Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1617 and HP15_1619 overlap by 28 nucleotides HP15_1619 and HP15_1620 are separated by 81 nucleotides HP15_1620 and HP15_1621 are separated by 15 nucleotides
HP15_1617: HP15_1617 - hypothetical protein, at 1,715,590 to 1,715,721
_1617
HP15_1619: HP15_1619 - GntR domain protein, at 1,715,694 to 1,716,371
_1619
HP15_1620: HP15_1620 - flavin-containing monooxygenase FMO, at 1,716,453 to 1,718,018
_1620
HP15_1621: HP15_1621 - transcriptional regulator, LysR family protein, at 1,718,034 to 1,718,945
_1621
Position (kb)
1716
1717
1718
1719 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1715.518 kb on + strand at 1715.535 kb on + strand at 1715.600 kb on - strand at 1715.663 kb on + strand, within HP15_1617 at 1715.671 kb on - strand, within HP15_1617 at 1715.700 kb on - strand at 1715.927 kb on + strand, within HP15_1619 at 1715.969 kb on + strand, within HP15_1619 at 1716.133 kb on - strand, within HP15_1619 at 1716.246 kb on - strand, within HP15_1619 at 1716.291 kb on + strand, within HP15_1619 at 1716.488 kb on + strand at 1716.504 kb on - strand at 1716.553 kb on + strand at 1716.561 kb on - strand at 1716.597 kb on + strand at 1716.605 kb on - strand at 1716.621 kb on + strand, within HP15_1620 at 1716.716 kb on - strand, within HP15_1620 at 1716.772 kb on - strand, within HP15_1620 at 1716.772 kb on - strand, within HP15_1620 at 1716.777 kb on - strand, within HP15_1620 at 1716.858 kb on - strand, within HP15_1620 at 1716.991 kb on - strand, within HP15_1620 at 1717.305 kb on + strand, within HP15_1620 at 1717.305 kb on + strand, within HP15_1620 at 1717.311 kb on + strand, within HP15_1620 at 1717.414 kb on - strand, within HP15_1620 at 1717.486 kb on + strand, within HP15_1620 at 1717.494 kb on - strand, within HP15_1620 at 1717.494 kb on - strand, within HP15_1620 at 1717.528 kb on - strand, within HP15_1620 at 1717.678 kb on - strand, within HP15_1620 at 1717.780 kb on + strand, within HP15_1620 at 1717.878 kb on - strand at 1717.936 kb on - strand at 1718.137 kb on + strand, within HP15_1621 at 1718.145 kb on - strand, within HP15_1621 at 1718.145 kb on - strand, within HP15_1621 at 1718.155 kb on - strand, within HP15_1621 at 1718.177 kb on + strand, within HP15_1621 at 1718.316 kb on - strand, within HP15_1621 at 1718.419 kb on - strand, within HP15_1621 at 1718.511 kb on + strand, within HP15_1621 at 1718.511 kb on + strand, within HP15_1621 at 1718.530 kb on + strand, within HP15_1621 at 1718.579 kb on + strand, within HP15_1621 at 1718.663 kb on - strand, within HP15_1621 at 1718.779 kb on - strand, within HP15_1621
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,715,518 + -3.1 1,715,535 + -4.7 1,715,600 - -2.7 1,715,663 + HP15_1617 0.55 -1.5 1,715,671 - HP15_1617 0.61 -4.3 1,715,700 - -1.2 1,715,927 + HP15_1619 0.34 -5.0 1,715,969 + HP15_1619 0.41 -3.7 1,716,133 - HP15_1619 0.65 -3.7 1,716,246 - HP15_1619 0.81 -2.2 1,716,291 + HP15_1619 0.88 -3.7 1,716,488 + +0.2 1,716,504 - -0.0 1,716,553 + -0.8 1,716,561 - +0.4 1,716,597 + -0.2 1,716,605 - +0.0 1,716,621 + HP15_1620 0.11 -0.2 1,716,716 - HP15_1620 0.17 +0.8 1,716,772 - HP15_1620 0.20 +1.0 1,716,772 - HP15_1620 0.20 -0.8 1,716,777 - HP15_1620 0.21 -1.8 1,716,858 - HP15_1620 0.26 +0.3 1,716,991 - HP15_1620 0.34 +0.4 1,717,305 + HP15_1620 0.54 +1.2 1,717,305 + HP15_1620 0.54 +0.8 1,717,311 + HP15_1620 0.55 +2.1 1,717,414 - HP15_1620 0.61 -0.0 1,717,486 + HP15_1620 0.66 -0.2 1,717,494 - HP15_1620 0.66 -2.2 1,717,494 - HP15_1620 0.66 +1.4 1,717,528 - HP15_1620 0.69 +2.1 1,717,678 - HP15_1620 0.78 +0.2 1,717,780 + HP15_1620 0.85 -1.0 1,717,878 - +0.1 1,717,936 - -0.6 1,718,137 + HP15_1621 0.11 -0.3 1,718,145 - HP15_1621 0.12 -0.1 1,718,145 - HP15_1621 0.12 +0.8 1,718,155 - HP15_1621 0.13 +0.8 1,718,177 + HP15_1621 0.16 +1.1 1,718,316 - HP15_1621 0.31 -2.2 1,718,419 - HP15_1621 0.42 +0.4 1,718,511 + HP15_1621 0.52 -0.3 1,718,511 + HP15_1621 0.52 +0.5 1,718,530 + HP15_1621 0.54 -0.5 1,718,579 + HP15_1621 0.60 -0.3 1,718,663 - HP15_1621 0.69 -0.8 1,718,779 - HP15_1621 0.82 -0.5
Or see this region's nucleotide sequence