Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1889 and HP15_1890 are separated by 81 nucleotides HP15_1890 and HP15_1891 are separated by 151 nucleotides
HP15_1889: HP15_1889 - NAD-dependent epimerase/dehydratase, at 1,993,336 to 1,994,283
_1889
HP15_1890: HP15_1890 - periplasmic sensor signal transduction histidine kinase, at 1,994,365 to 1,996,500
_1890
HP15_1891: HP15_1891 - two component, sigma54 specific, transcriptional regulator, Fis family, at 1,996,652 to 1,997,974
_1891
Position (kb)
1994
1995
1996
1997 Strain fitness (log2 ratio)
-2
-1
0
1 at 1993.418 kb on - strand at 1993.455 kb on + strand, within HP15_1889 at 1993.704 kb on + strand, within HP15_1889 at 1993.709 kb on + strand, within HP15_1889 at 1993.745 kb on - strand, within HP15_1889 at 1993.752 kb on + strand, within HP15_1889 at 1993.752 kb on + strand, within HP15_1889 at 1993.757 kb on + strand, within HP15_1889 at 1993.757 kb on + strand, within HP15_1889 at 1993.758 kb on - strand, within HP15_1889 at 1993.767 kb on + strand, within HP15_1889 at 1993.775 kb on - strand, within HP15_1889 at 1993.885 kb on - strand, within HP15_1889 at 1993.973 kb on + strand, within HP15_1889 at 1993.991 kb on - strand, within HP15_1889 at 1994.023 kb on + strand, within HP15_1889 at 1994.031 kb on - strand, within HP15_1889 at 1994.031 kb on - strand, within HP15_1889 at 1994.051 kb on + strand, within HP15_1889 at 1994.051 kb on + strand, within HP15_1889 at 1994.313 kb on + strand at 1994.321 kb on - strand at 1994.321 kb on - strand at 1994.804 kb on - strand, within HP15_1890 at 1994.876 kb on - strand, within HP15_1890 at 1995.059 kb on + strand, within HP15_1890 at 1995.157 kb on + strand, within HP15_1890 at 1995.267 kb on + strand, within HP15_1890 at 1995.320 kb on - strand, within HP15_1890 at 1995.320 kb on - strand, within HP15_1890 at 1995.325 kb on - strand, within HP15_1890 at 1995.336 kb on - strand, within HP15_1890 at 1995.448 kb on + strand, within HP15_1890 at 1995.528 kb on + strand, within HP15_1890 at 1995.697 kb on - strand, within HP15_1890 at 1995.699 kb on + strand, within HP15_1890 at 1995.699 kb on + strand, within HP15_1890 at 1995.699 kb on + strand, within HP15_1890 at 1995.835 kb on + strand, within HP15_1890 at 1995.906 kb on - strand, within HP15_1890 at 1995.911 kb on - strand, within HP15_1890 at 1995.971 kb on - strand, within HP15_1890 at 1996.120 kb on + strand, within HP15_1890 at 1996.120 kb on + strand, within HP15_1890 at 1996.128 kb on - strand, within HP15_1890 at 1996.152 kb on - strand, within HP15_1890 at 1996.157 kb on - strand, within HP15_1890 at 1996.203 kb on - strand, within HP15_1890 at 1996.210 kb on + strand, within HP15_1890 at 1996.213 kb on - strand, within HP15_1890 at 1996.218 kb on - strand, within HP15_1890 at 1996.390 kb on - strand