Strain Fitness in Marinobacter adhaerens HP15 around HP15_1957

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1955 and HP15_1956 are separated by 164 nucleotidesHP15_1956 and HP15_1957 overlap by 4 nucleotidesHP15_1957 and HP15_1958 are separated by 57 nucleotidesHP15_1958 and HP15_1959 overlap by 1 nucleotides HP15_1955: HP15_1955 - conserved hypothetical protein, secreted, at 2,075,391 to 2,075,807 _1955 HP15_1956: HP15_1956 - hypothetical protein, at 2,075,972 to 2,076,478 _1956 HP15_1957: HP15_1957 - hypothetical protein, at 2,076,475 to 2,077,446 _1957 HP15_1958: HP15_1958 - hypothetical protein, at 2,077,504 to 2,077,914 _1958 HP15_1959: HP15_1959 - conserved hypothetical protein, at 2,077,914 to 2,078,531 _1959 Position (kb) 2076 2077 2078Strain fitness (log2 ratio) -2 -1 0 1 2at 2075.538 kb on + strand, within HP15_1955at 2075.587 kb on + strand, within HP15_1955at 2075.617 kb on - strand, within HP15_1955at 2075.656 kb on - strand, within HP15_1955at 2075.696 kb on - strand, within HP15_1955at 2075.905 kb on + strandat 2075.913 kb on - strandat 2075.970 kb on + strandat 2075.970 kb on + strandat 2075.977 kb on - strandat 2075.988 kb on + strandat 2076.035 kb on - strand, within HP15_1956at 2076.035 kb on - strand, within HP15_1956at 2076.035 kb on - strand, within HP15_1956at 2076.035 kb on - strand, within HP15_1956at 2076.035 kb on - strand, within HP15_1956at 2076.067 kb on + strand, within HP15_1956at 2076.075 kb on - strand, within HP15_1956at 2076.108 kb on + strand, within HP15_1956at 2076.116 kb on - strand, within HP15_1956at 2076.318 kb on + strand, within HP15_1956at 2076.380 kb on - strand, within HP15_1956at 2076.570 kb on - strandat 2076.576 kb on + strand, within HP15_1957at 2076.576 kb on + strand, within HP15_1957at 2076.576 kb on + strand, within HP15_1957at 2076.576 kb on + strand, within HP15_1957at 2076.683 kb on - strand, within HP15_1957at 2076.693 kb on - strand, within HP15_1957at 2076.697 kb on + strand, within HP15_1957at 2076.702 kb on + strand, within HP15_1957at 2076.731 kb on + strand, within HP15_1957at 2076.739 kb on - strand, within HP15_1957at 2076.744 kb on - strand, within HP15_1957at 2076.744 kb on - strand, within HP15_1957at 2076.773 kb on - strand, within HP15_1957at 2076.815 kb on - strand, within HP15_1957at 2076.927 kb on - strand, within HP15_1957at 2077.014 kb on - strand, within HP15_1957at 2077.059 kb on - strand, within HP15_1957at 2077.149 kb on - strand, within HP15_1957at 2077.186 kb on - strand, within HP15_1957at 2077.338 kb on - strand, within HP15_1957at 2077.350 kb on + strandat 2077.442 kb on + strandat 2077.491 kb on - strandat 2077.493 kb on + strandat 2077.522 kb on - strandat 2077.523 kb on - strandat 2077.542 kb on + strandat 2077.550 kb on - strand, within HP15_1958at 2077.581 kb on + strand, within HP15_1958at 2077.581 kb on + strand, within HP15_1958at 2077.581 kb on + strand, within HP15_1958at 2077.589 kb on - strand, within HP15_1958at 2077.594 kb on - strand, within HP15_1958at 2077.639 kb on + strand, within HP15_1958at 2077.639 kb on + strand, within HP15_1958at 2077.646 kb on + strand, within HP15_1958at 2077.647 kb on - strand, within HP15_1958at 2077.658 kb on + strand, within HP15_1958at 2077.688 kb on - strand, within HP15_1958at 2077.734 kb on + strand, within HP15_1958at 2077.742 kb on - strand, within HP15_1958at 2077.837 kb on + strand, within HP15_1958at 2077.875 kb on - strandat 2077.896 kb on + strandat 2078.067 kb on - strand, within HP15_1959at 2078.127 kb on - strand, within HP15_1959at 2078.127 kb on - strand, within HP15_1959at 2078.154 kb on + strand, within HP15_1959at 2078.285 kb on + strand, within HP15_1959at 2078.340 kb on - strand, within HP15_1959at 2078.355 kb on + strand, within HP15_1959at 2078.360 kb on - strand, within HP15_1959at 2078.363 kb on - strand, within HP15_1959at 2078.378 kb on - strand, within HP15_1959at 2078.410 kb on + strand, within HP15_1959

