Strain Fitness in Marinobacter adhaerens HP15 around HP15_1954

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1951 and HP15_1952 are separated by 20 nucleotidesHP15_1952 and HP15_1953 are separated by 113 nucleotidesHP15_1953 and HP15_1954 overlap by 4 nucleotidesHP15_1954 and HP15_1955 are separated by 44 nucleotidesHP15_1955 and HP15_1956 are separated by 164 nucleotides HP15_1951: HP15_1951 - hypothetical protein, at 2,071,570 to 2,071,809 _1951 HP15_1952: HP15_1952 - hypothetical protein, at 2,071,830 to 2,072,120 _1952 HP15_1953: HP15_1953 - hypothetical protein, at 2,072,234 to 2,072,587 _1953 HP15_1954: HP15_1954 - phage tail tape measure protein, family, at 2,072,584 to 2,075,346 _1954 HP15_1955: HP15_1955 - conserved hypothetical protein, secreted, at 2,075,391 to 2,075,807 _1955 HP15_1956: HP15_1956 - hypothetical protein, at 2,075,972 to 2,076,478 _1956 Position (kb) 2072 2073 2074 2075 2076Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2071.604 kb on + strand, within HP15_1951at 2071.610 kb on - strand, within HP15_1951at 2071.657 kb on - strand, within HP15_1951at 2071.664 kb on - strand, within HP15_1951at 2071.703 kb on - strand, within HP15_1951at 2071.837 kb on + strandat 2072.030 kb on + strand, within HP15_1952at 2072.038 kb on - strand, within HP15_1952at 2072.048 kb on - strand, within HP15_1952at 2072.076 kb on - strand, within HP15_1952at 2072.129 kb on + strandat 2072.140 kb on + strandat 2072.147 kb on + strandat 2072.362 kb on - strand, within HP15_1953at 2072.407 kb on + strand, within HP15_1953at 2072.420 kb on - strand, within HP15_1953at 2072.426 kb on + strand, within HP15_1953at 2072.473 kb on + strand, within HP15_1953at 2072.485 kb on + strand, within HP15_1953at 2072.493 kb on - strand, within HP15_1953at 2072.521 kb on + strand, within HP15_1953at 2072.529 kb on - strand, within HP15_1953at 2072.531 kb on + strand, within HP15_1953at 2072.534 kb on - strand, within HP15_1953at 2072.615 kb on - strandat 2072.627 kb on - strandat 2072.642 kb on + strandat 2072.709 kb on + strandat 2072.770 kb on - strandat 2072.776 kb on + strandat 2072.831 kb on - strandat 2072.834 kb on + strandat 2072.944 kb on - strand, within HP15_1954at 2073.139 kb on - strand, within HP15_1954at 2073.222 kb on + strand, within HP15_1954at 2073.230 kb on - strand, within HP15_1954at 2073.250 kb on + strand, within HP15_1954at 2073.270 kb on + strand, within HP15_1954at 2073.270 kb on + strand, within HP15_1954at 2073.608 kb on + strand, within HP15_1954at 2073.666 kb on + strand, within HP15_1954at 2073.674 kb on - strand, within HP15_1954at 2073.674 kb on - strand, within HP15_1954at 2073.674 kb on - strand, within HP15_1954at 2073.724 kb on + strand, within HP15_1954at 2073.752 kb on + strand, within HP15_1954at 2073.814 kb on - strand, within HP15_1954at 2073.839 kb on + strand, within HP15_1954at 2073.886 kb on - strand, within HP15_1954at 2073.886 kb on - strand, within HP15_1954at 2073.891 kb on + strand, within HP15_1954at 2073.899 kb on - strand, within HP15_1954at 2073.959 kb on + strand, within HP15_1954at 2073.967 kb on + strand, within HP15_1954at 2073.973 kb on - strand, within HP15_1954at 2074.062 kb on + strand, within HP15_1954at 2074.062 kb on + strand, within HP15_1954at 2074.133 kb on - strand, within HP15_1954at 2074.145 kb on - strand, within HP15_1954at 2074.146 kb on + strand, within HP15_1954at 2074.154 kb on - strand, within HP15_1954at 2074.154 kb on - strand, within HP15_1954at 2074.154 kb on - strand, within HP15_1954at 2074.154 kb on - strand, within HP15_1954at 2074.214 kb on - strand, within HP15_1954at 2074.236 kb on - strand, within HP15_1954at 2074.254 kb on - strand, within HP15_1954at 2074.254 kb on - strand, within HP15_1954at 2074.385 kb on + strand, within HP15_1954at 2074.426 kb on + strand, within HP15_1954at 2074.452 kb on - strand, within HP15_1954at 2074.557 kb on + strand, within HP15_1954at 2074.562 kb on + strand, within HP15_1954at 2074.577 kb on - strand, within HP15_1954at 2074.588 kb on + strand, within HP15_1954at 2074.691 kb on + strand, within HP15_1954at 2074.708 kb on + strand, within HP15_1954at 2074.729 kb on + strand, within HP15_1954at 2074.806 kb on + strand, within HP15_1954at 2074.861 kb on + strand, within HP15_1954at 2075.003 kb on - strand, within HP15_1954at 2075.190 kb on + strandat 2075.250 kb on - strandat 2075.304 kb on + strandat 2075.377 kb on + strandat 2075.538 kb on + strand, within HP15_1955at 2075.587 kb on + strand, within HP15_1955at 2075.617 kb on - strand, within HP15_1955at 2075.656 kb on - strand, within HP15_1955at 2075.696 kb on - strand, within HP15_1955at 2075.905 kb on + strandat 2075.913 kb on - strandat 2075.970 kb on + strandat 2075.970 kb on + strandat 2075.977 kb on - strandat 2075.988 kb on + strandat 2076.035 kb on - strand, within HP15_1956at 2076.035 kb on - strand, within HP15_1956at 2076.035 kb on - strand, within HP15_1956at 2076.035 kb on - strand, within HP15_1956at 2076.035 kb on - strand, within HP15_1956at 2076.067 kb on + strand, within HP15_1956at 2076.075 kb on - strand, within HP15_1956at 2076.108 kb on + strand, within HP15_1956at 2076.116 kb on - strand, within HP15_1956at 2076.318 kb on + strand, within HP15_1956

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,071,604 + HP15_1951 0.14 +1.5
2,071,610 - HP15_1951 0.17 +0.8
2,071,657 - HP15_1951 0.36 +1.2
2,071,664 - HP15_1951 0.39 +1.0
2,071,703 - HP15_1951 0.55 +1.0
2,071,837 + +0.1
2,072,030 + HP15_1952 0.69 +0.0
2,072,038 - HP15_1952 0.71 +0.7
2,072,048 - HP15_1952 0.75 +0.7
2,072,076 - HP15_1952 0.85 +0.5
