 - HP15_1964 0.28 +1.1 2,081,076 - HP15_1964 0.28 -0.3 2,081,076 - HP15_1964 0.28 +1.2 2,081,090 + HP15_1964 0.29 +0.7 2,081,129 + HP15_1964 0.32 +0.7 2,081,165 - HP15_1964 0.35 -0.2 2,081,245 + HP15_1964 0.41 +0.5 2,081,245 + HP15_1964 0.41 +0.8 2,081,253 - HP15_1964 0.41 -0.9 2,081,451 - HP15_1964 0.56 +2.7 2,081,538 + HP15_1964 0.63 +0.4 2,081,544 + HP15_1964 0.63 +0.7 2,081,546 - HP15_1964 0.63 +0.7 2,081,546 - HP15_1964 0.63 +0.7 2,081,546 - HP15_1964 0.63 +0.9 2,081,546 - HP15_1964 0.63 -0.3 2,081,546 - HP15_1964 0.63 +0.5 2,081,557 + HP15_1964 0.64 +0.2 2,081,599 - HP15_1964 0.67 +0.2
Or see this region's nucleotide sequence