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
2,075,538 + HP15_1955 0.35 +1.2
2,075,587 + HP15_1955 0.47 +0.4
2,075,617 - HP15_1955 0.54 +0.0
2,075,656 - HP15_1955 0.64 +0.5
2,075,696 - HP15_1955 0.73 +0.7
2,075,905 + +0.5
2,075,913 - +0.3
2,075,970 + -0.1
2,075,970 + +1.4
2,075,977 - +1.1
2,075,988 + +0.8
2,076,035 - HP15_1956 0.12 -0.5
2,076,035 - HP15_1956 0.12 -0.8
2,076,035 - HP15_1956 0.12 +0.1
2,076,035 - HP15_1956 0.12 +0.6
2,076,035 - HP15_1956 0.12 +1.2
2,076,067 + HP15_1956 0.19 +0.7
2,076,075 - HP15_1956 0.20 +0.2
2,076,108 + HP15_1956 0.27 +0.2
2,076,116 - HP15_1956 0.28 -0.6
2,076,318 + HP15_1956 0.68 -0.0
2,076,380 - HP15_1956 0.80 -0.7
2,076,570 - -0.2
2,076,576 + HP15_1957 0.10 +1.2
2,076,576 + HP15_1957 0.10 +0.6
2,076,576 + HP15_1957 0.10 +0.9
2,076,576 + HP15_1957 0.10 +0.6
2,076,683 - HP15_1957 0.21 -0.2
2,076,693 - HP15_1957 0.22 +1.2
2,076,697 + HP15_1957 0.23 +0.7
2,076,702 + HP15_1957 0.23 +0.9
2,076,731 + HP15_1957 0.26 -0.9
2,076,739 - HP15_1957 0.27 +0.0
2,076,744 - HP15_1957 0.28 +1.5
2,076,744 - HP15_1957 0.28 -1.9
2,076,773 - HP15_1957 0.31 -0.8
2,076,815 - HP15_1957 0.35 -0.4
2,076,927 - HP15_1957 0.47 +0.6
2,077,014 - HP15_1957 0.55 +0.4
2,077,059 - HP15_1957 0.60 +0.2
2,077,149 - HP15_1957 0.69 +0.2
2,077,186 - HP15_1957 0.73 -0.1
2,077,338 - HP15_1957 0.89 +2.1
2,077,350 + +0.3
2,077,442 + +0.4
2,077,491 - +1.2
2,077,493 + +0.1
2,077,522 - -2.2
2,077,523 - +1.0
2,077,542 + +0.9
2,077,550 - HP15_1958 0.11 +0.1
2,077,581 + HP15_1958 0.19 +1.2
2,077,581 + HP15_1958 0.19 +0.7
2,077,581 + HP15_1958 0.19 +0.4
2,077,589 - HP15_1958 0.21 +0.1
2,077,594 - HP15_1958 0.22 -0.6
2,077,639 + HP15_1958 0.33 +0.6
2,077,639 + HP15_1958 0.33 +0.3
2,077,646 + HP15_1958 0.35 +0.7
2,077,647 - HP15_1958 0.35 -0.0
2,077,658 + HP15_1958 0.37 +0.3
2,077,688 - HP15_1958 0.45 +1.5
2,077,734 + HP15_1958 0.56 +1.4
2,077,742 - HP15_1958 0.58 +0.8
2,077,837 + HP15_1958 0.81 +0.8
2,077,875 - +0.2
2,077,896 + -0.7
2,078,067 - HP15_1959 0.25 +0.8
2,078,127 - HP15_1959 0.34 -1.3
2,078,127 - HP15_1959 0.34 +1.4
2,078,154 + HP15_1959 0.39 +1.2
2,078,285 + HP15_1959 0.60 +0.3
2,078,340 - HP15_1959 0.69 +1.0
2,078,355 + HP15_1959 0.71 -1.9
2,078,360 - HP15_1959 0.72 +1.4
2,078,363 - HP15_1959 0.73 +1.5
2,078,378 - HP15_1959 0.75 +0.9
2,078,410 + HP15_1959 0.80 +1.2

Or see this region's nucleotide sequence