2,072,129 + +1.0
2,072,140 + -0.9
2,072,147 + -0.9
2,072,362 - HP15_1953 0.36 +0.5
2,072,407 + HP15_1953 0.49 +0.1
2,072,420 - HP15_1953 0.53 +0.3
2,072,426 + HP15_1953 0.54 -0.3
2,072,473 + HP15_1953 0.68 -0.3
2,072,485 + HP15_1953 0.71 +0.1
2,072,493 - HP15_1953 0.73 +2.1
2,072,521 + HP15_1953 0.81 +0.9
2,072,529 - HP15_1953 0.83 -0.9
2,072,531 + HP15_1953 0.84 -0.9
2,072,534 - HP15_1953 0.85 +0.5
2,072,615 - -0.1
2,072,627 - +0.8
2,072,642 + +0.3
2,072,709 + -0.9
2,072,770 - +0.4
2,072,776 + +1.9
2,072,831 - -0.3
2,072,834 + +0.7
2,072,944 - HP15_1954 0.13 +0.2
2,073,139 - HP15_1954 0.20 +0.2
2,073,222 + HP15_1954 0.23 -0.9
2,073,230 - HP15_1954 0.23 +0.9
2,073,250 + HP15_1954 0.24 +0.6
2,073,270 + HP15_1954 0.25 +1.2
2,073,270 + HP15_1954 0.25 +0.5
2,073,608 + HP15_1954 0.37 +0.6
2,073,666 + HP15_1954 0.39 -0.4
2,073,674 - HP15_1954 0.39 -0.3
2,073,674 - HP15_1954 0.39 +0.8
2,073,674 - HP15_1954 0.39 +0.7
2,073,724 + HP15_1954 0.41 -0.6
2,073,752 + HP15_1954 0.42 +0.7
2,073,814 - HP15_1954 0.45 +0.3
2,073,839 + HP15_1954 0.45 +1.4
2,073,886 - HP15_1954 0.47 +0.6
2,073,886 - HP15_1954 0.47 +0.8
2,073,891 + HP15_1954 0.47 -0.5
2,073,899 - HP15_1954 0.48 +0.4
2,073,959 + HP15_1954 0.50 +0.3
2,073,967 + HP15_1954 0.50 +0.3
2,073,973 - HP15_1954 0.50 +0.2
2,074,062 + HP15_1954 0.53 +1.1
2,074,062 + HP15_1954 0.53 -0.3
2,074,133 - HP15_1954 0.56 +0.6
2,074,145 - HP15_1954 0.56 +0.7
2,074,146 + HP15_1954 0.57 +0.2
2,074,154 - HP15_1954 0.57 +5.5
2,074,154 - HP15_1954 0.57 -0.7
2,074,154 - HP15_1954 0.57 +1.8
2,074,154 - HP15_1954 0.57 +0.2
2,074,214 - HP15_1954 0.59 -0.5
2,074,236 - HP15_1954 0.60 +2.0
2,074,254 - HP15_1954 0.60 -0.6
2,074,254 - HP15_1954 0.60 +0.3
2,074,385 + HP15_1954 0.65 +0.5
2,074,426 + HP15_1954 0.67 +0.5
2,074,452 - HP15_1954 0.68 +0.4
2,074,557 + HP15_1954 0.71 -0.2
2,074,562 + HP15_1954 0.72 +0.7
2,074,577 - HP15_1954 0.72 +0.8
2,074,588 + HP15_1954 0.73 -0.6
2,074,691 + HP15_1954 0.76 -0.0
2,074,708 + HP15_1954 0.77 +0.2
2,074,729 + HP15_1954 0.78 +1.5
2,074,806 + HP15_1954 0.80 +0.3
2,074,861 + HP15_1954 0.82 +0.4
2,075,003 - HP15_1954 0.88 -0.6
2,075,190 + +0.7
2,075,250 - -0.1
2,075,304 + +1.2
2,075,377 + +0.9
2,075,538 + HP15_1955 0.35 +1.2
2,075,587 + HP15_1955 0.47 +0.4
2,075,617 - HP15_1955 0.54 +0.0
2,075,656 - HP15_1955 0.64 +0.5
2,075,696 - HP15_1955 0.73 +0.7
2,075,905 + +0.5
2,075,913 - +0.3
2,075,970 + -0.1
2,075,970 + +1.4
2,075,977 - +1.1
2,075,988 + +0.8
2,076,035 - HP15_1956 0.12 -0.5
2,076,035 - HP15_1956 0.12 -0.8
2,076,035 - HP15_1956 0.12 +0.1
2,076,035 - HP15_1956 0.12 +0.6
2,076,035 - HP15_1956 0.12 +1.2
2,076,067 + HP15_1956 0.19 +0.7
2,076,075 - HP15_1956 0.20 +0.2
2,076,108 + HP15_1956 0.27 +0.2
2,076,116 - HP15_1956 0.28 -0.6
2,076,318 + HP15_1956 0.68 -0.0

Or see this region's nucleotide sequence