at 1996.478 kb on + strand at 1996.478 kb on + strand at 1996.486 kb on - strand at 1996.598 kb on + strand at 1996.606 kb on - strand at 1996.728 kb on - strand at 1996.735 kb on + strand at 1996.762 kb on - strand at 1996.775 kb on - strand at 1996.782 kb on - strand at 1996.873 kb on - strand, within HP15_1891 at 1996.902 kb on + strand, within HP15_1891 at 1996.936 kb on + strand, within HP15_1891 at 1996.945 kb on - strand, within HP15_1891 at 1996.949 kb on + strand, within HP15_1891 at 1997.119 kb on - strand, within HP15_1891 at 1997.226 kb on - strand, within HP15_1891 at 1997.416 kb on + strand, within HP15_1891 at 1997.436 kb on + strand, within HP15_1891
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,993,418 - +0.6 1,993,455 + HP15_1889 0.13 +0.7 1,993,704 + HP15_1889 0.39 +0.1 1,993,709 + HP15_1889 0.39 +0.7 1,993,745 - HP15_1889 0.43 -0.8 1,993,752 + HP15_1889 0.44 +0.1 1,993,752 + HP15_1889 0.44 +0.5 1,993,757 + HP15_1889 0.44 -0.4 1,993,757 + HP15_1889 0.44 -0.2 1,993,758 - HP15_1889 0.45 -0.6 1,993,767 + HP15_1889 0.45 -0.7 1,993,775 - HP15_1889 0.46 -0.7 1,993,885 - HP15_1889 0.58 -1.6 1,993,973 + HP15_1889 0.67 -0.4 1,993,991 - HP15_1889 0.69 +0.8 1,994,023 + HP15_1889 0.72 +0.2 1,994,031 - HP15_1889 0.73 -0.6 1,994,031 - HP15_1889 0.73 -0.3 1,994,051 + HP15_1889 0.75 +0.5 1,994,051 + HP15_1889 0.75 -0.5 1,994,313 + +0.7 1,994,321 - -0.1 1,994,321 - +0.5 1,994,804 - HP15_1890 0.21 +0.4 1,994,876 - HP15_1890 0.24 +0.0 1,995,059 + HP15_1890 0.32 +0.7 1,995,157 + HP15_1890 0.37 -0.5 1,995,267 + HP15_1890 0.42 -0.3 1,995,320 - HP15_1890 0.45 -0.4 1,995,320 - HP15_1890 0.45 -1.1 1,995,325 - HP15_1890 0.45 -0.3 1,995,336 - HP15_1890 0.45 -1.3 1,995,448 + HP15_1890 0.51 -1.9 1,995,528 + HP15_1890 0.54 -1.1 1,995,697 - HP15_1890 0.62 +0.3 1,995,699 + HP15_1890 0.62 -1.2 1,995,699 + HP15_1890 0.62 -0.4 1,995,699 + HP15_1890 0.62 +0.3 1,995,835 + HP15_1890 0.69 -1.9 1,995,906 - HP15_1890 0.72 -1.7 1,995,911 - HP15_1890 0.72 -1.0 1,995,971 - HP15_1890 0.75 -0.2 1,996,120 + HP15_1890 0.82 -0.3 1,996,120 + HP15_1890 0.82 -0.5 1,996,128 - HP15_1890 0.83 -0.3 1,996,152 - HP15_1890 0.84 -0.1 1,996,157 - HP15_1890 0.84 -0.4 1,996,203 - HP15_1890 0.86 -1.3 1,996,210 + HP15_1890 0.86 -1.9 1,996,213 - HP15_1890 0.87 +0.2 1,996,218 - HP15_1890 0.87 -0.2 1,996,390 - -0.9 1,996,478 + -0.9 1,996,478 + -0.2 1,996,486 - +0.9 1,996,598 + -0.8 1,996,606 - -0.3 1,996,728 - -1.1 1,996,735 + -0.7 1,996,762 - -0.7 1,996,775 - -0.5 1,996,782 - -0.7 1,996,873 - HP15_1891 0.17 +0.5 1,996,902 + HP15_1891 0.19 +0.3 1,996,936 + HP15_1891 0.21 +0.4 1,996,945 - HP15_1891 0.22 -0.6 1,996,949 + HP15_1891 0.22 -0.3 1,997,119 - HP15_1891 0.35 +0.3 1,997,226 - HP15_1891 0.43 -0.3 1,997,416 + HP15_1891 0.58 +0.7 1,997,436 + HP15_1891 0.59 -0.3
Or see this region's nucleotide sequence