Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17320

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17310 and PGA1_c17320 are separated by 222 nucleotidesPGA1_c17320 and PGA1_c17330 are separated by 257 nucleotides PGA1_c17310: PGA1_c17310 - putative fatty acid desaturase, at 1,806,654 to 1,807,682 _c17310 PGA1_c17320: PGA1_c17320 - Uncharacterized protein conserved in bacteria, at 1,807,905 to 1,808,504 _c17320 PGA1_c17330: PGA1_c17330 - Predicted O-linked N-acetylglucosamine transferase, SPINDLY family, at 1,808,762 to 1,810,519 _c17330 Position (kb) 1807 1808 1809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1806.963 kb on - strand, within PGA1_c17310at 1806.978 kb on + strand, within PGA1_c17310at 1807.061 kb on + strand, within PGA1_c17310at 1807.069 kb on - strand, within PGA1_c17310at 1807.071 kb on - strand, within PGA1_c17310at 1807.104 kb on - strand, within PGA1_c17310at 1807.152 kb on + strand, within PGA1_c17310at 1807.160 kb on - strand, within PGA1_c17310at 1807.211 kb on - strand, within PGA1_c17310at 1807.211 kb on - strand, within PGA1_c17310at 1807.323 kb on - strand, within PGA1_c17310at 1807.425 kb on - strand, within PGA1_c17310at 1807.511 kb on - strand, within PGA1_c17310at 1807.563 kb on - strand, within PGA1_c17310at 1807.565 kb on + strand, within PGA1_c17310at 1807.681 kb on + strandat 1807.728 kb on + strandat 1807.757 kb on - strandat 1807.799 kb on + strandat 1807.799 kb on + strandat 1807.799 kb on + strandat 1807.799 kb on + strandat 1807.807 kb on - strandat 1807.878 kb on + strandat 1807.964 kb on - strandat 1807.966 kb on + strand, within PGA1_c17320at 1808.081 kb on - strand, within PGA1_c17320at 1808.107 kb on + strand, within PGA1_c17320at 1808.175 kb on - strand, within PGA1_c17320at 1808.180 kb on + strand, within PGA1_c17320at 1808.331 kb on + strand, within PGA1_c17320at 1808.338 kb on - strand, within PGA1_c17320at 1808.339 kb on - strand, within PGA1_c17320at 1808.347 kb on + strand, within PGA1_c17320at 1808.417 kb on - strand, within PGA1_c17320at 1808.468 kb on - strandat 1808.490 kb on - strandat 1808.510 kb on + strandat 1808.542 kb on + strandat 1808.575 kb on + strandat 1808.657 kb on + strandat 1808.685 kb on + strandat 1808.724 kb on + strandat 1808.729 kb on + strandat 1808.732 kb on - strandat 1808.760 kb on + strandat 1808.760 kb on + strandat 1808.761 kb on - strandat 1808.767 kb on - strandat 1808.768 kb on - strandat 1808.768 kb on - strandat 1808.768 kb on - strandat 1808.783 kb on + strandat 1808.868 kb on + strandat 1808.868 kb on + strandat 1808.868 kb on + strandat 1808.868 kb on + strandat 1808.868 kb on + strandat 1808.868 kb on + strandat 1808.868 kb on + strandat 1808.876 kb on - strandat 1808.876 kb on - strandat 1808.876 kb on - strandat 1808.876 kb on - strandat 1808.964 kb on + strand, within PGA1_c17330at 1808.969 kb on + strand, within PGA1_c17330at 1808.969 kb on + strand, within PGA1_c17330at 1808.992 kb on + strand, within PGA1_c17330at 1808.992 kb on + strand, within PGA1_c17330at 1808.992 kb on + strand, within PGA1_c17330at 1809.010 kb on - strand, within PGA1_c17330at 1809.059 kb on + strand, within PGA1_c17330at 1809.073 kb on + strand, within PGA1_c17330at 1809.075 kb on - strand, within PGA1_c17330at 1809.081 kb on - strand, within PGA1_c17330at 1809.109 kb on - strand, within PGA1_c17330at 1809.116 kb on + strand, within PGA1_c17330at 1809.173 kb on + strand, within PGA1_c17330at 1809.187 kb on - strand, within PGA1_c17330at 1809.203 kb on + strand, within PGA1_c17330at 1809.205 kb on + strand, within PGA1_c17330at 1809.220 kb on + strand, within PGA1_c17330at 1809.228 kb on - strand, within PGA1_c17330at 1809.228 kb on - strand, within PGA1_c17330at 1809.264 kb on + strand, within PGA1_c17330at 1809.272 kb on - strand, within PGA1_c17330at 1809.294 kb on + strand, within PGA1_c17330at 1809.307 kb on - strand, within PGA1_c17330at 1809.344 kb on - strand, within PGA1_c17330at 1809.357 kb on + strand, within PGA1_c17330at 1809.365 kb on - strand, within PGA1_c17330at 1809.385 kb on + strand, within PGA1_c17330at 1809.393 kb on - strand, within PGA1_c17330at 1809.421 kb on + strand, within PGA1_c17330at 1809.442 kb on + strand, within PGA1_c17330at 1809.442 kb on + strand, within PGA1_c17330at 1809.442 kb on + strand, within PGA1_c17330at 1809.450 kb on - strand, within PGA1_c17330at 1809.450 kb on - strand, within PGA1_c17330at 1809.450 kb on - strand, within PGA1_c17330at 1809.450 kb on - strand, within PGA1_c17330at 1809.450 kb on - strand, within PGA1_c17330at 1809.496 kb on + strand, within PGA1_c17330at 1809.496 kb on + strand, within PGA1_c17330at 1809.496 kb on + strand, within PGA1_c17330

