Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17310 and PGA1_c17320 are separated by 222 nucleotides PGA1_c17320 and PGA1_c17330 are separated by 257 nucleotides
PGA1_c17310: PGA1_c17310 - putative fatty acid desaturase, at 1,806,654 to 1,807,682
_c17310
PGA1_c17320: PGA1_c17320 - Uncharacterized protein conserved in bacteria, at 1,807,905 to 1,808,504
_c17320
PGA1_c17330: PGA1_c17330 - Predicted O-linked N-acetylglucosamine transferase, SPINDLY family, at 1,808,762 to 1,810,519
_c17330
Position (kb)
1807
1808
1809 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1806.963 kb on - strand, within PGA1_c17310 at 1806.978 kb on + strand, within PGA1_c17310 at 1807.061 kb on + strand, within PGA1_c17310 at 1807.069 kb on - strand, within PGA1_c17310 at 1807.071 kb on - strand, within PGA1_c17310 at 1807.104 kb on - strand, within PGA1_c17310 at 1807.152 kb on + strand, within PGA1_c17310 at 1807.160 kb on - strand, within PGA1_c17310 at 1807.211 kb on - strand, within PGA1_c17310 at 1807.211 kb on - strand, within PGA1_c17310 at 1807.323 kb on - strand, within PGA1_c17310 at 1807.425 kb on - strand, within PGA1_c17310 at 1807.511 kb on - strand, within PGA1_c17310 at 1807.563 kb on - strand, within PGA1_c17310 at 1807.565 kb on + strand, within PGA1_c17310 at 1807.681 kb on + strand at 1807.728 kb on + strand at 1807.757 kb on - strand at 1807.799 kb on + strand at 1807.799 kb on + strand at 1807.799 kb on + strand at 1807.799 kb on + strand at 1807.807 kb on - strand at 1807.878 kb on + strand at 1807.964 kb on - strand at 1807.966 kb on + strand, within PGA1_c17320 at 1808.081 kb on - strand, within PGA1_c17320 at 1808.107 kb on + strand, within PGA1_c17320 at 1808.175 kb on - strand, within PGA1_c17320 at 1808.180 kb on + strand, within PGA1_c17320 at 1808.331 kb on + strand, within PGA1_c17320 at 1808.338 kb on - strand, within PGA1_c17320 at 1808.339 kb on - strand, within PGA1_c17320 at 1808.347 kb on + strand, within PGA1_c17320 at 1808.417 kb on - strand, within PGA1_c17320 at 1808.468 kb on - strand at 1808.490 kb on - strand at 1808.510 kb on + strand at 1808.542 kb on + strand at 1808.575 kb on + strand at 1808.657 kb on + strand at 1808.685 kb on + strand at 1808.724 kb on + strand at 1808.729 kb on + strand at 1808.732 kb on - strand at 1808.760 kb on + strand at 1808.760 kb on + strand at 1808.761 kb on - strand at 1808.767 kb on - strand at 1808.768 kb on - strand at 1808.768 kb on - strand at 1808.768 kb on - strand at 1808.783 kb on + strand at 1808.868 kb on + strand at 1808.868 kb on + strand at 1808.868 kb on + strand at 1808.868 kb on + strand at 1808.868 kb on + strand at 1808.868 kb on + strand at 1808.868 kb on + strand at 1808.876 kb on - strand at 1808.876 kb on - strand at 1808.876 kb on - strand at 1808.876 kb on - strand at 1808.964 kb on + strand, within PGA1_c17330 at 1808.969 kb on + strand, within PGA1_c17330 at 1808.969 kb on + strand, within PGA1_c17330 at 1808.992 kb on + strand, within PGA1_c17330 at 1808.992 kb on + strand, within PGA1_c17330 at 1808.992 kb on + strand, within PGA1_c17330 at 1809.010 kb on - strand, within PGA1_c17330 at 1809.059 kb on + strand, within PGA1_c17330 at 1809.073 kb on + strand, within PGA1_c17330 at 1809.075 kb on - strand, within PGA1_c17330 at 1809.081 kb on - strand, within PGA1_c17330 at 1809.109 kb on - strand, within PGA1_c17330 at 1809.116 kb on + strand, within PGA1_c17330 at 1809.173 kb on + strand, within PGA1_c17330 at 1809.187 kb on - strand, within PGA1_c17330 at 1809.203 kb on + strand, within PGA1_c17330 at 1809.205 kb on + strand, within PGA1_c17330 at 1809.220 kb on + strand, within PGA1_c17330 at 1809.228 kb on - strand, within PGA1_c17330 at 1809.228 kb on - strand, within PGA1_c17330 at 1809.264 kb on + strand, within PGA1_c17330 at 1809.272 kb on - strand, within PGA1_c17330 at 1809.294 kb on + strand, within PGA1_c17330 at 1809.307 kb on - strand, within PGA1_c17330 at 1809.344 kb on - strand, within PGA1_c17330 at 1809.357 kb on + strand, within PGA1_c17330 at 1809.365 kb on - strand, within PGA1_c17330 at 1809.385 kb on + strand, within PGA1_c17330 at 1809.393 kb on - strand, within PGA1_c17330 at 1809.421 kb on + strand, within PGA1_c17330 at 1809.442 kb on + strand, within PGA1_c17330 at 1809.442 kb on + strand, within PGA1_c17330 at 1809.442 kb on + strand, within PGA1_c17330 at 1809.450 kb on - strand, within PGA1_c17330 at 1809.450 kb on - strand, within PGA1_c17330 at 1809.450 kb on - strand, within PGA1_c17330 at 1809.450 kb on - strand, within PGA1_c17330 at 1809.450 kb on - strand, within PGA1_c17330 at 1809.496 kb on + strand, within PGA1_c17330 at 1809.496 kb on + strand, within PGA1_c17330 at 1809.496 kb on + strand, within PGA1_c17330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 1,806,963 - PGA1_c17310 0.30 +1.0 1,806,978 + PGA1_c17310 0.31 +1.1 1,807,061 + PGA1_c17310 0.40 +0.8 1,807,069 - PGA1_c17310 0.40 +0.3 1,807,071 - PGA1_c17310 0.41 +0.9 1,807,104 - PGA1_c17310 0.44 +0.0 1,807,152 + PGA1_c17310 0.48 +2.5 1,807,160 - PGA1_c17310 0.49 +0.5 1,807,211 - PGA1_c17310 0.54 -0.2 1,807,211 - PGA1_c17310 0.54 +1.0 1,807,323 - PGA1_c17310 0.65 -0.8 1,807,425 - PGA1_c17310 0.75 +0.5 1,807,511 - PGA1_c17310 0.83 +0.3 1,807,563 - PGA1_c17310 0.88 -0.7 1,807,565 + PGA1_c17310 0.89 -1.8 1,807,681 + -0.4 1,807,728 + +0.4 1,807,757 - +1.2 1,807,799 + -0.2 1,807,799 + -0.5 1,807,799 + -0.8 1,807,799 + +0.7 1,807,807 - +0.2 1,807,878 + -1.5 1,807,964 - +0.4 1,807,966 + PGA1_c17320 0.10 -0.3 1,808,081 - PGA1_c17320 0.29 -1.0 1,808,107 + PGA1_c17320 0.34 -0.5 1,808,175 - PGA1_c17320 0.45 -1.6 1,808,180 + PGA1_c17320 0.46 -0.5 1,808,331 + PGA1_c17320 0.71 -1.0 1,808,338 - PGA1_c17320 0.72 -0.1 1,808,339 - PGA1_c17320 0.72 +0.6 1,808,347 + PGA1_c17320 0.74 -1.4 1,808,417 - PGA1_c17320 0.85 -2.9 1,808,468 - -0.0 1,808,490 - +0.3 1,808,510 + -0.0 1,808,542 + +0.4 1,808,575 + +0.7 1,808,657 + +0.5 1,808,685 + +1.1 1,808,724 + +0.7 1,808,729 + -0.2 1,808,732 - -0.2 1,808,760 + +1.2 1,808,760 + +0.5 1,808,761 - -0.9 1,808,767 - +0.5 1,808,768 - +0.8 1,808,768 - +0.4 1,808,768 - -0.3 1,808,783 + -1.3 1,808,868 + +0.5 1,808,868 + -0.9 1,808,868 + +0.1 1,808,868 + +1.1 1,808,868 + +0.9 1,808,868 + -0.1 1,808,868 + +0.2 1,808,876 - -0.2 1,808,876 - +0.6 1,808,876 - -0.8 1,808,876 - +0.7 1,808,964 + PGA1_c17330 0.11 +1.3 1,808,969 + PGA1_c17330 0.12 +0.3 1,808,969 + PGA1_c17330 0.12 -0.0 1,808,992 + PGA1_c17330 0.13 -0.5 1,808,992 + PGA1_c17330 0.13 +0.5 1,808,992 + PGA1_c17330 0.13 +0.7 1,809,010 - PGA1_c17330 0.14 +1.2 1,809,059 + PGA1_c17330 0.17 +0.5 1,809,073 + PGA1_c17330 0.18 -0.8 1,809,075 - PGA1_c17330 0.18 +0.5 1,809,081 - PGA1_c17330 0.18 +1.1 1,809,109 - PGA1_c17330 0.20 +0.1 1,809,116 + PGA1_c17330 0.20 -0.8 1,809,173 + PGA1_c17330 0.23 -0.8 1,809,187 - PGA1_c17330 0.24 +0.8 1,809,203 + PGA1_c17330 0.25 -0.5 1,809,205 + PGA1_c17330 0.25 +0.6 1,809,220 + PGA1_c17330 0.26 +2.5 1,809,228 - PGA1_c17330 0.27 +0.2 1,809,228 - PGA1_c17330 0.27 +2.1 1,809,264 + PGA1_c17330 0.29 +0.3 1,809,272 - PGA1_c17330 0.29 -2.2 1,809,294 + PGA1_c17330 0.30 +0.1 1,809,307 - PGA1_c17330 0.31 -0.5 1,809,344 - PGA1_c17330 0.33 -1.0 1,809,357 + PGA1_c17330 0.34 +0.7 1,809,365 - PGA1_c17330 0.34 +2.9 1,809,385 + PGA1_c17330 0.35 -1.9 1,809,393 - PGA1_c17330 0.36 -0.2 1,809,421 + PGA1_c17330 0.37 -0.0 1,809,442 + PGA1_c17330 0.39 +0.3 1,809,442 + PGA1_c17330 0.39 -2.3 1,809,442 + PGA1_c17330 0.39 +1.3 1,809,450 - PGA1_c17330 0.39 +0.5 1,809,450 - PGA1_c17330 0.39 +1.3 1,809,450 - PGA1_c17330 0.39 -0.7 1,809,450 - PGA1_c17330 0.39 +0.5 1,809,450 - PGA1_c17330 0.39 -0.4 1,809,496 + PGA1_c17330 0.42 +0.2 1,809,496 + PGA1_c17330 0.42 +0.4 1,809,496 + PGA1_c17330 0.42 -0.8
Or see this region's nucleotide sequence