Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1882 and HP15_1883 are separated by 31 nucleotides HP15_1883 and HP15_1884 are separated by 31 nucleotides HP15_1884 and HP15_1885 are separated by 3 nucleotides
HP15_1882: HP15_1882 - ribonuclease D, at 1,986,276 to 1,987,433
_1882
HP15_1883: HP15_1883 - recombination protein RecR, at 1,987,465 to 1,988,067
_1883
HP15_1884: HP15_1884 - protein belonging to uncharacterized protein family UPF0133, at 1,988,099 to 1,988,422
_1884
HP15_1885: HP15_1885 - DNA polymerase III subunits gamma and tau, at 1,988,426 to 1,990,378
_1885
Position (kb)
1987
1988
1989 Strain fitness (log2 ratio)
-2
-1
0
1 at 1986.492 kb on - strand, within HP15_1882 at 1986.550 kb on + strand, within HP15_1882 at 1986.560 kb on + strand, within HP15_1882 at 1986.737 kb on - strand, within HP15_1882 at 1986.878 kb on + strand, within HP15_1882 at 1986.878 kb on + strand, within HP15_1882 at 1986.946 kb on + strand, within HP15_1882 at 1987.051 kb on + strand, within HP15_1882 at 1987.130 kb on + strand, within HP15_1882 at 1987.138 kb on - strand, within HP15_1882 at 1987.162 kb on - strand, within HP15_1882 at 1987.352 kb on - strand at 1987.352 kb on - strand at 1987.606 kb on - strand, within HP15_1883 at 1988.098 kb on - strand at 1988.136 kb on - strand, within HP15_1884
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,986,492 - HP15_1882 0.19 -1.3 1,986,550 + HP15_1882 0.24 +0.3 1,986,560 + HP15_1882 0.25 +0.2 1,986,737 - HP15_1882 0.40 +0.3 1,986,878 + HP15_1882 0.52 +0.1 1,986,878 + HP15_1882 0.52 +0.2 1,986,946 + HP15_1882 0.58 +1.0 1,987,051 + HP15_1882 0.67 +0.3 1,987,130 + HP15_1882 0.74 +0.6 1,987,138 - HP15_1882 0.74 +0.5 1,987,162 - HP15_1882 0.77 +0.2 1,987,352 - +0.2 1,987,352 - +0.5 1,987,606 - HP15_1883 0.23 -1.9 1,988,098 - -2.3 1,988,136 - HP15_1884 0.11 -2.3
Or see this region's nucleotide sequence