Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17160 and PGA1_c17170 are separated by 6 nucleotides PGA1_c17170 and PGA1_c17180 are separated by 101 nucleotides PGA1_c17180 and PGA1_c17190 are separated by 114 nucleotides PGA1_c17190 and PGA1_c17200 are separated by 133 nucleotides PGA1_c17200 and PGA1_c17210 are separated by 76 nucleotides
PGA1_c17160: PGA1_c17160 - Stress-induced morphogen (activity unknown), at 1,792,777 to 1,793,013
_c17160
PGA1_c17170: PGA1_c17170 - hypothetical protein, at 1,793,020 to 1,793,250
_c17170
PGA1_c17180: PGA1_c17180 - putative glutaredoxin, at 1,793,352 to 1,793,714
_c17180
PGA1_c17190: PGA1_c17190 - Predicted membrane protein, at 1,793,829 to 1,794,509
_c17190
PGA1_c17200: PGA1_c17200 - transcriptional regulator, TetR family, at 1,794,643 to 1,795,119
_c17200
PGA1_c17210: PGA1_c17210 - cell division protein ZapA-like protein, at 1,795,196 to 1,795,594
_c17210
Position (kb)
1793
1794
1795 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1792.858 kb on - strand, within PGA1_c17160 at 1792.982 kb on + strand, within PGA1_c17160 at 1792.982 kb on + strand, within PGA1_c17160 at 1792.990 kb on - strand at 1793.028 kb on + strand at 1793.046 kb on - strand, within PGA1_c17170 at 1793.056 kb on + strand, within PGA1_c17170 at 1793.149 kb on + strand, within PGA1_c17170 at 1793.169 kb on + strand, within PGA1_c17170 at 1793.186 kb on + strand, within PGA1_c17170 at 1793.194 kb on + strand, within PGA1_c17170 at 1793.741 kb on - strand at 1793.811 kb on + strand at 1793.819 kb on - strand at 1793.819 kb on - strand at 1793.866 kb on + strand at 1793.866 kb on + strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.874 kb on - strand at 1793.921 kb on + strand, within PGA1_c17190 at 1793.966 kb on + strand, within PGA1_c17190 at 1794.008 kb on + strand, within PGA1_c17190 at 1794.064 kb on + strand, within PGA1_c17190 at 1794.116 kb on + strand, within PGA1_c17190 at 1794.116 kb on + strand, within PGA1_c17190 at 1794.119 kb on - strand, within PGA1_c17190 at 1794.124 kb on - strand, within PGA1_c17190 at 1794.124 kb on - strand, within PGA1_c17190 at 1794.134 kb on + strand, within PGA1_c17190 at 1794.134 kb on + strand, within PGA1_c17190 at 1794.142 kb on - strand, within PGA1_c17190 at 1794.142 kb on - strand, within PGA1_c17190 at 1794.144 kb on + strand, within PGA1_c17190 at 1794.165 kb on + strand, within PGA1_c17190 at 1794.167 kb on + strand, within PGA1_c17190 at 1794.170 kb on - strand, within PGA1_c17190 at 1794.186 kb on - strand, within PGA1_c17190 at 1794.264 kb on + strand, within PGA1_c17190 at 1794.279 kb on - strand, within PGA1_c17190 at 1794.281 kb on + strand, within PGA1_c17190 at 1794.286 kb on + strand, within PGA1_c17190 at 1794.289 kb on - strand, within PGA1_c17190 at 1794.292 kb on + strand, within PGA1_c17190 at 1794.292 kb on + strand, within