Strain Fitness in Marinobacter adhaerens HP15 around HP15_1568

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1566 and HP15_1567 are separated by 99 nucleotidesHP15_1567 and HP15_1568 overlap by 17 nucleotidesHP15_1568 and HP15_1569 are separated by 7 nucleotides HP15_1566: HP15_1566 - conserved hypothetical protein, at 1,646,626 to 1,646,877 _1566 HP15_1567: HP15_1567 - two component transcriptional regulator, LuxR family, at 1,646,977 to 1,647,639 _1567 HP15_1568: HP15_1568 - excinuclease ABC subunit C, at 1,647,623 to 1,649,485 _1568 HP15_1569: HP15_1569 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, at 1,649,493 to 1,650,071 _1569 Position (kb) 1647 1648 1649 1650Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1646.738 kb on + strand, within HP15_1566at 1646.741 kb on - strand, within HP15_1566at 1646.757 kb on + strand, within HP15_1566at 1646.772 kb on + strand, within HP15_1566at 1646.780 kb on - strand, within HP15_1566at 1646.780 kb on - strand, within HP15_1566at 1646.795 kb on - strand, within HP15_1566at 1646.800 kb on - strand, within HP15_1566at 1646.877 kb on + strandat 1646.895 kb on + strandat 1646.982 kb on - strandat 1647.010 kb on - strandat 1647.498 kb on - strand, within HP15_1567at 1647.498 kb on - strand, within HP15_1567at 1647.509 kb on + strand, within HP15_1567at 1647.952 kb on + strand, within HP15_1568at 1647.995 kb on + strand, within HP15_1568at 1648.168 kb on + strand, within HP15_1568at 1648.540 kb on + strand, within HP15_1568at 1648.600 kb on + strand, within HP15_1568at 1648.637 kb on + strand, within HP15_1568at 1649.152 kb on - strand, within HP15_1568at 1649.395 kb on + strandat 1650.070 kb on + strandat 1650.073 kb on - strandat 1650.120 kb on - strandat 1650.140 kb on + strandat 1650.192 kb on + strandat 1650.199 kb on - strandat 1650.286 kb on + strandat 1650.359 kb on + strandat 1650.373 kb on + strandat 1650.397 kb on - strandat 1650.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,646,738 + HP15_1566 0.44 -2.8
1,646,741 - HP15_1566 0.46 -2.2
1,646,757 + HP15_1566 0.52 -1.6
1,646,772 + HP15_1566 0.58 -2.6
1,646,780 - HP15_1566 0.61 -1.8
1,646,780 - HP15_1566 0.61 -2.5
1,646,795 - HP15_1566 0.67 -1.5
1,646,800 - HP15_1566 0.69 -2.9
1,646,877 + -0.5
1,646,895 + -0.1
1,646,982 - -3.5
1,647,010 - -3.4
1,647,498 - HP15_1567 0.79 -4.0
1,647,498 - HP15_1567 0.79 -1.2
1,647,509 + HP15_1567 0.80 -0.2
1,647,952 + HP15_1568 0.18 -3.2
1,647,995 + HP15_1568 0.20 -5.0
1,648,168 + HP15_1568 0.29 -3.5
1,648,540 + HP15_1568 0.49 -4.2
1,648,600 + HP15_1568 0.52 -1.8
1,648,637 + HP15_1568 0.54 -4.0
1,649,152 - HP15_1568 0.82 -3.2
1,649,395 + -2.5
1,650,070 + -0.1
1,650,073 - -0.1
1,650,120 - +0.5
1,650,140 + -0.0
1,650,192 + +1.4
1,650,199 - -0.2
1,650,286 + +0.8
1,650,359 + -0.1
1,650,373 + +0.8
1,650,397 - -0.5
1,650,422 + -0.0

Or see this region's nucleotide sequence