Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1934 and HP15_1935 are separated by 383 nucleotides HP15_1935 and HP15_1936 are separated by 16 nucleotides HP15_1936 and HP15_1937 are separated by 135 nucleotides
HP15_1934: HP15_1934 - periplasmic glucan biosynthesis protein MdoG, at 2,053,108 to 2,054,694
_1934
HP15_1935: HP15_1935 - UTP-glucose-1-phosphate uridylyltransferase, at 2,055,078 to 2,055,914
_1935
HP15_1936: HP15_1936 - conserved hypothetical protein, at 2,055,931 to 2,056,173
_1936
HP15_1937: HP15_1937 - protein containing bacterial bifunctional deaminase-reductase, C-terminal domain, at 2,056,309 to 2,057,181
_1937
Position (kb)
2055
2056 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2054.149 kb on + strand, within HP15_1934 at 2054.204 kb on + strand, within HP15_1934 at 2054.382 kb on + strand, within HP15_1934 at 2054.444 kb on + strand, within HP15_1934 at 2054.545 kb on + strand at 2054.643 kb on + strand at 2054.669 kb on + strand at 2054.856 kb on + strand at 2054.864 kb on - strand at 2054.911 kb on + strand at 2056.089 kb on - strand, within HP15_1936 at 2056.275 kb on + strand at 2056.299 kb on - strand at 2056.321 kb on + strand at 2056.321 kb on + strand at 2056.728 kb on - strand, within HP15_1937 at 2056.730 kb on - strand, within HP15_1937 at 2056.772 kb on + strand, within HP15_1937 at 2056.779 kb on + strand, within HP15_1937 at 2056.851 kb on + strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,054,149 + HP15_1934 0.66 +0.2 2,054,204 + HP15_1934 0.69 -0.6 2,054,382 + HP15_1934 0.80 +1.3 2,054,444 + HP15_1934 0.84 +2.0 2,054,545 + -1.2 2,054,643 + -0.2 2,054,669 + -0.6 2,054,856 + -0.6 2,054,864 - +0.4 2,054,911 + +0.1 2,056,089 - HP15_1936 0.65 +0.3 2,056,275 + -0.0 2,056,299 - -0.1 2,056,321 + +0.2 2,056,321 + -1.9 2,056,728 - HP15_1937 0.48 +1.0 2,056,730 - HP15_1937 0.48 -0.8 2,056,772 + HP15_1937 0.53 -1.2 2,056,779 + HP15_1937 0.54 +0.4 2,056,851 + HP15_1937 0.62 +0.1 2,056,864 - HP15_1937 0.64 -1.6 2,056,864 - HP15_1937 0.64 -0.5 2,056,864 - HP15_1937 0.64 +0.1
Or see this region's nucleotide sequence