PGA1_c17190 at 1794.294 kb on - strand, within PGA1_c17190 at 1794.373 kb on + strand, within PGA1_c17190 at 1794.377 kb on - strand, within PGA1_c17190 at 1794.424 kb on + strand, within PGA1_c17190 at 1794.438 kb on - strand, within PGA1_c17190 at 1794.455 kb on - strand at 1794.470 kb on + strand at 1794.470 kb on + strand at 1794.604 kb on - strand at 1794.608 kb on - strand at 1794.668 kb on + strand at 1794.754 kb on + strand, within PGA1_c17200 at 1794.762 kb on - strand, within PGA1_c17200 at 1794.762 kb on - strand, within PGA1_c17200 at 1794.765 kb on + strand, within PGA1_c17200 at 1794.839 kb on - strand, within PGA1_c17200 at 1794.978 kb on - strand, within PGA1_c17200 at 1795.152 kb on - strand at 1795.152 kb on - strand at 1795.476 kb on + strand, within PGA1_c17210
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 1,792,858 - PGA1_c17160 0.34 -0.4 1,792,982 + PGA1_c17160 0.86 -1.1 1,792,982 + PGA1_c17160 0.86 +1.5 1,792,990 - -1.9 1,793,028 + +0.1 1,793,046 - PGA1_c17170 0.11 -2.4 1,793,056 + PGA1_c17170 0.16 -0.2 1,793,149 + PGA1_c17170 0.56 +0.5 1,793,169 + PGA1_c17170 0.65 -0.5 1,793,186 + PGA1_c17170 0.72 +1.1 1,793,194 + PGA1_c17170 0.75 -0.1 1,793,741 - +1.0 1,793,811 + +1.3 1,793,819 - -0.0 1,793,819 - +0.4 1,793,866 + +0.0 1,793,866 + +1.1 1,793,874 - +0.0 1,793,874 - +0.1 1,793,874 - -0.1 1,793,874 - -1.8 1,793,874 - -1.7 1,793,874 - +0.9 1,793,874 - +0.9 1,793,874 - -0.2 1,793,921 + PGA1_c17190 0.14 +0.5 1,793,966 + PGA1_c17190 0.20 +0.2 1,794,008 + PGA1_c17190 0.26 +1.5 1,794,064 + PGA1_c17190 0.35 +0.5 1,794,116 + PGA1_c17190 0.42 -0.5 1,794,116 + PGA1_c17190 0.42 +1.0 1,794,119 - PGA1_c17190 0.43 +0.5 1,794,124 - PGA1_c17190 0.43 +1.0 1,794,124 - PGA1_c17190 0.43 -0.8 1,794,134 + PGA1_c17190 0.45 +0.7 1,794,134 + PGA1_c17190 0.45 -1.7 1,794,142 - PGA1_c17190 0.46 +1.3 1,794,142 - PGA1_c17190 0.46 +0.3 1,794,144 + PGA1_c17190 0.46 -0.7 1,794,165 + PGA1_c17190 0.49 +0.5 1,794,167 + PGA1_c17190 0.50 +1.0 1,794,170 - PGA1_c17190 0.50 -0.1 1,794,186 - PGA1_c17190 0.52 -1.4 1,794,264 + PGA1_c17190 0.64 +0.1 1,794,279 - PGA1_c17190 0.66 +0.1 1,794,281 + PGA1_c17190 0.66 +0.5 1,794,286 + PGA1_c17190 0.67 +1.2 1,794,289 - PGA1_c17190 0.68 +0.5 1,794,292 + PGA1_c17190 0.68 +1.5 1,794,292 + PGA1_c17190 0.68 -2.0 1,794,294 - PGA1_c17190 0.68 +1.1 1,794,373 + PGA1_c17190 0.80 -1.2 1,794,377 - PGA1_c17190 0.80 -2.5 1,794,424 + PGA1_c17190 0.87 +1.8 1,794,438 - PGA1_c17190 0.89 +0.5 1,794,455 - -0.1 1,794,470 + -1.5 1,794,470 + -0.2 1,794,604 - +0.7 1,794,608 - +1.3 1,794,668 + +1.5 1,794,754 + PGA1_c17200 0.23 -0.2 1,794,762 - PGA1_c17200 0.25 +0.1 1,794,762 - PGA1_c17200 0.25 -0.8 1,794,765 + PGA1_c17200 0.26 -1.0 1,794,839 - PGA1_c17200 0.41 -1.6 1,794,978 - PGA1_c17200 0.70 -0.5 1,795,152 - -1.5 1,795,152 - -0.2 1,795,476 + PGA1_c17210 0.70 -0.1
Or see this region's nucleotide sequence