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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1,806,963 - PGA1_c17310 0.30 +1.0
1,806,978 + PGA1_c17310 0.31 +1.1
1,807,061 + PGA1_c17310 0.40 +0.8
1,807,069 - PGA1_c17310 0.40 +0.3
1,807,071 - PGA1_c17310 0.41 +0.9
1,807,104 - PGA1_c17310 0.44 +0.0
1,807,152 + PGA1_c17310 0.48 +2.5
1,807,160 - PGA1_c17310 0.49 +0.5
1,807,211 - PGA1_c17310 0.54 -0.2
1,807,211 - PGA1_c17310 0.54 +1.0
1,807,323 - PGA1_c17310 0.65 -0.8
1,807,425 - PGA1_c17310 0.75 +0.5
1,807,511 - PGA1_c17310 0.83 +0.3
1,807,563 - PGA1_c17310 0.88 -0.7
1,807,565 + PGA1_c17310 0.89 -1.8
1,807,681 + -0.4
1,807,728 + +0.4
1,807,757 - +1.2
1,807,799 + -0.2
1,807,799 + -0.5
1,807,799 + -0.8
1,807,799 + +0.7
1,807,807 - +0.2
1,807,878 + -1.5
1,807,964 - +0.4
1,807,966 + PGA1_c17320 0.10 -0.3
1,808,081 - PGA1_c17320 0.29 -1.0
1,808,107 + PGA1_c17320 0.34 -0.5
1,808,175 - PGA1_c17320 0.45 -1.6
1,808,180 + PGA1_c17320 0.46 -0.5
1,808,331 + PGA1_c17320 0.71 -1.0
1,808,338 - PGA1_c17320 0.72 -0.1
1,808,339 - PGA1_c17320 0.72 +0.6
1,808,347 + PGA1_c17320 0.74 -1.4
1,808,417 - PGA1_c17320 0.85 -2.9
1,808,468 - -0.0
1,808,490 - +0.3
1,808,510 + -0.0
1,808,542 + +0.4
1,808,575 + +0.7
1,808,657 + +0.5
1,808,685 + +1.1
1,808,724 + +0.7
1,808,729 + -0.2
1,808,732 - -0.2
1,808,760 + +1.2
1,808,760 + +0.5
1,808,761 - -0.9
1,808,767 - +0.5
1,808,768 - +0.8
1,808,768 - +0.4
1,808,768 - -0.3
1,808,783 + -1.3
1,808,868 + +0.5
1,808,868 + -0.9
1,808,868 + +0.1
1,808,868 + +1.1
1,808,868 + +0.9
1,808,868 + -0.1
1,808,868 + +0.2
1,808,876 - -0.2
1,808,876 - +0.6
1,808,876 - -0.8
1,808,876 - +0.7
1,808,964 + PGA1_c17330 0.11 +1.3
1,808,969 + PGA1_c17330 0.12 +0.3
1,808,969 + PGA1_c17330 0.12 -0.0
1,808,992 + PGA1_c17330 0.13 -0.5
1,808,992 + PGA1_c17330 0.13 +0.5
1,808,992 + PGA1_c17330 0.13 +0.7
1,809,010 - PGA1_c17330 0.14 +1.2
1,809,059 + PGA1_c17330 0.17 +0.5
1,809,073 + PGA1_c17330 0.18 -0.8
1,809,075 - PGA1_c17330 0.18 +0.5
1,809,081 - PGA1_c17330 0.18 +1.1
1,809,109 - PGA1_c17330 0.20 +0.1
1,809,116 + PGA1_c17330 0.20 -0.8
1,809,173 + PGA1_c17330 0.23 -0.8
1,809,187 - PGA1_c17330 0.24 +0.8
1,809,203 + PGA1_c17330 0.25 -0.5
1,809,205 + PGA1_c17330 0.25 +0.6
1,809,220 + PGA1_c17330 0.26 +2.5
1,809,228 - PGA1_c17330 0.27 +0.2
1,809,228 - PGA1_c17330 0.27 +2.1
1,809,264 + PGA1_c17330 0.29 +0.3
1,809,272 - PGA1_c17330 0.29 -2.2
1,809,294 + PGA1_c17330 0.30 +0.1
1,809,307 - PGA1_c17330 0.31 -0.5
1,809,344 - PGA1_c17330 0.33 -1.0
1,809,357 + PGA1_c17330 0.34 +0.7
1,809,365 - PGA1_c17330 0.34 +2.9
1,809,385 + PGA1_c17330 0.35 -1.9
1,809,393 - PGA1_c17330 0.36 -0.2
1,809,421 + PGA1_c17330 0.37 -0.0
1,809,442 + PGA1_c17330 0.39 +0.3
1,809,442 + PGA1_c17330 0.39 -2.3
1,809,442 + PGA1_c17330 0.39 +1.3
1,809,450 - PGA1_c17330 0.39 +0.5
1,809,450 - PGA1_c17330 0.39 +1.3
1,809,450 - PGA1_c17330 0.39 -0.7
1,809,450 - PGA1_c17330 0.39 +0.5
1,809,450 - PGA1_c17330 0.39 -0.4
1,809,496 + PGA1_c17330 0.42 +0.2
1,809,496 + PGA1_c17330 0.42 +0.4
1,809,496 + PGA1_c17330 0.42 -0.8

Or see this region's nucleotide sequence